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Jupyter's R-kernel standard error output has line breaks after every character #3172

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jolespin opened this issue Jul 27, 2016 · 8 comments
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@jolespin
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Sometimes an error window pops up but most of the time it just pops up in the stdout as each character separated by linebreaks
screen shot 2016-07-27 at 9 32 12 am

Here's my conda info

Current conda install:

             platform : osx-64
        conda version : 4.1.11
    conda-env version : 2.5.2
  conda-build version : 0+unknown
       python version : 3.5.2.final.0
     requests version : 2.9.1
     root environment : /Users/jespinoz/anaconda  (writable)
  default environment : /Users/jespinoz/anaconda
     envs directories : /Users/jespinoz/anaconda/envs
        package cache : /Users/jespinoz/anaconda/pkgs
         channel URLs : https://conda.anaconda.org/bioconda/osx-64/
                        https://conda.anaconda.org/bioconda/noarch/
                        https://conda.anaconda.org/r/osx-64/
                        https://conda.anaconda.org/r/noarch/
                        https://repo.continuum.io/pkgs/free/osx-64/
                        https://repo.continuum.io/pkgs/free/noarch/
                        https://repo.continuum.io/pkgs/pro/osx-64/
                        https://repo.continuum.io/pkgs/pro/noarch/
          config file : /Users/jespinoz/.condarc
         offline mode : False
    is foreign system : False

Here's my R info:

$ which R
/Users/jespinoz/anaconda/bin/R

w/ that R ^^^

> version
               _                           
platform       x86_64-apple-darwin11.0.0   
arch           x86_64                      
os             darwin11.0.0                
system         x86_64, darwin11.0.0        
status                                     
major          3                           
minor          3.1                         
year           2016                        
month          06                          
day            21                          
svn rev        70800                       
language       R                           
version.string R version 3.3.1 (2016-06-21)
nickname       Bug in Your Hair            
> 
@HugoTian
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could you please give me the code in your notebook that leads to this error ?

I will try to reproduce it and forward to notebook group to fix it.

Thanks

@jolespin
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Yea, try just a simple error like: print "a"

screen shot 2016-07-27 at 3 34 23 pm

@mingwandroid
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@csoja can you assign this to the best person to look into it? If it's something I've done wrong then I'd be glad to be advised where to begin investigating.

@csoja
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csoja commented Aug 25, 2016

@mingwandroid I'm not sure who is the best person. Are you able to reproduce the error?

@mingwandroid
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Yeah, I've seen it, it's annoying rather than very serious which is why I've not spent time investigating it.

@jolespin
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Unfortunately, I'm not going to be able to help w/ the troubleshooting b/c my R Kernel is broken in Jupyter :( #3316 (comment) . Luckily, I've found a way to use my version of R installed through conda to work on RStudio (details in my answer here http://stackoverflow.com/questions/38534383/how-to-set-up-conda-installed-r-for-use-with-rstudio)

@mingwandroid
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This is fixed now. I'm not entirely sure who or what fixed it though.

@github-actions
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github-actions bot commented Nov 6, 2021

Hi there, thank you for your contribution to Conda!

This issue has been automatically locked since it has not had recent activity after it was closed.

Please open a new issue if needed.

@github-actions github-actions bot added the locked [bot] locked due to inactivity label Nov 6, 2021
@github-actions github-actions bot locked as resolved and limited conversation to collaborators Nov 6, 2021
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