api_doc.rst

Packages and modules

cmp package

.. automodule:: cmp
   :members:
   :undoc-members:
   :show-inheritance:

Submodules

.. toctree::
   :maxdepth: 3

   api/generated/cmp.parser
   api/generated/cmp.project

Pipelines and stages modules

.. toctree::
   :maxdepth: 5

   api/generated/cmp.pipelines.common

.. toctree::
   :maxdepth: 5

   api/generated/cmp.pipelines.anatomical

.. toctree::
   :maxdepth: 5

   api/generated/cmp.pipelines.diffusion

.. toctree::
   :maxdepth: 5

   api/generated/cmp.pipelines.functional

.. toctree::
   :maxdepth: 5

   api/generated/cmp.stages

GUI modules

.. toctree::
   :maxdepth: 5

   api/generated/cmp.bidsappmanager.core
   api/generated/cmp.bidsappmanager.gui
   api/generated/cmp.bidsappmanager.project

.. toctree::
   :maxdepth: 5

   api/generated/cmp.bidsappmanager.pipelines.common

.. toctree::
   :maxdepth: 5

   api/generated/cmp.bidsappmanager.pipelines.anatomical

.. toctree::
   :maxdepth: 5

   api/generated/cmp.bidsappmanager.pipelines.diffusion

.. toctree::
   :maxdepth: 5

   api/generated/cmp.bidsappmanager.pipelines.functional

.. toctree::
   :maxdepth: 5

   api/generated/cmp.bidsappmanager.stages

cmtklib package

.. automodule:: cmtklib
   :members:
   :undoc-members:
   :show-inheritance:

Subpackages

.. toctree::
   :maxdepth: 5

   api/generated/cmtklib.bids
   api/generated/cmtklib.interfaces

Submodules

.. toctree::
   :maxdepth: 4

   api/generated/cmtklib.carbonfootprint
   api/generated/cmtklib.config
   api/generated/cmtklib.connectome
   api/generated/cmtklib.data.parcellation.util
   api/generated/cmtklib.data.parcellation.viz
   api/generated/cmtklib.eeg
   api/generated/cmtklib.diffusion
   api/generated/cmtklib.functionalMRI
   api/generated/cmtklib.parcellation
   api/generated/cmtklib.util