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Relevant is a generous way of putting it.

NLP/computational linguistics

e.g. https://www.cs.rochester.edu/~tetreaul/conferences.html

name when/where cfp deadline
ACL (Meeting of Association for Computational Linguistics)
http://acl2016.org/
7-12 Aug 2016
Berlin
short: 29 Feb
long: 18 Mar
WS papers: 8 May
Repl4NLP (Workshop on Representation Learning for NLP)
https://sites.google.com/site/repl4nlp2016/
11 Aug 2016
Berlin (colocated with ACL)
papers: 8 May
RepEval (Workshop on Evaluating Vector Space Representations for NLP)
https://sites.google.com/site/repevalacl16/
12 Aug 2016
Berlin (colocated with ACL)
papers: 8 May
CoNLL (Conference on Computational Natural Language Learning)
http://www.conll.org/
11-12 Aug 2016
Berlin, Germany
(colocated with ACL)
papers: 6 May
COLING (International Conference on Computational Linguistics)
http://coling2016.anlp.jp/
11-16 Dec 2016
Osaka, Japan
papers: 15 July
NAACL-HLT (North American Chapter of the Association for Computational Linguistics: Human Language Technologies)
http://naacl.org/naacl-hlt-2016/
12-17 June 2016,
San Diego, USA
papers: 6 Jan
WS papers: 25 Feb
EMNLP (SIGDAT conference on Empirical Methods for Natural Language Processing)
http://naacl.org/naacl-hlt-2016/cfp.html/...ish
2-6 Nov 2016
Austin, Texas
papers:???
WS papers: Aug
Interspeech
http://www.interspeech2.org/
8-12 Sep 2016
SF, USA
papers: 23 Mar
CICLing (Conference on Intelligent Text Processing and Computational Linguistics)
http://www.cicling.org/2016/
3-9 Apr 2016
Turkey
???
EACL (European Association of Computational Linguistics) ??? ???
LREC (Language Resources and Evaluation Conference)
http://lrec2016.lrec-conf.org/en/
23-28 May 2016
Portorož, Slovenia
25 Oct 2015
ICON (International Conference on Natural Language Processing)
http://ltrc.iiit.ac.in/icon2015/index.php
11-13 Dec 2015
Trivandrum, India
papers: 30 Aug
GSCL (International Conference of the German Society for Computational Linguistics)
http://gscl2015.inf.uni-due.de/
30 Sep - 2 Oct 2015
Duisburg-Essen, Germany
papers: 15 May
IWCS (International Workshop on Computational Semantics)
https://iwcs2015.github.io/
14-17 Apr 2015
London, UK
papers: 19 Dec
LDL (Workshop on Linked Data in Linguistics)
http://ldl2015.linguistic-lod.org/
31 July 2015
Beijing, China
(colocated with ACL-IJCNLP 2015)
papers: 14 May

Health informatics, medicine etc.

name when/where cfp deadline
MUCMD: Machine Learning in Healthcare
http://mucmd.org/
19-20 Aug 2016
Los Angeles, USA
papers: 15 May
EMNLP WS: International Workshop on Health Text Mining and Information Analysis
https://louhi2015.limsi.fr/
17 Sep 2015
Lisbon, Portugal
WS papers: 5 July
MedInfo (World Congress on Medical and Health Informatics)
http://www.imia-medinfo.org/new2/node/9
http://medinfo2015.com/
triennial… next in 2017
Beijing China
???
MIE (Medical Informatics Europe)
http://hec2016.eu/
28 Aug - 2 Sep 2016
Munich, Germany
pres/posters: 21 Feb
eHealth
http://ehealth-conf.org/
21-23 July 2015
Gran Canaria, Spain
papers: 1 Jun
GHC (Global Healthcare Conference)
http://www.globalhc-conf.org/index.html
18-19 July 2016
Singapore
papers: 18 Mar
HEALTHINF (International Conference on Health Informatics)
http://www.healthinf.biostec.org/
21-23 Feb 2016
Rome, Italy
papers: 24 Sep
BigData4Healthcare 2016 (1st International Workshop on Big Data Analytics for Healthcare and Well-being)
http://sigai.or.kr/workshop/bigcomp/2016/big-data-for-healthcare/
January 18, 2016
Hong Kong, China
papers: 29 Nov
AIMA (International Workshop on Artificial Intelligence in Medical Applications)
https://fedcsis.org/aima
11-14 Sep 2016
Gdansk, Poland
papers: 18 Apr
Health2.0 Annual Fall
link
25-28 Sep
Santa Clara, USA
??? unsure if research-oriented
Health 2.0 Europe
link
10-12 May
Barcelona
??? see above
Workshop on Data Mining for Healthcare
http://www.dmmh.org/
2 May 2015
Vancouver, Canada
(colocated with SIAM Data Mining)
papers: 2 Feb
KES-InMed-16 (Innovation in Medicine and Healthcare)
http://inmed-16.kesinternational.org/
15-17 June 2016
Tenerife
papers: Jan 18
CBMS (International Symposium on Computer-Based Medical System)
http://www.cbms2016.org/
20 June, 21-23 June
Dublin, Belfast, Ireland
abstracts: 8 Jan
papers: 18 Jan
IEE-ICHI (International Conference on Healthcare Informatics)
http://ieee-ichi.org/
"early" Oct 2016
Chicago, USA
papers: May
AIM@EPIA (Portuguese Conference on AI): Artificial Intelligence in Medicine Track
http://epia2015.dei.uc.pt/artificial-intelligence-in-medicine/
8-11 Sep
2015
papers: 9 March
eTELEMED (International Conference on eHealth, Telemedicine, and Social Medicine)
http://www.iaria.org/conferences2016/eTELEMED16.html
24-28 Apr
Venice, Italy
papers: 8 Dec
ICSH (International Conference for Smart Health)
http://www.icsh2015.org/
17-18 Nov 2015
Phoenix, USA
papers: 6 Sep
BHI (International Conference on Biomedical and Health Informatics)
http://bhi.embs.org/2016/authors/call-for-papers/
24-27 Feb 2016
Las Vegas, USA
papers: 7 Dec
HIBIT (Health Informatics and Bioinformatics)
http://hibit2015.mu.edu.tr/
16-17 Oct 2015
Muğla, Turkey
????

Biology/medicine (more straight-up)

name when/where cfp deadline
AACR (American Association for Cancer Research Annual Meeting)
link
16-20 Apr 2016
New Orleans, USA
abstracts: 1 Dec

ML: main

kinda arbitrary

name when/where cfp deadline
NIPS (Neural Information Processing Systems)
https://nips.cc/
7-12 Dec 2015
Montreal, Canada
papers: 5 Jun
ICML (International Conference on Machine Learning)
http://icml.cc/2016/
19-24 June 2016
NYC, USA
papers: 5 Feb
KDD (Knowledge Discovery and Data Mining)
http://www.kdd.org/kdd2016/
13-17 Aug 2016
San Francisco, USA
papers: 12 Feb
AAAI (Association for the Advancement of Artificial Intelligence)
https://www.aaai.org/Conferences/AAAI/aaai16.php
12-17 Feb 2016
Phoenix, USA
abstract: 10 Sep
paper: 15 Sep
ICLR (International Conference on Learning Representations)
http://www.iclr.cc/doku.php
2-4 May 2016
Puerto Rico
abstract: 12 Nov
papers: 19 Nov
AISTATS (International Conference on Artificial Intelligence and Statistics)
http://www.aistats.org/
9-11 May 2016
Cadiz, Spain
papers: 9 Oct
UAI (Conference on Uncertainty in Artificial Intelligence)
http://auai.org/uai2015/
12-16 July 2015
Amsterdam, Netherlands
papers: 3 March

ML: less main

may require further categorisation

name when/where cfp deadline
IJCCI (International Joint Conference on Computational Intelligence)
http://www.ijcci.org/
9-11 Nov 2016
Portugal
papers: 12 May
IC3K (International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management)
http://www.ic3k.org/
9-11 Nov 2016
Portugal
papers: 12 May
ACML (Asian Conference on Machine Learning)
http://acml-conf.org/2015/acml.php
20-22 Nov 2015
Hong Kong
papers: 11 May
ICPR (International Conference on Pattern Recognition)
http://www.icpr2016.org/site/
4-8 Dec 2016
Cancún Mexico
papers: 4 Apr
ISNN (International Symposium on Neural Networks)
http://isnn.mae.cuhk.edu.hk/
15-18 Oct 2015
Jeju, Korea
papers: 31 May
ICANN (International Conference on Artificial Neural Networks)
http://icann2016.org/
6-9 Sep 2016
Barcelona
papers: 1 Mar
WCCI (World Conference on Computational Intelligence)
http://www.wcci2016.org/
... International Joint Conference on Neural Networks
25-29 July 2016
Vancouver, Canada
papers: 15 Jan
ICIC (International Conference on Intelligent Computing)
http://www.ic-ic.org/2016/index.htm
2-5 Aug 2016
Lanzhou, China
papers: 1 Mar
IJCAI (International Joint Conference on Artificial Intelligence)
http://ijcai-16.org/
9-15 July 2016
NYC, USA
abstract: 27 Jan
paper: 2 Feb
ECAI (European Conference on Artificial Intelligence)
http://www.ecai2016.org/
29 Aug - 2 Sep 2016
The Hague, Holland
paper: 15 June
ECML-PKDD (European Conference on Machine Learning and Principles and Practice of Knowledge Discovery)
http://www.ecmlpkdd2016.org/
19-23 Sep 2016
Italy
abstracts: 1 Apr
papers: 4 Apr

ML: theory

name when/where cfp deadline
COLT Conference on Learning Theory)
http://www.learningtheory.org/colt2016/
23-26 June 2016
NYC, USA
papers: 12 Feb

Misc data science/IR

name when/where cfp deadline
IEEE/ACM International Symposium on Big Data Computing
http://datasys.cs.iit.edu/events/BDC2015/
10 Dec 2015
Cyprus
abstracts: 10 July
papers: 7 Aug
SIAM International Conference on Data Mining
http://www.siam.org/meetings/sdm16/
5-7 May 2016
Miami, USA
abstracts: 9 Oct
papers: 16 Oct
The International Symposium on Designing, Validating, and Using Datasets
http://www.iaria.org/conferences2016/DATASETS.html
22-26 May 2016
Valencia, Spain
papers: 5 Jan
SIGIR (Conference on Research and Development in Information Retrieval)
http://sigir.org/sigir2016/
17-21 July 2016
Pisa, Italy
abstract: 14 Jan
papers: 21 Jan
ICDM (Industrial Conference on Data Mining)
http://www.data-mining-forum.de/
13-17 July 2016
NYC, USA
papers: 15 Jan

Security

Health-focused

name when/where cfp deadline
HealthTech
https://www.usenix.org/conference/healthtech15
10 Aug 2015
Washington DC, USA
(colocated with USENIX Security)
posters: 24 June

Open Science

name when/where cfp deadline
ECSA (European Citizen Science Association)
http://www.ecsa2016.eu/
19-21 May 2016
Berlin, Germany
abstracts: Jan 2016