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utils.py
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utils.py
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from __future__ import division
"""
FEAT Utils Class
==========================================
read_facet: read in iMotions-FACET formatted files
read_affdex: read in iMotions-affdex formatted files
read_affectiva: read in affectiva-api formatted files
read_openface: read in openface formatted files
"""
__all__ = [
"get_resource_path",
"read_facet",
"read_affdex",
"read_affectiva",
"read_openface",
"softmax",
"registration",
"neutral",
"load_h5",
]
__author__ = ["Jin Hyun Cheong, Tiankang Xie"]
import os, math, pywt, pickle, h5py
from sklearn.cross_decomposition import PLSRegression
# setattr(PLSRegression, "_x_mean", None)
# setattr(PLSRegression, "_y_mean", None)
# setattr(PLSRegression, "_x_std", None)
from sklearn import __version__
import numpy as np, pandas as pd
from scipy import signal
from scipy.integrate import simps
import feat
import cv2
import math
from PIL import Image
import torch
""" DEFINE IMPORTANT VARIABLES """
# FEAT columns
FEAT_EMOTION_MAPPER = {
0: "anger",
1: "disgust",
2: "fear",
3: "happiness",
4: "sadness",
5: "surprise",
6: "neutral",
}
FEAT_EMOTION_COLUMNS = [
"anger",
"disgust",
"fear",
"happiness",
"sadness",
"surprise",
"neutral",
]
FEAT_FACEBOX_COLUMNS = [
"FaceRectX",
"FaceRectY",
"FaceRectWidth",
"FaceRectHeight",
"FaceScore",
]
# FEAT_FACEBOX_COLUMNS = ['FaceRectX1','FaceRectY1','FaceRectX2','FaceRectY2']
FEAT_TIME_COLUMNS = ["frame"]
# FACET columns
FACET_EMOTION_COLUMNS = [
"Joy",
"Anger",
"Surprise",
"Fear",
"Contempt",
"Disgust",
"Sadness",
"Confusion",
"Frustration",
"Neutral",
"Positive",
"Negative",
]
FACET_FACEBOX_COLUMNS = ["FaceRectX", "FaceRectY", "FaceRectWidth", "FaceRectHeight"]
FACET_TIME_COLUMNS = ["Timestamp", "MediaTime", "FrameNo", "FrameTime"]
FACET_FACEPOSE_COLUMNS = ["Pitch", "Roll", "Yaw"]
FACET_DESIGN_COLUMNS = ["StimulusName", "SlideType", "EventSource", "Annotation"]
# OpenFace columns
landmark_length = 68
openface_2d_landmark_columns = [f"x_{i}" for i in range(landmark_length)] + [
f"y_{i}" for i in range(landmark_length)
]
openface_3d_landmark_columns = (
[f"X_{i}" for i in range(landmark_length)]
+ [f"Y_{i}" for i in range(landmark_length)]
+ [f"Z_{i}" for i in range(landmark_length)]
)
jaanet_AU_list = [1, 2, 4, 6, 7, 10, 12, 14, 15, 17, 23, 24]
RF_AU_list = [1,2,4,5,6,7,9,10,11,12,14,15,17,20,23,24,25,26,28,43]
jaanet_AU_presence = [f"AU" + str(i).zfill(2) for i in jaanet_AU_list]
jaanet_AU_presence.sort()
RF_AU_presence = [f"AU" + str(i).zfill(2) for i in RF_AU_list]
RF_AU_presence.sort()
openface_AU_list = [1, 2, 4, 5, 6, 7, 9, 10, 12, 14, 15, 17, 20, 23, 25, 26, 45]
openface_AU_intensity = [f"AU" + str(i).zfill(2) + "_r" for i in openface_AU_list]
openface_AU_presence = [f"AU" + str(i).zfill(2) + "_c" for i in openface_AU_list + [28]]
openface_AU_presence.sort()
openface_AU_columns = openface_AU_intensity + openface_AU_presence
openface_time_columns = ["frame", "timestamp"]
openface_gaze_columns = [
"gaze_0_x",
"gaze_0_y",
"gaze_0_z",
"gaze_1_x",
"gaze_1_y",
"gaze_1_z",
]
openface_facepose_columns = [
"pose_Tx",
"pose_Ty",
"pose_Tz",
"pose_Rx",
"pose_Ry",
"pose_Rz",
]
OPENFACE_ORIG_COLUMNS = (
openface_time_columns
+ ["confidence", "success"]
+ openface_gaze_columns
+ openface_facepose_columns
+ openface_2d_landmark_columns
+ openface_3d_landmark_columns
+ [
"p_scale",
"p_rx",
"p_ry",
"p_rz",
"p_tx",
"p_ty",
"p_0",
"p_1",
"p_2",
"p_3",
"p_4",
"p_5",
"p_6",
"p_7",
"p_8",
"p_9",
"p_10",
"p_11",
"p_12",
"p_13",
"p_14",
"p_15",
"p_16",
"p_17",
"p_18",
"p_19",
"p_20",
"p_21",
"p_22",
"p_23",
"p_24",
"p_25",
"p_26",
"p_27",
"p_28",
"p_29",
"p_30",
"p_31",
"p_32",
"p_33",
]
+ openface_AU_columns
)
def face_rect_to_coords(rectangle):
"""
Takes in a (x, y, w, h) array and transforms it into (x, y, x2, y2)
"""
return [
rectangle[0],
rectangle[1],
rectangle[0] + rectangle[2],
rectangle[1] + rectangle[3],
]
def get_resource_path():
""" Get path to feat resource directory. """
return os.path.join(feat.__path__[0], "resources") # points to the package folder.
# return ("F:/feat/feat/") # points to the package folder.
# return os.path.join(os.path.dirname(__file__), 'resources')
def load_h5(file_name="pyfeat_aus_to_landmarks.h5"):
"""Load the h5 PLS model for plotting.
Args:
file_name (str, optional): Specify model to load.. Defaults to 'blue.h5'.
Returns:
model: PLS model
"""
try:
hf = h5py.File(os.path.join(get_resource_path(), file_name), "r")
d1 = hf.get("coef")
d2 = hf.get("x_mean")
d3 = hf.get("y_mean")
d4 = hf.get("x_std")
model = PLSRegression(len(d1))
model.coef_ = np.array(d1)
if int(__version__.split(".")[1]) < 24:
model.x_mean_ = np.array(d2)
model.y_mean_ = np.array(d3)
model.x_std_ = np.array(d4)
else:
model._x_mean = np.array(d2)
model._y_mean = np.array(d3)
model._x_std = np.array(d4)
hf.close()
except Exception as e:
print("Unable to load data ", file_name, ":", e)
return model
def read_feat(fexfile):
"""This function reads files extracted using the Detector from the Feat package.
Args:
fexfile: Path to facial expression file.
Returns:
Fex of processed facial expressions
"""
d = pd.read_csv(fexfile)
au_columns = [col for col in d.columns if "AU" in col]
return feat.Fex(
d,
filename=fexfile,
au_columns=au_columns,
emotion_columns=FEAT_EMOTION_COLUMNS,
landmark_columns=openface_2d_landmark_columns,
facebox_columns=FEAT_FACEBOX_COLUMNS,
time_columns=FEAT_TIME_COLUMNS,
detector="Feat",
)
def read_facet(facetfile, features=None, raw=False, sampling_freq=None):
"""This function reads in an iMotions-FACET exported facial expression file.
Args:
facetfile: iMotions-FACET file. Files from iMotions 5, 6, and 7 have been tested and supported
features: If a list of iMotion-FACET column names are passed, those are returned. Otherwise, default columns are returned in the following format:['Timestamp','FaceRectX','FaceRectY','FaceRectWidth','FaceRectHeight', 'Joy','Anger','Surprise','Fear','Contempt', 'Disgust','Sadness','Confusion','Frustration', 'Neutral','Positive','Negative','AU1','AU2', 'AU4','AU5','AU6','AU7','AU9','AU10', 'AU12','AU14','AU15','AU17','AU18','AU20', 'AU23','AU24','AU25','AU26','AU28','AU43', 'Yaw', 'Pitch', 'Roll']. Note that these column names are different from the original files which has ' Evidence', ' Degrees' appended to each column.
raw (default=False): Set to True to return all columns without processing.
sampling_freq: sampling frequency to pass to Fex
Returns:
dataframe of processed facial expressions
"""
# Check iMotions Version
versionstr = ""
try:
with open(facetfile, "r") as f:
studyname = f.readline().replace("\t", "").replace("\n", "")
studydate = f.readline().replace("\t", "").replace("\n", "")
versionstr = f.readline().replace("\t", "").replace("\n", "")
versionnum = int(versionstr.split(" ")[-1].split(".")[0])
except:
raise TypeError(
"Cannot infer version of iMotions-FACET file. Check to make sure this is the raw iMotions-FACET file."
)
d = pd.read_csv(facetfile, skiprows=5, sep="\t")
# Check if features argument is passed and return only those features, else return all columns
if isinstance(features, list):
try:
d = d[features]
if raw:
return feat.Fex(d, filename=facetfile)
except:
raise KeyError([features, "not in facetfile"])
elif isinstance(features, type(None)):
if raw:
return feat.Fex(d, filename=facetfile)
else:
fex_columns = [
col.replace(" Evidence", "").replace(" Degrees", "")
for col in d.columns
if "Evidence" in col or "Degrees" in col
]
# Remove Intensity as this has been deprecated
cols2drop = [col for col in d.columns if "Intensity" in col]
d = d.drop(columns=cols2drop)
d.columns = [col.replace(" Evidence", "") for col in d.columns]
d.columns = [col.replace(" Degrees", "") for col in d.columns]
d.columns = [col.replace(" ", "") for col in d.columns]
# d._metadata = fex_columns
au_columns = [col for col in d.columns if "AU" in col]
return feat.Fex(
d,
filename=facetfile,
au_columns=au_columns,
emotion_columns=FACET_EMOTION_COLUMNS,
facebox_columns=FACET_FACEBOX_COLUMNS,
facepose_columns=FACET_FACEPOSE_COLUMNS,
time_columns=FACET_TIME_COLUMNS,
design_columns=FACET_DESIGN_COLUMNS,
detector="FACET",
sampling_freq=sampling_freq,
)
def read_openface(openfacefile, features=None):
"""
This function reads in an OpenFace exported facial expression file.
Args:
features: If a list of column names are passed, those are returned. Otherwise, default returns the following features:
['frame', 'timestamp', 'confidence', 'success', 'gaze_0_x',
'gaze_0_y', 'gaze_0_z', 'gaze_1_x', 'gaze_1_y', 'gaze_1_z',
'pose_Tx', 'pose_Ty', 'pose_Tz', 'pose_Rx', 'pose_Ry', 'pose_Rz',
'x_0', 'x_1', 'x_2', 'x_3', 'x_4', 'x_5', 'x_6', 'x_7', 'x_8',
'x_9', 'x_10', 'x_11', 'x_12', 'x_13', 'x_14', 'x_15', 'x_16',
'x_17', 'x_18', 'x_19', 'x_20', 'x_21', 'x_22', 'x_23', 'x_24',
'x_25', 'x_26', 'x_27', 'x_28', 'x_29', 'x_30', 'x_31', 'x_32',
'x_33', 'x_34', 'x_35', 'x_36', 'x_37', 'x_38', 'x_39', 'x_40',
'x_41', 'x_42', 'x_43', 'x_44', 'x_45', 'x_46', 'x_47', 'x_48',
'x_49', 'x_50', 'x_51', 'x_52', 'x_53', 'x_54', 'x_55', 'x_56',
'x_57', 'x_58', 'x_59', 'x_60', 'x_61', 'x_62', 'x_63', 'x_64',
'x_65', 'x_66', 'x_67', 'y_0', 'y_1', 'y_2', 'y_3', 'y_4', 'y_5',
'y_6', 'y_7', 'y_8', 'y_9', 'y_10', 'y_11', 'y_12', 'y_13', 'y_14',
'y_15', 'y_16', 'y_17', 'y_18', 'y_19', 'y_20', 'y_21', 'y_22',
'y_23', 'y_24', 'y_25', 'y_26', 'y_27', 'y_28', 'y_29', 'y_30',
'y_31', 'y_32', 'y_33', 'y_34', 'y_35', 'y_36', 'y_37', 'y_38',
'y_39', 'y_40', 'y_41', 'y_42', 'y_43', 'y_44', 'y_45', 'y_46',
'y_47', 'y_48', 'y_49', 'y_50', 'y_51', 'y_52', 'y_53', 'y_54',
'y_55', 'y_56', 'y_57', 'y_58', 'y_59', 'y_60', 'y_61', 'y_62',
'y_63', 'y_64', 'y_65', 'y_66', 'y_67', 'X_0', 'X_1', 'X_2', 'X_3',
'X_4', 'X_5', 'X_6', 'X_7', 'X_8', 'X_9', 'X_10', 'X_11', 'X_12',
'X_13', 'X_14', 'X_15', 'X_16', 'X_17', 'X_18', 'X_19', 'X_20',
'X_21', 'X_22', 'X_23', 'X_24', 'X_25', 'X_26', 'X_27', 'X_28',
'X_29', 'X_30', 'X_31', 'X_32', 'X_33', 'X_34', 'X_35', 'X_36',
'X_37', 'X_38', 'X_39', 'X_40', 'X_41', 'X_42', 'X_43', 'X_44',
'X_45', 'X_46', 'X_47', 'X_48', 'X_49', 'X_50', 'X_51', 'X_52',
'X_53', 'X_54', 'X_55', 'X_56', 'X_57', 'X_58', 'X_59', 'X_60',
'X_61', 'X_62', 'X_63', 'X_64', 'X_65', 'X_66', 'X_67', 'Y_0',
'Y_1', 'Y_2', 'Y_3', 'Y_4', 'Y_5', 'Y_6', 'Y_7', 'Y_8', 'Y_9',
'Y_10', 'Y_11', 'Y_12', 'Y_13', 'Y_14', 'Y_15', 'Y_16', 'Y_17',
'Y_18', 'Y_19', 'Y_20', 'Y_21', 'Y_22', 'Y_23', 'Y_24', 'Y_25',
'Y_26', 'Y_27', 'Y_28', 'Y_29', 'Y_30', 'Y_31', 'Y_32', 'Y_33',
'Y_34', 'Y_35', 'Y_36', 'Y_37', 'Y_38', 'Y_39', 'Y_40', 'Y_41',
'Y_42', 'Y_43', 'Y_44', 'Y_45', 'Y_46', 'Y_47', 'Y_48', 'Y_49',
'Y_50', 'Y_51', 'Y_52', 'Y_53', 'Y_54', 'Y_55', 'Y_56', 'Y_57',
'Y_58', 'Y_59', 'Y_60', 'Y_61', 'Y_62', 'Y_63', 'Y_64', 'Y_65',
'Y_66', 'Y_67', 'Z_0', 'Z_1', 'Z_2', 'Z_3', 'Z_4', 'Z_5', 'Z_6',
'Z_7', 'Z_8', 'Z_9', 'Z_10', 'Z_11', 'Z_12', 'Z_13', 'Z_14', 'Z_15',
'Z_16', 'Z_17', 'Z_18', 'Z_19', 'Z_20', 'Z_21', 'Z_22', 'Z_23',
'Z_24', 'Z_25', 'Z_26', 'Z_27', 'Z_28', 'Z_29', 'Z_30', 'Z_31',
'Z_32', 'Z_33', 'Z_34', 'Z_35', 'Z_36', 'Z_37', 'Z_38', 'Z_39',
'Z_40', 'Z_41', 'Z_42', 'Z_43', 'Z_44', 'Z_45', 'Z_46', 'Z_47',
'Z_48', 'Z_49', 'Z_50', 'Z_51', 'Z_52', 'Z_53', 'Z_54', 'Z_55',
'Z_56', 'Z_57', 'Z_58', 'Z_59', 'Z_60', 'Z_61', 'Z_62', 'Z_63',
'Z_64', 'Z_65', 'Z_66', 'Z_67', 'p_scale', 'p_rx', 'p_ry', 'p_rz',
'p_tx', 'p_ty', 'p_0', 'p_1', 'p_2', 'p_3', 'p_4', 'p_5', 'p_6',
'p_7', 'p_8', 'p_9', 'p_10', 'p_11', 'p_12', 'p_13', 'p_14', 'p_15',
'p_16', 'p_17', 'p_18', 'p_19', 'p_20', 'p_21', 'p_22', 'p_23',
'p_24', 'p_25', 'p_26', 'p_27', 'p_28', 'p_29', 'p_30', 'p_31',
'p_32', 'p_33', 'AU01_r', 'AU02_r', 'AU04_r', 'AU05_r', 'AU06_r',
'AU07_r', 'AU09_r', 'AU10_r', 'AU12_r', 'AU14_r', 'AU15_r',
'AU17_r', 'AU20_r', 'AU23_r', 'AU25_r', 'AU26_r', 'AU45_r',
'AU01_c', 'AU02_c', 'AU04_c', 'AU05_c', 'AU06_c', 'AU07_c',
'AU09_c', 'AU10_c', 'AU12_c', 'AU14_c', 'AU15_c', 'AU17_c',
'AU20_c', 'AU23_c', 'AU25_c', 'AU26_c', 'AU28_c', 'AU45_c']
Returns:
dataframe of processed facial expressions
"""
d = pd.read_csv(openfacefile, sep=",")
d.columns = d.columns.str.strip(" ")
# Check if features argument is passed and return only those features, else return basic emotion/AU features
if isinstance(features, list):
try:
d = d[features]
except:
raise KeyError([features, "not in openfacefile"])
elif isinstance(features, type(None)):
features = OPENFACE_ORIG_COLUMNS
try:
d = d[features]
except:
pass
return feat.Fex(
d,
filename=openfacefile,
au_columns=openface_AU_columns,
emotion_columns=None,
facebox_columns=None,
landmark_columns=openface_2d_landmark_columns,
facepose_columns=openface_facepose_columns,
gaze_columns=openface_gaze_columns,
time_columns=openface_time_columns,
detector="OpenFace",
)
def read_affectiva(affectivafile, orig_cols=False):
"""
This function reads in affectiva file processed through the https://github.com/cosanlab/affectiva-api-app.
Args:
affectivafile: file to read
orig_cols: If True, convert original colnames to FACS names
Returns:
Fex of processed facial expressions
"""
d = pd.read_json(affectivafile, lines=True)
rep_dict = {
"anger": "Anger",
"attention": "Attention",
"contempt": "Contempt",
"disgust": "Disgust",
"engagement": "Engagement",
"fear": "Fear",
"joy": "Joy",
"sadness": "Sadness",
"smirk": "Smirk",
"surprise": "Surprise",
"valence": "Valence",
"browFurrow": "AU04",
"smile": "AU12",
"browRaise": "AU02",
"cheekRaise": "AU06",
"chinRaise": "AU17",
"dimpler": "AU14",
"eyeClosure": "AU43",
"eyeWiden": "AU05",
"innerBrowRaise": "AU01",
"jawDrop": "AU26",
"lidTighten": "AU07",
"lipCornerDepressor": "AU15",
"lipPress": "AU24",
"lipPucker": "AU18",
"lipStretch": "AU20",
"lipSuck": "AU28",
"mouthOpen": "AU25",
"noseWrinkle": "AU09",
"upperLipRaise": "AU10",
}
affectiva_au_columns = [col for col in rep_dict.values() if "AU" in col]
affectiva_emotion_columns = list(set(rep_dict.values()) - set(affectiva_au_columns))
if not orig_cols:
new_cols = []
for col in d.columns:
try:
new_cols.append(rep_dict[col])
except:
new_cols.append(col)
d.columns = new_cols
return feat.Fex(
d,
filename=affectivafile,
au_columns=affectiva_au_columns,
emotion_columns=affectiva_emotion_columns,
detector="Affectiva",
)
def wavelet(freq, num_cyc=3, sampling_freq=30.0):
"""Create a complex Morlet wavelet.
Creates a complex Morlet wavelet by windowing a cosine function by a Gaussian. All formulae taken from Cohen, 2014 Chaps 12 + 13
Args:
freq: (float) desired frequence of wavelet
num_cyc: (float) number of wavelet cycles/gaussian taper. Note that smaller cycles give greater temporal precision and that larger values give greater frequency precision; (default: 3)
sampling_freq: (float) sampling frequency of original signal.
Returns:
wav: (ndarray) complex wavelet
"""
dur = (1 / freq) * num_cyc
time = np.arange(-dur, dur, 1.0 / sampling_freq)
# Cosine component
sin = np.exp(2 * np.pi * 1j * freq * time)
# Gaussian component
sd = num_cyc / (2 * np.pi * freq) # standard deviation
gaus = np.exp(-(time ** 2.0) / (2.0 * sd ** 2.0))
return sin * gaus
def calc_hist_auc(vals, hist_range=None):
"""Calculate histogram area under the curve.
This function follows the bag of temporal feature analysis as described in Bartlett, M. S., Littlewort, G. C., Frank, M. G., & Lee, K. (2014). Automatic decoding of facial movements reveals deceptive pain expressions. Current Biology, 24(7), 738-743. The function receives convolved data, squares the values, finds 0 crossings to calculate the AUC(area under the curve) and generates a 6 exponentially-spaced-bin histogram for each data.
Args:
vals:
Returns:
Series of histograms
"""
# Square values
vals = [elem ** 2 if elem > 0 else -1 * elem ** 2 for elem in vals]
# Get 0 crossings
crossings = np.where(np.diff(np.sign(vals)))[0]
pos, neg = [], []
for i in range(len(crossings)):
if i == 0:
cross = vals[: crossings[i]]
elif i == len(crossings) - 1:
cross = vals[crossings[i] :]
else:
cross = vals[crossings[i] : crossings[i + 1]]
if cross:
auc = simps(cross)
if auc > 0:
pos.append(auc)
elif auc < 0:
neg.append(np.abs(auc))
if not hist_range:
hist_range = np.logspace(0, 5, 7) # bartlett 10**0~ 10**5
out = pd.Series(
np.hstack([np.histogram(pos, hist_range)[0], np.histogram(neg, hist_range)[0]])
)
return out
def softmax(x):
"""
Softmax function to change log likelihood evidence values to probabilities.
Use with Evidence values from FACET.
Args:
x: value to softmax
"""
return 1.0 / (1 + 10.0 ** -(x))
### Functions for face registration ###
neutral = np.array(
[
[37.514994071403564, 118.99554304280198],
[38.347467261268164, 135.93119298564565],
[40.77550102890035, 152.83280452855092],
[44.109285817364565, 169.1279402172728],
[49.982831719005134, 184.53328583541997],
[59.18894827224358, 198.01613609507382],
[70.41509055106278, 209.2829929016551],
[83.65962787515429, 217.8257797774197],
[98.6747861407431, 220.00636721799012],
[113.36502269321642, 217.35622273914575],
[126.09720342342395, 208.61554139570768],
[137.37278216681938, 197.26636201144768],
[146.15109522110836, 183.95054534968338],
[151.7203254679301, 168.70328047716666],
[154.90171533762026, 152.54959546525106],
[157.01705755745184, 136.0791940145902],
[157.81240022435486, 119.28714731581948],
[45.87342275811805, 109.05187535227455],
[53.83702202368147, 101.43275042887998],
[65.61231530318975, 99.44649503101734],
[77.49003981781006, 101.34627038289048],
[88.31833069100318, 105.66229287035226],
[108.80512997829634, 105.18583248508406],
[120.180518838434, 100.84850879934683],
[131.6712265255873, 99.22426247038426],
[142.8040873694427, 101.39810664193074],
[150.0927107560624, 108.74640334130906],
[98.93955016899183, 117.16643104438056],
[99.01139789533919, 128.44882090731443],
[99.09059391932496, 139.71335180079416],
[99.22411612922204, 151.32196734885628],
[85.97238779261347, 158.19140086045783],
[92.2064468619444, 160.61659751751895],
[98.67862473703293, 162.56437315387998],
[105.26853264390792, 160.62509055875418],
[111.14227856687825, 158.32687793454852],
[59.22833204018989, 118.63189570941351],
[66.08746862218415, 114.39263501569359],
[74.66886627073309, 114.59919005618073],
[81.80683310969295, 120.00819188630955],
[74.34426159695313, 121.7055175900537],
[65.7237769427475, 121.82223252349223],
[114.7522889881524, 119.90654628204749],
[122.29832379941683, 114.26349216485505],
[130.61954432603773, 114.38399042631573],
[137.03708638863128, 118.48489574810866],
[131.21518765419418, 121.51217888800802],
[122.97461037812238, 121.56526096419978],
[75.39827955150834, 179.4070640864827],
[84.55991401346533, 176.2145796986134],
[92.90235587470646, 174.4243211955652],
[98.56534031739243, 176.0653659731581],
[104.97777372929698, 174.45766843787231],
[113.1125749468363, 176.39970964033202],
[121.19973608809934, 179.19790184992027],
[113.16310623913299, 185.69051008752652],
[105.26365304952049, 188.31443911070232],
[98.41771871303214, 188.9656394139811],
[92.2240282658315, 188.38538897373022],
[84.05109731022314, 185.74954657843966],
[79.18422925303048, 179.8065722186372],
[92.7172317110304, 179.5201781895618],
[98.52973444977067, 180.1630365496041],
[105.05932172975814, 179.42368920844928],
[117.43706438358437, 179.7109259873213],
[104.90869094557993, 180.32984591574524],
[98.35933953480642, 181.15981769637827],
[92.49485174856926, 180.48994809345996],
]
)
def registration(face_lms, neutral=neutral, method="fullface"):
"""Register faces to a neutral face.
Affine registration of face landmarks to neutral face.
Args:
face_lms(array): face landmarks to register with shape (n,136). Columns 0~67 are x coordinates and 68~136 are y coordinates
neutral(array): target neutral face array that face_lm will be registered
method(str or list): If string, register to all landmarks ('fullface', default), or inner parts of face nose,mouth,eyes, and brows ('inner'). If list, pass landmarks to register to e.g. [27, 28, 29, 30, 36, 39, 42, 45]
Return:
registered_lms: registered landmarks in shape (n,136)
"""
assert type(face_lms) == np.ndarray, TypeError("face_lms must be type np.ndarray")
assert face_lms.ndim == 2, ValueError("face_lms must be shape (n, 136)")
assert face_lms.shape[1] == 136, ValueError("Must have 136 landmarks")
registered_lms = []
for row in face_lms:
face = [row[:68], row[68:]]
face = np.array(face).T
# Rotate face
primary = np.array(face)
secondary = np.array(neutral)
n = primary.shape[0]
pad = lambda x: np.hstack([x, np.ones((x.shape[0], 1))])
unpad = lambda x: x[:, :-1]
X1, Y1 = pad(primary), pad(secondary)
if type(method) == str:
if method == "fullface":
A, res, rank, s = np.linalg.lstsq(X1, Y1, rcond=None)
elif method == "inner":
A, res, rank, s = np.linalg.lstsq(X1[17:, :], Y1[17:, :], rcond=None)
else:
raise ValueError("method is either 'fullface' or 'inner'")
elif type(method) == list:
A, res, rank, s = np.linalg.lstsq(X1[method], Y1[method], rcond=None)
else:
raise TypeError(
"method is string ('fullface','inner') or list of landmarks"
)
transform = lambda x: unpad(np.dot(pad(x), A))
registered_lms.append(transform(primary).T.reshape(1, 136).ravel())
return np.array(registered_lms)
def convert68to49(points):
"""Convert landmark form 68 to 49
Function slightly modified from https://github.com/D-X-Y/landmark-detection/blob/7bc7a5dbdbda314653124a4596f3feaf071e8589/SAN/lib/datasets/dataset_utils.py#L169 to fit pytorch tensors. Converts 68 point landmarks to 49 point landmarks
Args:
points: landmark points of shape (2,68) or (3,68)
Return:
cpoints: converted 49 landmark points of shape (2,49)
"""
assert (
len(points.shape) == 2
and (points.shape[0] == 3 or points.shape[0] == 2)
and points.shape[1] == 68
), "The shape of points is not right : {}".format(points.shape)
if isinstance(points, torch.Tensor):
points = points.clone()
out = torch.ones((68,), dtype=torch.bool)
elif type(points) is np.ndarray:
points = points.copy()
out = np.ones((68,)).astype("bool")
out[[0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 60, 64]] = False
cpoints = points[:, out]
assert len(cpoints.shape) == 2 and cpoints.shape[1] == 49
return cpoints
class BBox(object):
# https://github.com/cunjian/pytorch_face_landmark/
# bbox is a list of [left, right, top, bottom]
def __init__(self, bbox):
self.left = bbox[0]
self.right = bbox[1]
self.top = bbox[2]
self.bottom = bbox[3]
self.x = bbox[0]
self.y = bbox[2]
self.w = bbox[1] - bbox[0]
self.h = bbox[3] - bbox[2]
# scale to [0,1]
def projectLandmark(self, landmark):
landmark_ = np.asarray(np.zeros(landmark.shape))
for i, point in enumerate(landmark):
landmark_[i] = ((point[0] - self.x) / self.w, (point[1] - self.y) / self.h)
return landmark_
# landmark of (5L, 2L) from [0,1] to real range
def reprojectLandmark(self, landmark):
landmark_ = np.asarray(np.zeros(landmark.shape))
for i, point in enumerate(landmark):
x = point[0] * self.w + self.x
y = point[1] * self.h + self.y
landmark_[i] = (x, y)
return landmark_
def drawLandmark(img, bbox, landmark):
"""Draws face bounding box and landmarks.
From https://github.com/cunjian/pytorch_face_landmark/
Args:
img ([type]): gray or RGB
bbox ([type]): type of BBox
landmark ([type]): reproject landmark of (5L, 2L)
Returns:
img marked with landmark and bbox
"""
img_ = img.copy()
cv2.rectangle(
img_, (bbox.left, bbox.top), (bbox.right, bbox.bottom), (0, 0, 255), 2
)
for x, y in landmark:
cv2.circle(img_, (int(x), int(y)), 3, (0, 255, 0), -1)
return img_
def drawLandmark_multiple(img, bbox, landmark):
"""Draw multiple landmarks.
From https://github.com/cunjian/pytorch_face_landmark/
Args:
img ([type]): gray or RGB
bbox ([type]): type of BBox
landmark ([type]): reproject landmark of (5L, 2L)
Returns:
img marked with landmark and bbox
"""
cv2.rectangle(img, (bbox.left, bbox.top), (bbox.right, bbox.bottom), (0, 0, 255), 2)
for x, y in landmark:
cv2.circle(img, (int(x), int(y)), 2, (0, 255, 0), -1)
return img
def padding(img, expected_size):
"""
DOCUMENTATION GOES HERE
"""
desired_size = expected_size
delta_width = desired_size - img.size[0]
delta_height = desired_size - img.size[1]
pad_width = delta_width // 2
pad_height = delta_height // 2
padding = (pad_width, pad_height, delta_width - pad_width, delta_height - pad_height)
return ImageOps.expand(img, padding)
def resize_with_padding(img, expected_size):
"""
DOCUMENTATION GOES HERE
"""
img.thumbnail((expected_size[0], expected_size[1]))
# print(img.size)
delta_width = expected_size[0] - img.size[0]
delta_height = expected_size[1] - img.size[1]
pad_width = delta_width // 2
pad_height = delta_height // 2
padding = (pad_width, pad_height, delta_width - pad_width, delta_height - pad_height)
return ImageOps.expand(img, padding)
def align_face_68pts(img, img_land, box_enlarge, img_size=112):
"""Performs affine transformation to align the images by eyes.
Performs affine alignment including eyes.
Args:
img: gray or RGB
img_land: 68 system flattened landmarks, shape:(136)
box_enlarge: relative size of face on the image. Smaller value indicate larger proportion
img_size = output image size
Return:
aligned_img: the aligned image
new_land: the new landmarks
"""
leftEye0 = (img_land[2 * 36] + img_land[2 * 37] + img_land[2 * 38] + img_land[2 * 39] + img_land[2 * 40] +
img_land[2 * 41]) / 6.0
leftEye1 = (img_land[2 * 36 + 1] + img_land[2 * 37 + 1] + img_land[2 * 38 + 1] + img_land[2 * 39 + 1] +
img_land[2 * 40 + 1] + img_land[2 * 41 + 1]) / 6.0
rightEye0 = (img_land[2 * 42] + img_land[2 * 43] + img_land[2 * 44] + img_land[2 * 45] + img_land[2 * 46] +
img_land[2 * 47]) / 6.0
rightEye1 = (img_land[2 * 42 + 1] + img_land[2 * 43 + 1] + img_land[2 * 44 + 1] + img_land[2 * 45 + 1] +
img_land[2 * 46 + 1] + img_land[2 * 47 + 1]) / 6.0
deltaX = (rightEye0 - leftEye0)
deltaY = (rightEye1 - leftEye1)
l = math.sqrt(deltaX * deltaX + deltaY * deltaY)
sinVal = deltaY / l
cosVal = deltaX / l
mat1 = np.mat([[cosVal, sinVal, 0], [-sinVal, cosVal, 0], [0, 0, 1]])
mat2 = np.mat([[leftEye0, leftEye1, 1], [rightEye0, rightEye1, 1], [img_land[2 * 30], img_land[2 * 30 + 1], 1],
[img_land[2 * 48], img_land[2 * 48 + 1], 1], [img_land[2 * 54], img_land[2 * 54 + 1], 1]])
mat2 = (mat1 * mat2.T).T
cx = float((max(mat2[:, 0]) + min(mat2[:, 0]))) * 0.5
cy = float((max(mat2[:, 1]) + min(mat2[:, 1]))) * 0.5
if (float(max(mat2[:, 0]) - min(mat2[:, 0])) > float(max(mat2[:, 1]) - min(mat2[:, 1]))):
halfSize = 0.5 * box_enlarge * float((max(mat2[:, 0]) - min(mat2[:, 0])))
else:
halfSize = 0.5 * box_enlarge * float((max(mat2[:, 1]) - min(mat2[:, 1])))
scale = (img_size - 1) / 2.0 / halfSize
mat3 = np.mat([[scale, 0, scale * (halfSize - cx)], [0, scale, scale * (halfSize - cy)], [0, 0, 1]])
mat = mat3 * mat1
aligned_img = cv2.warpAffine(img, mat[0:2, :], (img_size, img_size), cv2.INTER_LINEAR, borderValue=(128, 128, 128))
land_3d = np.ones((int(len(img_land)/2), 3))
land_3d[:, 0:2] = np.reshape(np.array(img_land), (int(len(img_land)/2), 2))
mat_land_3d = np.mat(land_3d)
new_land = np.array((mat * mat_land_3d.T).T)
new_land = np.array(list(zip(new_land[:,0], new_land[:,1]))).astype(int)
return aligned_img, new_land