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targets.py
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targets.py
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# module containing the targets for the external compton radiation
import numpy as np
from astropy.constants import c, G, M_sun, k_B, sigma_sb
import astropy.units as u
from astropy.coordinates import Distance
from astropy.modeling.models import BlackBody
from ..utils.conversion import mec2, nu_to_epsilon_prime
from ..utils.math import axes_reshaper
__all__ = [
"lines_dictionary",
"CMB",
"SSDisk",
"PointSourceBehindJet",
"SphericalShellBLR",
"RingDustTorus",
]
# dictionary with all the available spectral lines
lines_dictionary = {
"Lyepsilon": {
"lambda": 937.80 * u.Angstrom,
"R_Hbeta_ratio": 2.7,
"L_Hbeta_ratio": 0.24,
},
"Lydelta": {
"lambda": 949.74 * u.Angstrom,
"R_Hbeta_ratio": 2.8,
"L_Hbeta_ratio": 0.24,
},
"CIII": {
"lambda": 977.02 * u.Angstrom,
"R_Hbeta_ratio": 0.83,
"L_Hbeta_ratio": 0.60,
},
"NIII": {
"lambda": 990.69 * u.Angstrom,
"R_Hbeta_ratio": 0.85,
"L_Hbeta_ratio": 0.60,
},
"Lybeta": {
"lambda": 1025.72 * u.Angstrom,
"R_Hbeta_ratio": 1.2,
"L_Hbeta_ratio": 1.1,
},
"OVI": {
"lambda": 1033.83 * u.Angstrom,
"R_Hbeta_ratio": 1.2,
"L_Hbeta_ratio": 1.1,
},
"ArI": {
"lambda": 1066.66 * u.Angstrom,
"R_Hbeta_ratio": 4.5,
"L_Hbeta_ratio": 0.094,
},
"Lyalpha": {
"lambda": 1215.67 * u.Angstrom,
"R_Hbeta_ratio": 0.27,
"L_Hbeta_ratio": 12,
},
"OI": {
"lambda": 1304.35 * u.Angstrom,
"R_Hbeta_ratio": 4.0,
"L_Hbeta_ratio": 0.23,
},
"SiII": {
"lambda": 1306.82 * u.Angstrom,
"R_Hbeta_ratio": 4.0,
"L_Hbeta_ratio": 0.23,
},
"SiIV": {
"lambda": 1396.76 * u.Angstrom,
"R_Hbeta_ratio": 0.83,
"L_Hbeta_ratio": 1.0,
},
"OIV]": {
"lambda": 1402.06 * u.Angstrom,
"R_Hbeta_ratio": 0.83,
"L_Hbeta_ratio": 1.0,
},
"CIV": {
"lambda": 1549.06 * u.Angstrom,
"R_Hbeta_ratio": 0.83,
"L_Hbeta_ratio": 2.9,
},
"NIV": {
"lambda": 1718.55 * u.Angstrom,
"R_Hbeta_ratio": 3.8,
"L_Hbeta_ratio": 0.30,
},
"AlII": {
"lambda": 1721.89 * u.Angstrom,
"R_Hbeta_ratio": 3.8,
"L_Hbeta_ratio": 0.30,
},
"CIII]": {
"lambda": 1908.73 * u.Angstrom,
"R_Hbeta_ratio": 0.46,
"L_Hbeta_ratio": 1.8,
},
"[NeIV]": {
"lambda": 2423.83 * u.Angstrom,
"R_Hbeta_ratio": 5.8,
"L_Hbeta_ratio": 0.051,
},
"MgII": {
"lambda": 2798.75 * u.Angstrom,
"R_Hbeta_ratio": 0.45,
"L_Hbeta_ratio": 1.7,
},
"Hdelta": {
"lambda": 4102.89 * u.Angstrom,
"R_Hbeta_ratio": 3.4,
"L_Hbeta_ratio": 0.12,
},
"Hgamma": {
"lambda": 4341.68 * u.Angstrom,
"R_Hbeta_ratio": 3.2,
"L_Hbeta_ratio": 0.30,
},
"HeII": {
"lambda": 4687.02 * u.Angstrom,
"R_Hbeta_ratio": 0.63,
"L_Hbeta_ratio": 0.016,
},
"Hbeta": {
"lambda": 4862.68 * u.Angstrom,
"R_Hbeta_ratio": 1.0,
"L_Hbeta_ratio": 1.0,
},
"[ClIII]": {
"lambda": 5539.43 * u.Angstrom,
"R_Hbeta_ratio": 4.8,
"L_Hbeta_ratio": 0.039,
},
"HeI": {
"lambda": 5877.29 * u.Angstrom,
"R_Hbeta_ratio": 0.39,
"L_Hbeta_ratio": 0.092,
},
"Halpha": {
"lambda": 6564.61 * u.Angstrom,
"R_Hbeta_ratio": 1.3,
"L_Hbeta_ratio": 3.6,
},
}
class CMB:
"""Cosmic Microwave Background radiation, approximated as an isotropic
monochromatic target.
Parameters
----------
z : float
redshift at which the CMB is considered
"""
def __init__(self, z):
self.name = "Cosmic Microwave Background Radiation"
a = 7.5657 * 1e-15 * u.Unit("erg cm-3 K-4") # radiation constant
T = 2.72548 * u.K
self.u_0 = (a * np.power(T, 4)).to("erg cm-3") * np.power(1 + z, 4)
self.epsilon_0 = (2.7 * k_B * T / mec2).to_value("") * (1 + z)
def u(self, blob=None):
"""integral energy density of the CMB
Parameters
----------
blob : :class:`~agnpy.emission_regions.Blob`
if provided, the energy density is computed in a reference frame
comvoing with the blob
"""
if blob:
return self.u_0 * np.power(blob.Gamma, 2) * (1 + np.power(blob.Beta, 2) / 3)
else:
return self.u_0
class PointSourceBehindJet:
"""Monochromatic point source behind the jet.
Parameters
----------
L_0 : :class:`~astropy.units.Quantity`
luminosity of the source
epsilon_0 : float
dimensionless monochromatic energy of the source
"""
def __init__(self, L_0, epsilon_0):
self.name = "Monochromatic Point Source Behind the Jet"
self.L_0 = L_0
self.epsilon_0 = epsilon_0
def u(self, r, blob=None):
"""integral energy density of the point source at distance r along the
jet axis
Parameters
----------
r : :class:`~astropy.units.Quantity`
array of distances along the jet axis
blob : :class:`~agnpy.emission_regions.Blob`
if provided, the energy density is computed in a reference frame
comvoing with the blob
"""
u_0 = (self.L_0 / (4 * np.pi * c * np.power(r, 2))).to("erg cm-3")
if blob:
return u_0 / (np.power(blob.Gamma, 2) * np.power(1 + blob.Beta, 2))
else:
return u_0
class SSDisk:
"""[Shakura1973]_ accretion disk as modeled by [Dermer2002]_
Parameters
----------
M_BH : :class:`~astropy.units.Quantity`
Black Hole mass
L_disk : :class:`~astropy.units.Quantity`
luminosity of the disk
eta : float
accretion efficiency
R_in : :class:`~astropy.units.Quantity` / float
inner disk radius
R_out : :class:`~astropy.units.Quantity` / float
outer disk radius
R_g_units : bool
whether or not input radiuses are specified in units of the gravitational radius
"""
def __init__(self, M_BH, L_disk, eta, R_in, R_out, R_g_units=False):
self.name = "Shakura Sunyaev Accretion Disk"
# masses and luminosities
self.M_BH = M_BH
self.M_8 = (M_BH / (1e8 * M_sun)).to_value("")
self.L_Edd = 1.26 * 1e46 * self.M_8 * u.Unit("erg s-1")
self.L_disk = L_disk
# fraction of the Eddington luminosity at which the disk is accreting
self.l_Edd = (self.L_disk / self.L_Edd).to_value("")
self.eta = eta
self.m_dot = (self.L_disk / (self.eta * np.power(c, 2))).to("g s-1")
# gravitational radius
self.R_g = (G * self.M_BH / np.power(c, 2)).to("cm")
if R_g_units:
# check that numbers have been passed
R_in_unit_check = isinstance(R_in, (int, float))
R_out_unit_check = isinstance(R_out, (int, float))
if not R_in_unit_check or not R_out_unit_check:
raise TypeError("R_in / R_out passed with units, int / float expected")
self.R_in = R_in * self.R_g
self.R_out = R_out * self.R_g
self.R_in_tilde = R_in
self.R_out_tilde = R_out
else:
# check that quantities have been passed
R_in_unit_check = isinstance(R_in, u.Quantity)
R_out_unit_check = isinstance(R_out, u.Quantity)
if R_in_unit_check and R_out_unit_check:
self.R_in = R_in
self.R_out = R_out
self.R_in_tilde = (self.R_in / self.R_g).to_value("")
self.R_out_tilde = (self.R_out / self.R_g).to_value("")
else:
raise TypeError("R_in / R_out passed without units")
# array of R_tile values
self.R_tilde = np.linspace(self.R_in_tilde, self.R_out_tilde)
def __str__(self):
return (
f"* Shakura Sunyaev accretion disk:\n"
+ f" - M_BH (central black hole mass): {self.M_BH.cgs:.2e}\n"
+ f" - L_disk (disk luminosity): {self.L_disk.cgs:.2e}\n"
+ f" - eta (accretion efficiency): {self.eta:.2e}\n"
+ f" - dot(m) (mass accretion rate): {self.m_dot.cgs:.2e}\n"
+ f" - R_in (disk inner radius): {self.R_in.cgs:.2e}\n"
+ f" - R_out (disk inner radius): {self.R_out.cgs:.2e}"
)
# staticmethods to be used in SED calculations without using a class instance
@staticmethod
def evaluate_mu_from_r_tilde(R_in_tilde, R_out_tilde, r_tilde, size=100):
r"""array of cosine angles, spanning from :math:`R_{\mathrm{in}}` to
:math:`R_{\mathrm{out}}`, viewed from a given height :math:`\tilde{r}`
above the disk, Eq. 72 and 73 in [Finke2016]_."""
mu_min = 1 / np.sqrt(1 + np.power((R_out_tilde / r_tilde), 2))
mu_max = 1 / np.sqrt(1 + np.power((R_in_tilde / r_tilde), 2))
return np.linspace(mu_min, mu_max, size)
@staticmethod
def evaluate_phi_disk_mu(mu, R_in_tilde, r_tilde):
"""dependency of the radiant surface-energy flux from the disk radius,
here obtained from the cosine of the zenith `mu` and the height above
the disk `r_tilde` (in graviational radius units),
Eq. 63 [Dermer2009]_"""
R_tilde = r_tilde * np.sqrt(np.power(mu, -2) - 1)
return 1 - np.sqrt(R_in_tilde / R_tilde)
@staticmethod
def evaluate_epsilon(L_disk, M_BH, eta, R_tilde):
"""evaluate the dimensionless energy emitted at the radius `R_tilde`
Eq. 65 [Dermer2009]_"""
M_8 = (M_BH / (1e8 * M_sun)).to_value("")
L_Edd = 1.26 * 1e46 * M_8 << u.Unit("erg s-1")
l_Edd = (L_disk / L_Edd).to_value("")
xi = np.power(l_Edd / (M_8 * eta), 1 / 4)
return 2.7 * 1e-4 * xi * np.power(R_tilde, -3 / 4)
@staticmethod
def evaluate_epsilon_mu(L_disk, M_BH, eta, mu, r_tilde):
"""same as :func:`~agnpy.targets.SSDisk.evaluate_epsilon` but
considering the cosine of the subtended zenith `mu` and the height
above the disk `r` instead of the radius `R_tilde`"""
R_tilde = r_tilde * np.sqrt(np.power(mu, -2) - 1)
return SSDisk.evaluate_epsilon(L_disk, M_BH, eta, R_tilde)
@staticmethod
def evaluate_T(R, M_BH, m_dot, R_in):
"""black body temperature (K) at the radial coordinate R"""
phi = 1 - np.sqrt((R_in / R).to_value(""))
val = (3 * G * M_BH * m_dot * phi) / (8 * np.pi * np.power(R, 3) * sigma_sb)
return np.power(val, 1 / 4).to("K")
def epsilon_mu(self, mu, r_tilde):
return self.evaluate_epsilon_mu(self.L_disk, self.M_BH, self.eta, mu, r_tilde)
def epsilon(self, R_tilde):
r"""dimensionless energy emitted at the disk radius :math:`\tilde{R}`"""
return self.evaluate_epsilon(self.L_disk, self.M_BH, self.eta, R_tilde)
def phi_disk_mu(self, mu, r_tilde):
return self.evaluate_phi_disk_mu(mu, self.R_in_tilde, r_tilde)
def phi_disk(self, R_tilde):
return 1 - np.sqrt(self.R_in_tilde / R_tilde)
def T(self, R):
r"""temperature of the disk at radius :math:`R`.
Eq. 64 in [Dermer2009]_."""
return self.evaluate_T(R, self.M_BH, self.m_dot, self.R_in)
@staticmethod
def evaluate_multi_T_bb_sed(nu, z, M_BH, m_dot, R_in, R_out, d_L, mu_s=1):
r"""Evaluate a multi-temperature black body SED in the case of the SS Disk.
The SED is calculated for an observer far away from the disk (:math:`d_L \gg R`)
with the following:
.. math::
\nu F_{\nu} \approx \mu_s \, \nu \frac{2 \pi}{d_L^2}
\int_{R_{\rm in}}^{R_{\rm out}}{\rm d}R \, R \, I_{\nu}(T(R)),
where :math:`I_{\nu}` is Planck's law, :math:`R` the radial coordinate
along the disk, and :math:`d_L` the luminosity distance. :math:`\mu_s`
is the cosine of the angle between the disk axis and the observer's line of sight.
Parameters
----------
nu : :class:`~astropy.units.Quantity`
array of frequencies, in Hz, to compute the sed
**note** these are observed frequencies (observer frame)
z : float
redshift of the source
M_BH : :class:`~astropy.units.Quantity`
Black Hole mass
m_dot : float
mass accretion rate
R_in : :class:`~astropy.units.Quantity`
inner disk radius
R_out : :class:`~astropy.units.Quantity`
outer disk radius
d_L : :class:`~astropy.units.Quantity`
luminosity of the source
mu_s : float
cosine of the angle between the observer line of sight and the disk axis
"""
# correct for redshift
nu *= 1 + z
# array to integrate R
R = np.linspace(R_in, R_out, 100)
_R, _nu = axes_reshaper(R, nu)
_T = SSDisk.evaluate_T(_R, M_BH, m_dot, R_in)
_I_nu = BlackBody().evaluate(_nu, _T, scale=1)
integrand = _R / np.power(d_L, 2) * _I_nu * u.sr
F_nu = 2 * np.pi * np.trapz(integrand, R, axis=0)
return mu_s * (nu * F_nu).to("erg cm-2 s-1")
@staticmethod
def evaluate_multi_T_bb_norm_sed(
nu, z, L_disk, M_BH, m_dot, R_in, R_out, d_L, mu_s=1
):
"""Evaluate a normalised, multi-temperature black body SED as in
:func:`~targets.SSDisk.evaluate_multi_T_bb_sed`, but the integral luminosity
is set to be equal to `L_disk`."""
sed_disk = SSDisk.evaluate_multi_T_bb_sed(
nu, z, M_BH, m_dot, R_in, R_out, d_L, mu_s
)
# renormalise, the factor 2 includes the two sides of the Disk
L = 2 * (np.trapz(sed_disk / nu, nu) * 4 * np.pi * d_L ** 2).to("erg s-1")
norm = (L_disk / L).to_value("")
return norm * sed_disk
def sed_flux(self, nu, z, mu_s=1):
r"""evaluate the multi-temperature black body SED for this SS Disk, refer
to :func:`~targets.SSDisk.evaluate_multi_T_bb_sed` and to
:func:`~targets.SSDisk.evaluate_multi_T_bb_norm_sed`
"""
d_L = Distance(z=z).to("cm")
return SSDisk.evaluate_multi_T_bb_norm_sed(
nu, z, self.L_disk, self.M_BH, self.m_dot, self.R_in, self.R_out, d_L, mu_s
)
def u(self, r, blob=None):
"""integral energy density of radiation produced by the Disk at the distance
r along the jet axis. Integral over the solid angle of Eq. 69 in [Dermer2009]_.
Parameters
----------
r : :class:`~astropy.units.Quantity`
array of distances along the jet axis
blob : :class:`~agnpy.emission_regions.Blob`
if provided, the energy density is computed in a reference frame
comvoing with the blob
"""
r_tilde = (r / self.R_g).to_value("")
mu = self.evaluate_mu_from_r_tilde(self.R_in_tilde, self.R_out_tilde, r_tilde)
prefactor = (
3
* self.l_Edd
* self.L_Edd
* self.R_g
/ (8 * np.pi * c * self.eta * np.power(r, 3))
)
integrand = (
1
/ mu
* np.power(np.power(mu, -2) - 1, -3 / 2)
* self.evaluate_phi_disk_mu(mu, self.R_in_tilde, r_tilde)
)
if blob:
mu_prime = (mu - blob.Beta) / (1 - blob.Beta * mu)
integrand_prefactor = 1 / (
np.power(blob.Gamma, 6)
* np.power(1 - blob.Beta * mu, 2)
* np.power(1 + blob.Beta * mu_prime, 4)
)
integrand *= integrand_prefactor
integral = np.trapz(integrand, mu, axis=0)
return (prefactor * integral).to("erg cm-3")
class SphericalShellBLR:
"""Spherical Shell Broad Line Region, from [Finke2016]_.
Each line is emitted from an infinitesimally thin spherical shell.
Parameters
----------
L_disk : :class:`~astropy.units.Quantity`
Luminosity of the disk whose radiation is being reprocessed by the BLR
xi_line : float
fraction of the disk radiation reprocessed by the BLR
line : string
type of line emitted
R_line : :class:`~astropy.units.Quantity`
radius of the BLR spherical shell
"""
def __init__(self, L_disk, xi_line, line, R_line):
self.name = "SphericalShellBLR"
self.L_disk = L_disk
self.xi_line = xi_line
if line not in lines_dictionary:
raise NameError(f"{line} not available in the line dictionary")
self.line = line
self.lambda_line = lines_dictionary[line]["lambda"]
self.epsilon_line = (
self.lambda_line.to("erg", equivalencies=u.spectral()) / mec2
).to_value("")
self.R_line = R_line
def __str__(self):
return (
f"* Spherical Shell Broad Line Region:\n"
+ f" - L_disk (accretion disk luminosity): {self.L_disk.cgs:.2e}\n"
+ f" - xi_line (fraction of the disk radiation reprocessed by the BLR): {self.xi_line:.2e}\n"
+ f" - line (type of emitted line): {self.line}, lambda = {self.lambda_line.cgs:.2e}\n"
+ f" - R_line (radius of the BLR shell): {self.R_line.cgs:.2e}\n"
)
def print_lines_list():
r"""Print the list of the available spectral lines.
The dictionary with the possible emission lines is taken from Table 5 in
[Finke2016]_ and contains the value of the line wavelength and the ratio of
its radius to the radius of the :math:`H_{\beta}` shell, not used at the moment.
"""
for line in lines_dictionary.keys():
print(f"{line}: {lines_dictionary[line]}")
def u(self, r, blob=None):
"""Density of radiation produced by the BLR at the distance r along the
jet axis. Integral over the solid angle of Eq. 80 in [Finke2016]_.
Parameters
----------
r : :class:`~astropy.units.Quantity`
array of distances along the jet axis
blob : :class:`~agnpy.emission_regions.Blob`
if provided, the energy density is computed in a reference frame
comvoing with the blob
"""
mu = np.linspace(-1, 1)
_mu = mu.reshape(mu.size, 1)
_r = r.reshape(1, r.size)
_x2 = np.power(_r, 2) + np.power(self.R_line, 2) - 2 * _r * self.R_line * _mu
prefactor = self.xi_line * self.L_disk / (8 * np.pi * c)
integrand = 1 / _x2
if blob:
_mu_star = np.sqrt(
1 - np.power(self.R_line, 2) / _x2 * (1 - np.power(_mu, 2))
)
integrand_prefactor = np.power(blob.Gamma, 2) * np.power(
1 - blob.Beta * _mu_star, 2
)
integrand *= integrand_prefactor
integral = np.trapz(integrand, mu, axis=0)
return (prefactor * integral).to("erg cm-3")
class RingDustTorus:
"""Dust Torus as infinitesimally thin annulus, from [Finke2016]_.
For the Compton scattering monochromatic emission at the peak energy of the
Black Body spectrum is considered.
Parameters
----------
L_disk : :class:`~astropy.units.Quantity`
Luminosity of the disk whose radiation is being reprocessed by the Torus
xi_dt : float
fraction of the disk radiation reprocessed
T_dt : :class:`~astropy.units.Quantity`
peak temperature of the black body emission of the Torus
R_dt : :class:`~astropy.units.Quantity`
radius of the Torus, if not specified the saturation radius of Eq. 96 in
[Finke2016]_ will be used
"""
def __init__(self, L_disk, xi_dt, T_dt, R_dt=None):
self.name = "RingDustTorus"
self.L_disk = L_disk
self.xi_dt = xi_dt
self.T_dt = T_dt
# dimensionless temperature of the torus
self.Theta = (k_B * self.T_dt / mec2).to_value("")
self.epsilon_dt = 2.7 * self.Theta
# if the radius is not specified use saturation radius Eq. 96 of [Finke2016]_
if R_dt is None:
self.R_dt = (
3.5
* 1e18
* np.sqrt((self.L_disk / (1e45 * u.Unit("erg s-1"))).to_value(""))
* np.power((self.T_dt / (1e3 * u.K)).to_value(""), -2.6)
) * u.cm
else:
self.R_dt = R_dt
def __str__(self):
return (
f"* Ring Dust Torus:\n"
+ f" - L_disk (accretion disk luminosity): {self.L_disk.cgs:.2e}\n"
+ f" - xi_dt (fraction of the disk radiation reprocessed by the torus): {self.xi_dt:.2e}\n"
+ f" - T_dt (temperature of the dust torus): {self.T_dt:.2e}\n"
+ f" - R_dt (radius of the torus): {self.R_dt.cgs:.2e}\n"
)
@staticmethod
def evaluate_bb_sed(nu, z, T_dt, R_dt, d_L):
"""evaluate the black body SED corresponding to the torus temperature"""
nu *= 1 + z
# geometrical factor for a source of size R_dt at distance d_L
prefactor = np.pi * np.power((R_dt / d_L).to_value(""), 2) * u.sr
I_nu = BlackBody().evaluate(nu, T_dt, scale=1)
return (prefactor * nu * I_nu).to("erg cm-2 s-1")
@staticmethod
def evaluate_bb_norm_sed(nu, z, L_dt, T_dt, R_dt, d_L):
"""evaluate the torus black-body SED such that its integral luminosity
is equal to the torus luminosity (`xi_dt * L_disk`)"""
sed_dt = RingDustTorus.evaluate_bb_sed(nu, z, T_dt, R_dt, d_L)
# renormalise
L = (np.trapz(sed_dt / nu, nu) * 4 * np.pi * d_L ** 2).to("erg s-1")
norm = (L_dt / L).to_value("")
return norm * sed_dt
def sed_flux(self, nu, z):
"""evaluate the black-body SED for the Dust Torus"""
d_L = Distance(z=z).to("cm")
L_dt = self.xi_dt * self.L_disk
return RingDustTorus.evaluate_bb_norm_sed(
nu, z, L_dt, self.T_dt, self.R_dt, d_L
)
def u(self, r, blob=None):
r"""Density of radiation produced by the Torus at the distance r along the
jet axis. Integral over the solid angle of Eq. 85 in [Finke2016]_
Parameters
----------
r : :class:`~astropy.units.Quantity`
array of distances along the jet axis
blob : :class:`~agnpy.emission_regions.Blob`
if provided, the energy density is computed in a reference frame
comvoing with the blob
"""
x2 = np.power(self.R_dt, 2) + np.power(r, 2)
x = np.sqrt(x2)
integral = self.xi_dt * self.L_disk / (4 * np.pi * c * x2)
if blob:
mu = (r / x).to_value("")
integral *= np.power(blob.Gamma * (1 - blob.Beta * mu), 2)
return integral.to("erg cm-3")