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No it is not (yet) included in the package. This is because there were no classes for subgroups of free groups when I wrote the package 10 years ago. It should be easy to get the subgroup corresponding to a subgraph of a MarkedGraph.
Is it possible to obtain the invariant splitting
F_n = G * H
when for a non iwip automorphism? (I would like generators ofG
andH
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