AY.11_constellation.json

{
    "label": "AY.11",
    "description": "AY.11 defining mutations - acquired along the path to the root of the lineage and remain conserved within the lineage",
    "sources": [],
    "type": "lineage",
    "tags": [
        "AY.11"
    ],
    "sites": [
        "nuc:G210T",
        "nuc:C241T",
        "nuc:C3037T",
        "orf1a:A1074V",
        "orf1a:P1640L",
        "nuc:A5584G",
        "orf1a:A3209V",
        "orf1a:V3718A",
        "orf1a:T3750I",
        "nuc:C13019T",
        "orf1b:P314L",
        "orf1b:G662S",
        "orf1b:P1000L",
        "orf1b:R1687C",
        "nuc:T19516C",
        "s:T19R",
        "s:A222V",
        "s:L452R",
        "s:T478K",
        "s:D614G",
        "s:P681R",
        "s:D950N",
        "orf3a:S26L",
        "m:I82T",
        "orf7a:V82A",
        "orf7a:T120I",
        "n:R203M",
        "n:D377Y",
        "nuc:C29509T",
        "nuc:G29742T",
        "nuc:T8782C",
        "orf8:L84S"
    ],
    "rules": {
        "min_alt": "23",
        "max_ref": "5",
        "orf1a:A1074V": "alt",
        "orf1b:R1687C": "alt",
        "nuc:C29509T": "alt"
    },
    "intermediate": [
        "n:D63G:100.0"
    ]
}