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AY.120.2.1_constellation.json
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AY.120.2.1_constellation.json
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{
"label": "AY.120.2.1",
"description": "AY.120.2.1 defining mutations - acquired along the path to the root of the lineage and remain conserved within the lineage",
"sources": [],
"type": "lineage",
"tags": [
"AY.120.2.1"
],
"sites": [
"nuc:G174T",
"nuc:G210T",
"nuc:C241T",
"nuc:C3037T",
"orf1a:A1306S",
"orf1a:P2046L",
"orf1a:S2048F",
"nuc:C7105T",
"orf1a:P2287S",
"nuc:C8986T",
"orf1a:V2930L",
"orf1a:T3255I",
"orf1a:T3646A",
"nuc:A11332G",
"nuc:C13138T",
"orf1b:P314L",
"orf1b:G662S",
"orf1b:P1000L",
"orf1b:A1918V",
"s:T19R",
"s:H66Y",
"s:L452R",
"s:T478K",
"s:D614G",
"s:P681R",
"s:D950N",
"nuc:A25003G",
"orf3a:S26L",
"m:I82T",
"nuc:T27017A",
"orf7a:V82A",
"orf7a:T120I",
"nuc:C27874T",
"n:R203M",
"n:G215C",
"n:D377Y",
"nuc:G29742T",
"nuc:T8782C",
"orf8:L84S"
],
"rules": {
"min_alt": "31",
"max_ref": "5",
"nuc:C13138T": "alt"
},
"intermediate": [
"s:T95I:98.76160990712074",
"n:D63G:99.38080495356036"
]
}