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AY.16.1_constellation.json
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AY.16.1_constellation.json
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{
"label": "AY.16.1",
"description": "AY.16.1 defining mutations - acquired along the path to the root of the lineage and remain conserved within the lineage",
"sources": [],
"type": "lineage",
"tags": [
"AY.16.1"
],
"sites": [
"nuc:G210T",
"nuc:C241T",
"orf1a:P309L",
"nuc:C1267T",
"nuc:C3037T",
"orf1a:P1640L",
"nuc:C8407T",
"orf1a:A3209V",
"orf1a:V3718A",
"nuc:T11514C",
"orf1a:N4051S",
"orf1a:V4216I",
"nuc:T12946C",
"nuc:T13019C",
"orf1b:P314L",
"nuc:C14913T",
"orf1b:G662S",
"orf1b:P1000L",
"orf1b:P1570L",
"nuc:A18468G",
"nuc:A20262G",
"s:T19R",
"nuc:T22227C",
"s:L452R",
"s:T478K",
"s:D614G",
"s:P681R",
"s:D950N",
"orf3a:S26L",
"nuc:T26076A",
"m:I82T",
"orf7a:V82A",
"orf7a:L116F",
"orf7a:T120I",
"orf8:D119N",
"nuc:A28271T",
"n:R203M",
"n:D377Y",
"nuc:G29742T",
"nuc:T8782C",
"orf8:L84S"
],
"rules": {
"min_alt": "32",
"max_ref": "5",
"orf1a:N4051S": "alt",
"orf1a:V4216I": "alt"
},
"intermediate": [
"n:D63G:99.68652037617557"
]
}