-
Notifications
You must be signed in to change notification settings - Fork 96
/
lineage_notes.txt
3089 lines (3089 loc) · 166 KB
/
lineage_notes.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
Lineage Description
A One of the two original haplotypes of the pandemic (A and B). Many sequences originating from China and many global exports; including to South East Asia Japan South Korea Australia the USA and Europe represented in this lineage
A.1 USA lineage
A.2 Mostly Spanish lineage now includes South and Central American sequences, other European countries and Kazakhstan.
A.2.2 Australian lineage
A.2.3 Scottish lineage
A.2.4 Panama lineage
A.2.5 Central American/ USA lineage
A.2.5.1 Costa Rica lineage from pango-designation issue #33
A.2.5.2 Predominantly Italy lineage
A.2.5.3 Predominantly Ecuador lineage, from pango-designation issue #168
A.3 USA lineage
A.4 USA lineage
A.5 A lineage with a lot of representation from Spanish-speaking countries. A Spanish/ South-American lineage, but now with sequences from an outbreak in Scotland. Also now includes what was previously A.10.
A.6 Thai lineage
A.7 Indian lineage
A.9 Indian lineage
A.11 Ghana/ Senegal lineage
A.12 Sierra Leone lineage
A.15 Sweden/ Denmark lineage
A.16 Japanese lineage
A.17 French lineage
A.18 Cote d'Ivoire/ Burkina Faso lineage
A.19 Cote d'Ivoire/ Burkina Faso lineage
A.21 Mali/ Burkina Faso lineage
A.22 UAE lineage
A.23 Ugandan lineage
A.23.1 International lineage with a number of variants of potential biological concern, including 681R
A.24 South Korean lineage
A.25 Ugandan lineage
A.26 UK lineage
A.27 Mayotte/ European cluster with 18 changes in the long branch leading to this cluster, including 7 NS changes in the spike (L18F, L452R, N501Y, A653V, H655Y, D796Y, G1219V), on a 614D background. pango-designation issue #11.
A.28 This lineage has 9 changes on its basal branch, including the 69-70del, N501T (not Y) and H655Y. (This variant is picked up by the qPCR S drop). pango-designation issue #12
A.29 Lineage circulating in multiple countries from pango-designation issue #78
A.30 Lineage in several countries, associated with travel from Tanzania, from pango-designation issue #138
B One of the two original haplotypes of the pandemic(and first to be discovered)
B.1 A large European lineage the origin of which roughly corresponds to the Northern Italian outbreak early in 2020.
B.1.1 European lineage with 3 clear SNPs `28881GA`,`28882GA`,`28883GC`
B.1.1.1 England
C.1 Alias of B.1.1.1.1, South Africa
C.1.1 Alias of B.1.1.1.1.1, Mozambique
C.1.2 Alias of B.1.1.1.1.2, mostly South Africa, from pango-designation issue #139
C.2 Alias of B.1.1.1.2, South Africa and some European
C.2.1 Alias of B.1.1.1.2.1, Aruba and Curacao
C.3 Alias of B.1.1.1.3, England
C.4 Alias of B.1.1.1.4, Peruvian
C.5 Alias of B.1.1.1.5, Switzerland and Luxembourg
C.6 Alias of B.1.1.1.6, South Africa
C.7 Alias of B.1.1.1.7, Denmark
C.8 Alias of B.1.1.1.8, Canada and DRC
C.9 Alias of B.1.1.1.9, South Africa
C.10 Alias of B.1.1.1.10, Poland
C.11 Alias of B.1.1.1.11
C.12 Alias of B.1.1.1.12, New Zealand
C.13 Alias of B.1.1.1.13, Peruvian
C.14 Alias of B.1.1.1.14, Peruvian
C.16 Alias of B.1.1.1.16, Portugal originally, now pan-european
C.17 Alias of B.1.1.1.17, Egypt
C.18 Alias of B.1.1.1.18, Italy
C.19 Alias of B.1.1.1.19, Denmark
C.20 Alias of B.1.1.1.20, Switzerland
C.21 Alias of B.1.1.1.21, Spain
C.22 Alias of B.1.1.1.22, Argentina
C.23 Alias of B.1.1.1.23, Mainly USA
C.25 Alias of B.1.1.1.25, Peru
C.26 Alias of B.1.1.1.26, Chile
C.27 Alias of B.1.1.1.27, England
C.28 Alias of B.1.1.1.28, USA
C.29 Alias of B.1.1.1.29, Chile
C.30 Alias of B.1.1.1.30, England
C.30.1 Alias of B.1.1.1.30.1, Denmark
C.31 Alias of B.1.1.1.31, USA
C.32 Alias of B.1.1.1.32, Peru
C.33 Alias of B.1.1.1.33, Peru
C.34 Alias of B.1.1.1.34, Canada
C.35 Alias of B.1.1.1.35, Central Europe, England
C.36 Alias of B.1.1.1.36, Egypt mainly and other countries
C.36.1 Alias of B.1.1.1.36.1, Canada
C.36.2 Alias of B.1.1.1.36.2, Switzerland
C.36.3 Alias of B.1.1.1.36.3, Europe and USA lineage, from pango-designation issue #80
C.36.3.1 Alias of B.1.1.1.36.3.1, Europe and USA lineage, from pango-designation issue #80
C.37 Alias of B.1.1.1.37, lineage in Peru, Chile, USA and Germany, from pango-designation issue #52
C.37.1 Alias of B.1.1.1.37.1, lineage outside of South America, from pango-designation issue #158
C.38 Alias of B.1.1.1.38, lineage in multiple countries, from pango-designation issue #150, formally B.1.1.527
C.39 Alias of B.1.1.1.39, Chile and Peru lineage
C.40 Alias of B.1.1.1.40, Peru lineage, from pango-designation issue #203
B.1.1.3 England Lineage
B.1.1.4 English lineage
B.1.1.5 European lineage
B.1.1.7 UK lineage of concern, associated with the N501Y mutation. More information can be found at cov-lineages.org/global_report.html
Q.1 Alias of B.1.1.7.1, predominantly Lithuania lineage, from pango-designation issue #39
Q.2 Alias of B.1.1.7.2, Italy lineage, from pango-designation issue #79
Q.3 Alias of B.1.1.7.3, USA lineage, from pango-designation issue #92
Q.4 Alias of B.1.1.7.4, lineage in multiple countries with spike H681R, from pango-designation issue #176
Q.5 Alias of B.1.1.7.5, Israel lineage, from pango-designation issue #165
Q.6 Alias of B.1.1.7.6, France lineage, from pango-designation issue #183
Q.7 Alias of B.1.1.7.7, predominantly France lineage, from pango-designation issue #183
Q.8 Alias of B.1.1.7.8, Sri Lanka lineage, from pango-designation issue #197
B.1.1.8 England
B.1.1.10 European lineage
L.1 Alias of B.1.1.10.1, Canadian lineage
L.2 Alias of B.1.1.10.2, Netherlands lineage
L.3 Alias of B.1.1.10.3, Nigerian/ European lineage with long branch from B.1.1.10
L.4 USA lineage, alias of B.1.1.10.4
B.1.1.12 England
B.1.1.13 UK
B.1.1.14 Scotland
B.1.1.15 UK/ Luxembourg lineage
B.1.1.16 Wales with European base
B.1.1.17 Icelandic
B.1.1.25 Bangladesh Lineage
D.2 Alias of B.1.1.25.2, Australia
D.3 Alias of B.1.1.25.3, Australia
D.4 Alias of B.1.1.25.4, Irish/ Northern Irish lineage
D.5 Alias of B.1.1.25.5, Swedish/ Denmark lineage
B.1.1.26 USA Lineage
B.1.1.27 Oman Lineage, some UAE
B.1.1.28 Brazil mostly, absorbed B.1.1.94 and B.1.1.143
P.1 Alias of B.1.1.28.1, Brazilian lineage with a number of spike mutations with likely functional significance E484K, K417T, and N501Y. Described in https://virological.org/t/genomic-characterisation-of-an-emergent-sars-cov-2-lineage-in-manaus-preliminary-findings/586.
P.1.1 Alias of B.1.1.28.1.1, European lineage in Italy and Germany
P.1.2 Alias of B.1.1.28.1.2, Netherlands/Brazil lineage. Imported into Netherlands, likely with local transmission here and continued circulation within and/or reintroduction into Brazil, pango-designation issue #56
P.1.3 Alias of B.1.1.28.1.3, Brazil lineage, from pango-designation issue #141
P.1.4 Alias of B.1.1.28.1.4, Brazil lineage, from pango-designation issue #141
P.1.5 Alias of B.1.1.28.1.5, Brazil lineage, from pango-designation issue #141
P.1.6 Alias of B.1.1.28.1.6, Brazil lineage, from pango-designation issue #141
P.1.7 Alias of B.1.1.28.1.7, Brazil lineage, from pango-designation issue #141
P.1.7.1 Alias of B.1.1.28.1.7.1, Peru lineage, from pango-designation issue #326
P.1.8 Alias of B.1.1.28.1.8, Brazil lineage, from pango-designation issue #164
P.1.9 Alias of B.1.1.28.1.9, Brazil lineage, from pango-designation issue #174
P.1.10 Alias of B.1.1.28.1.10, predominantly USA lineage, from pango-designation issue #179
P.1.10.1 Alias of B.1.1.28.1.10.1, Aruba lineage, from pango-designation issue #179
P.1.10.2 Alias of B.1.1.28.1.10.2, Mexico lineage, from pango-designation issue #179
P.1.11 Alias of B.1.1.28.1.11, Brazil lineage, from pango-designation issue #164
P.1.12 Alias of B.1.1.28.1.12, predominantly Peru lineage, from pango-designation issue #212
P.1.12.1 Sublineage of P.1.12 reported predominantly from Peru and US (from pango-designation issue #282)
P.1.13 Alias of B.1.1.28.1.13, USA lineage, from pango-designation issue #231
P.1.14 Alias of B.1.1.28.1.14, predominantly Canada lineage, from pango-designation issue #231
P.1.15 Alias of B.1.1.28.1.15, predominantly Chile lineage, from pango-designation issue #231
P.1.16 Alias of B.1.1.28.1.16, predominantly Belgium lineage also in other countries in Europe, from pango-designation issue #231
P.1.17 Alias of B.1.1.28.1.17, predominantly USA and Mexico lineage, from pango-designation issue #231
P.1.17.1 Alias of B.1.1.28.1.17.1, predominantly in Luxembourg, from pango-designation issue #231
P.2 Alias of B.1.1.28.2, Brazilian lineage
P.3 Alias of B.1.1.28.3, Lineage predominantly in the Philippines with spike mutations E484K, N501Y, P681H, 141-143del. Described in Tablizo et al 2021: https://www.medrxiv.org/content/10.1101/2021.03.03.21252812v2
P.4 Alias of B.1.1.28.4, Brazil lineage, pango-designation issue #68
P.5 Alias of B.1.1.28.5, Brazil lineage, pango-designation issue #86
P.6 Alias of B.1.1.28.6, Uruguay lineage, from pango-designation issue #148
P.7 Alias of B.1.1.28.7, Brazil lineage, from pango-designation issue #29
B.1.1.29 Wales lineage, formerly temporarily assigned B.1.1.439 due to an error (see designation issue 50)
B.1.1.30 Lithuanian
B.1.1.31 Russian lineage
B.1.1.33 Brazilian
N.1 Alias of B.1.1.33.1, US
N.2 Alias of B.1.1.33.2, European lineage
N.3 Alias of B.1.1.33.3, Argentinian
N.4 Alias of B.1.1.33.4, Chilean
N.5 Alias of B.1.1.33.5, Argentinian
N.6 Alias of B.1.1.33.6, Chilean
N.7 Alias of B.1.1.33.7, Uruguay
N.8 Alias of B.1.1.33.8, Kenyan
N.9 Alias of B.1.1.33.9, Brazilian lineage
N.10 Alias of B.1.1.33.10, Brazilian lineage described in https://virological.org/t/identification-of-a-new-b-1-1-33-sars-cov-2-variant-of-interest-voi-circulating-in-brazil-with-mutation-e484k-and-multiple-deletions-in-the-amino-n-terminal-domain-of-the-spike-protein/675
B.1.1.34 South African lineage
B.1.1.37 UK lineage
B.1.1.38 Wales
B.1.1.39 Mostly Switzerland with lots of other countries
AQ.1 Alias of B.1.1.39.1, Finland lineage
AQ.2 Alias of B.1.1.39.2, Denmark lineage
B.1.1.40 South African lineage
B.1.1.41 England lineage
B.1.1.43 Scottish lineage
B.1.1.44 Pan-European, big scottish section
B.1.1.45 UK
B.1.1.46 Mostly India
B.1.1.47 Switzerland and other Northern Europe
B.1.1.48 Japan
B.1.1.49 Wales
B.1.1.50 Israel and Palestine
B.1.1.51 UK
B.1.1.52 South Africa
B.1.1.53 South Africa
B.1.1.54 South African Lineage
B.1.1.55 English lineage
B.1.1.56 South African lineage
B.1.1.57 South African lineage, a few English sequences, one Zimbabwe
B.1.1.58 European lineage
B.1.1.59 UK lineage
B.1.1.61 USA lineage
B.1.1.62 South African lineage
B.1.1.63 Hong Kong lineage
B.1.1.67 England and South Africa
B.1.1.70 European Lineage
AP.1 Alias of B.1.1.70.1, Wales lineage
B.1.1.71 Dutch, Central Europe
B.1.1.72 US lineage
B.1.1.74 NI & Ireland Lineage
B.1.1.75 Belgian lineage
B.1.1.77 US Lineage
B.1.1.82 Wales lineage
B.1.1.83 Northern Irish lineage
B.1.1.84 South African
B.1.1.86 UK lineage
B.1.1.87 Hungarian lineage
B.1.1.88 Portugal lineage
B.1.1.89 England
B.1.1.90 Sweden and Denmark lineage
B.1.1.91 Sweden
B.1.1.92 English lineage
B.1.1.93 US Lineage
B.1.1.95 English lineage
B.1.1.97 England
B.1.1.98 US lineage
B.1.1.99 Mostly South Africa
B.1.1.100 Denmark lineage
B.1.1.101 Indian lineage
B.1.1.107 England
B.1.1.109 UK lineage
B.1.1.110 Peru lineage
B.1.1.111 African lineage (Zambia, Zimbabwe)
B.1.1.112 Netherlands
B.1.1.113 Western USA
B.1.1.114 Wales
B.1.1.115 UK lineage, now contains former B.1.1.235
B.1.1.116 USA lineage
B.1.1.117 South African some Argentina, now contains B.1.1.252
B.1.1.118 US Lineage (TX)
B.1.1.119 Northern Ireland lineage
B.1.1.120 UK lineage
B.1.1.121 Canadian lineage
B.1.1.122 Netherlands
B.1.1.123 UK lineage
B.1.1.125 UK lineage
B.1.1.127 Russian lineage
B.1.1.128 US lineage
B.1.1.129 Russian lineage
B.1.1.130 England
B.1.1.132 US Lineage
B.1.1.133 UAE/ European lineage
B.1.1.134 UK
B.1.1.135 US
B.1.1.136 Australian lineage
B.1.1.137 UK lineage
B.1.1.138 UK lineage
B.1.1.139 USA
B.1.1.141 Russian, Latvian, Netherlands
B.1.1.142 Australian lineage
B.1.1.144 Swiss lineage
B.1.1.145 UK lineage
B.1.1.147 England
B.1.1.148 US lineage
B.1.1.149 English Lineage
B.1.1.152 Russian
B.1.1.153 Northern European Lineage
B.1.1.154 UK lineage
B.1.1.155 English
B.1.1.157 Canadian lineage
B.1.1.158 USA lineage
B.1.1.159 European lineage
B.1.1.160 Northern Ireland lineage
B.1.1.161 Saudi lineage
B.1.1.162 England, Russia, Latvia
B.1.1.163 Russian lineage
B.1.1.164 UK
B.1.1.165 England
B.1.1.166 UK lineage
B.1.1.168 UK lineage
B.1.1.169 USA lineage
B.1.1.170 UK/Denmark lineage
B.1.1.171 UK lineage
B.1.1.172 USA
B.1.1.174 USA lineage
B.1.1.175 Bangladesh
B.1.1.176 Canadian lineage
B.1.1.177 Texas
B.1.1.178 England
B.1.1.180 USA lineage
B.1.1.181 Used to be just Turkey, now lots of Canadian
B.1.1.182 USA
B.1.1.184 Russia, some B.1.1.129
B.1.1.185 Netherlands lineage
B.1.1.186 Southern USA
B.1.1.187 UK and italy
B.1.1.189 European lineage
B.1.1.190 Wales lineage
B.1.1.191 Denmark
B.1.1.192 USA
B.1.1.193 England
B.1.1.194 England
B.1.1.196 UK lineage
B.1.1.197 UK lineage
B.1.1.198 UK/ Luxembourg lineage
B.1.1.200 UK
AN.1 Alias of B.1.1.200.1, Sweden and Netherlands, from B.1.1.130
B.1.1.201 India and Singapore and Texas
B.1.1.202 Italy
B.1.1.203 England and Ecuador
B.1.1.204 UK lineage
B.1.1.205 USA lineage
B.1.1.207 USA
B.1.1.208 UK
B.1.1.209 Netherlands
B.1.1.210 USA (TX)
B.1.1.213 England
B.1.1.214 Japan
B.1.1.216 Predominantly Indian lineage with exports elsewhere
AM.1 Alias of B.1.1.216.1, Portugal lineage
AM.2 Alias of B.1.1.216.2, Canadian lineage
AM.3 Alias of B.1.1.216.3, UK lineage
AM.4 Alias of B.1.1.216.4, Canadian lineage
B.1.1.217 UK lineage
S.1 Alias of B.1.1.217.1, Latvian lineage, previously I.1
B.1.1.218 European lineage
B.1.1.219 Northern Europe (UK, Denmark, Norway, Sweden)
B.1.1.220 UK lineage
B.1.1.221 Belgian lineage
B.1.1.222 USA/Mexico
B.1.1.224 Denmark (some German)
B.1.1.225 USA
B.1.1.226 USA lineage
B.1.1.227 England
B.1.1.228 USA (WA)
B.1.1.229 Italy
B.1.1.230 USA
B.1.1.231 USA lineage
AL.1 Alias of B.1.1.231.1, Canada lineage
B.1.1.232 Northern Europe (UK, Germany, Denmark, Belgium, NL)
AK.1 Alias of B.1.1.232.1, UK lineage
AK.2 Alias of B.1.1.232.2, German lineage
B.1.1.234 England, Ireland, Northern Ireland, Northern Europe
B.1.1.236 UK
B.1.1.237 Wales
B.1.1.239 USA lineage
B.1.1.241 European lineage
AH.1 Alias of B.1.1.241.1, Swiss Lineage
AH.2 Alias of B.1.1.241.2, French Lineage
AH.3 Alias of B.1.1.241.3, Finnish Lineage
B.1.1.240 UK lineage
AJ.1 Alias of B.1.1.240.1, Portugal lineage
B.1.1.242 Gambia and Switzerland
B.1.1.243 Eastern Europe, Central Europe, UK
B.1.1.244 USA lineage
B.1.1.249 Welsh Lineage
B.1.1.251 UK and US
B.1.1.253 UK
B.1.1.254 Mostly South Africa
B.1.1.255 UK lineage
B.1.1.256 UK lineage
B.1.1.258 USA (TX)
B.1.1.261 Swedish/ Danish/ Faroe Islands lineage
B.1.1.257 Mostly UK lineage with other northern european plus one singapore
B.1.1.262 UK lineage
B.1.1.263 UAE lineage (~95%)
B.1.1.265 USA lineage
B.1.1.266 Czech lineage
B.1.1.267 Irish lineage
B.1.1.268 USA lineage
B.1.1.269 European lineage
B.1.1.270 UK lineage
B.1.1.271 German and Austrian lineage
B.1.1.272 Denmark
B.1.1.273 South african lineage, previously part of B.1.1.56
B.1.1.274 England, Thailand, Russia, USA
B.1.1.275 DRC with some UAE and England
B.1.1.277 European lineage
K.1 Alias of B.1.1.277.1, South Korean lineage
K.2 Alias of B.1.1.277.2, Russian lineage
K.3 Alias of B.1.1.277.3, Norway lineage
B.1.1.279 English Lineage
B.1.1.280 Lithuanian lineage
B.1.1.282 Netherlands lineage
B.1.1.283 Japan
B.1.1.284 Japan
B.1.1.285 Japan/ USA lineage
B.1.1.286 UK
B.1.1.288 Danish Lineage
B.1.1.289 UK lineage
B.1.1.290 USA lineage
B.1.1.291 USA Lineage
B.1.1.294 Russian and UK lineage
M.1 Alias of B.1.1.294.1, Israel
M.2 Alias of B.1.1.294.2, Swiss Lineage
M.3 Alias of B.1.1.294.3, English Lineage
B.1.1.296 UK lineage
B.1.1.297 Central Europe lineage
AG.1 Alias of B.1.1.297.1, Netherlands lineage
B.1.1.298 Denmark Lineage
B.1.1.299 UK lineage
B.1.1.300 UK lineage
B.1.1.301 UK lineage
B.1.1.302 Swedish lineage
B.1.1.303 UK
B.1.1.304 UK/USA lineage
B.1.1.305 Pan European
AF.1 Alias of B.1.1.305.1, Switzerland
B.1.1.306 Big indian lineage, exports to Zambia, Bahrain and Canada
AE.1 Alias of B.1.1.306.1, Zambian
AE.2 Alias of B.1.1.306.2, Bahrain
AE.3 Alias of B.1.1.306.3, Zambia and Rwanda
AE.4 Alias of B.1.1.306.4, Bahrain
AE.5 Alias of B.1.1.306.5, Zambia
AE.6 Alias of B.1.1.306.6, Bahrain
AE.7 Alias of B.1.1.306.7, Bahrain
AE.8 Alias of B.1.1.306.8, Canada lineage
B.1.1.307 UK lineage
B.1.1.308 UK
B.1.1.309 Now all England, was US, so probably split from something
B.1.1.310 Northern Irish with English root
B.1.1.311 Huge UK lineage
B.1.1.312 Jordan lineage
B.1.1.315 Previously D.1, UK/ UAE lineage
AD.1 Alias of B.1.1.315.1, Denmark lineage
AD.2 Alias of B.1.1.315.2, UK lineage
AD.2.1 Alias of B.1.1.315.2.1, Lithuanian lineage
B.1.1.316 International lineage with spike mutation Q677H, parent of lineage R.1 and R.2 which have additional mutations including E484K mutation
R.1 Alias of B.1.1.316.1, Sublineage of B.1.1.316 with 3 additional spike mutations, circulating in a number of countries. pango-designation issue #17
R.2 Alias of B.1.1.316.2, Sublineage of B.1.1.316 with E484K. pango-designation issue #18
B.1.1.317 Russian lineage
AS.1 Alias of B.1.1.317.1, UK lineage
AS.2 Alias of B.1.1.317.2, UK lineage
B.1.1.318 Lineage circulating in multiple countries with a number of variants of concern (Spike D614G, Spike D796H, Spike E484K, Spike P681H, Spike T95I, Spike Y144del). pango-designation issue #15
AZ.1 Alias of B.1.1.318.1, Canada lineage, from pango-designation issue #171
AZ.2 Alias of B.1.1.318.2, predominantly Greece lineage, from pango-designation issue #171
AZ.2.1 Alias of B.1.1.318.2.1, Switzerland lineage, from pango-designation issue #171
AZ.3 Alias of B.1.1.318.3, USA lineage, from pango-designation issue #171
AZ.4 Alias of B.1.1.318.4, Ireland lineage, from pango-designation issue #171
AZ.5 Alias of B.1.1.318.5, Mauritius lineage, from pango-designation issue #171
AZ.6 Alias of B.1.1.318.6, Canada lineage, from pango-designation issue #171
B.1.1.319 Russian/Serbian Lineage
B.1.1.320 USA lineage
B.1.1.322 Mexico/Southwest USA
B.1.1.323 Northern Europe, split from B.1.1.257
B.1.1.324 Chilean Lineage
B.1.1.325 Eastern Europe plus Belgium and Denmark
B.1.1.326 Indian Lineage
B.1.1.327 Swiss Lineage
B.1.1.328 Costa Rica and Florida
B.1.1.329 Pan-US
B.1.1.330 Chinese Lineage
B.1.1.331 Austrian lineage
B.1.1.332 Brazilian Lineage
B.1.1.333 Norwegian Lineage
B.1.1.334 USA and Mexico
B.1.1.335 USA and Canada
B.1.1.336 Russian lineage
B.1.1.337 US
B.1.1.338 German lineage
B.1.1.339 UAE and England
B.1.1.340 Indian Lineage
B.1.1.341 UK lineage
B.1.1.342 USA
B.1.1.343 Canadian lineage
B.1.1.344 Mexico, Texas
B.1.1.345 USA lineage
B.1.1.346 Denmark lineage
B.1.1.347 Central Europe
B.1.1.348 South America & USA
B.1.1.349 Russia, one "Congo"
B.1.1.350 Latvian lineage
B.1.1.351 USA, England, Finland, Denmark
B.1.1.352 USA lineage
B.1.1.353 UAE, Israel, Australia
B.1.1.354 Singapore, malaysia, India, UAE, England
B.1.1.355 England, Northern Europe
B.1.1.356 Texas
B.1.1.357 USA lineage
B.1.1.358 USA
B.1.1.359 Ghana and Denmark
B.1.1.360 Wales
B.1.1.361 England
B.1.1.362 USA
B.1.1.363 Wales
B.1.1.364 Russia, S Korea, England
B.1.1.365 England
B.1.1.366 UAE
B.1.1.367 USA
B.1.1.368 USA and Canada
B.1.1.369 England
B.1.1.370 England, USA, Russia, Germany
AT.1 Alias of B.1.1.370.1, Russia and Finland lineage from pango-designation issue #47
B.1.1.371 Saudi Arabia to Romania to Western Europe, contains B.1.1.161 at the base
B.1.1.372 England
B.1.1.373 Russia, split from B.1.1.31
B.1.1.374 Balkans, Finland
B.1.1.375 Mozambique, was C.1.1
B.1.1.376 USA (California)
B.1.1.377 Denmark
B.1.1.378 UK and Brazil
B.1.1.379 Wales
B.1.1.380 USA
B.1.1.381 Peruvian
B.1.1.382 South African lineage
B.1.1.383 South African
B.1.1.384 Swiss Lineage
B.1.1.385 German Lineage
B.1.1.386 South African lineage
B.1.1.387 South African lineage
B.1.1.388 Columbian lineage
B.1.1.389 Costa Rica lineage
B.1.1.391 UAE lineage
B.1.1.392 USA lineage
B.1.1.393 Brazilian lineage
B.1.1.394 Portugal lineage
B.1.1.395 UK lineage, previously part of B.1.1.279
B.1.1.396 Russian lineage, some previously B.1.1.184
B.1.1.397 Predominantly Russia, includes some previous B.1.1.67 and H.1 sequences
B.1.1.398 USA/ Indonesian lineage
B.1.1.399 Irish lineage
B.1.1.400 Spain lineage
B.1.1.401 Portugal lineage
B.1.1.402 USA (Texas), split from B.1.1.177
B.1.1.403 USA
B.1.1.404 Ghana, Burkina Faso, Luxembourg, Germany
B.1.1.405 Germany lineage
AC.1 Alias of B.1.1.405.1, UK lineage
B.1.1.406 Spain, UK, Italy
B.1.1.407 Mostly Russia
B.1.1.408 UK lineage
B.1.1.409 UAE, Israel, Saudi Arabia
B.1.1.410 Portugal lineage
B.1.1.411 Ecuador and US
B.1.1.412 South African lineage
B.1.1.413 Europe, Turkey, Iran
B.1.1.414 Indian lineage
B.1.1.415 Austrian lineage
B.1.1.416 USA lineage
B.1.1.417 Canada lineage
B.1.1.418 USA lineage
B.1.1.419 UK lineage, includes some formally B.1.1.193 sequences
B.1.1.420 Western Europe, USA
B.1.1.421 Portuguese lineage
B.1.1.422 Lithuanian lineage
B.1.1.423 USA lineage
B.1.1.424 Russia lineage, contains some formally B.1.1.167 sequences
B.1.1.425 England and Denmark
B.1.1.426 USA lineage
B.1.1.427 Russian Lineage
B.1.1.428 Switzerland and North Macedonia
B.1.1.429 Latvia and Finland
B.1.1.430 North Macedonia
B.1.1.431 Australia and Canada
B.1.1.432 US and Mexico
B.1.1.433 Denmark and Switzerland, some B.1.1.281
B.1.1.434 Mostly US lineage with some UK and Canada (was B.1.1.304)
B.1.1.435 Russian
B.1.1.436 Belgium lineage
B.1.1.437 USA lineage
B.1.1.438 Swedish lineage
B.1.1.440 US and Mexico
B.1.1.441 USA lineage
B.1.1.442 Argentinian
B.1.1.444 South African (was B.1.1.117)
B.1.1.445 Switzerland lineage
B.1.1.446 Sweden lineage
B.1.1.447 USA lineage
B.1.1.448 South African (was B.1.1.54)
B.1.1.449 Russia lineage
B.1.1.450 USA lineage
B.1.1.451 Norway lineage
B.1.1.452 Russia lineage
B.1.1.453 US
B.1.1.456 South African
B.1.1.458 Swedish lineage
B.1.1.459 South African lineage (some were part of Belgian lineage B.1.1.75
B.1.1.461 US TX lineage
B.1.1.462 United Arab Emirates
B.1.1.463 US CA lineage
B.1.1.464 US lineage
AW.1 Alias of B.1.1.464.1, Canadian lineage
B.1.1.465 Japanese lineage
B.1.1.466 Gambian lineage
B.1.1.467 US lineage (NY)
B.1.1.480 US Lineage
B.1.1.481 Russian Lineage
B.1.1.482 US Lineage
AV.1 Alias of B.1.1.482.1, UK and France lineage with several VOC/VUI-like mutations, from pango-designation issue #73
B.1.1.483 Belgian lineage
B.1.1.484 Nigerian Lineage
B.1.1.485 Ghanaian Lineage
B.1.1.486 US Lineage
B.1.1.487 UK and Nigerian Lineage
B.1.1.500 UAE lineage
B.1.1.506 Mainly Russian
B.1.1.507 South African Lineage (was B.1.1.254)
B.1.1.512 US/Mexico
B.1.1.513 US lineage (NY)
B.1.1.514 US lineage
B.1.1.515 German lineage
B.1.1.516 Costa Rica lineage
B.1.1.517 USA lineage
B.1.1.518 USA/ Mexico lineage
B.1.1.519 USA/ Mexico lineage
B.1.1.521 European lineage
B.1.1.522 Belgium lineage
B.1.1.523 Lineage in multiple countries, predominantly Russia, from pango-designation issue #69
B.1.1.524 Predominantly Russia lineage, from pango-designation issue #85
B.1.1.525 Predominantly Russia lineage, from pango-designation issue #85
B.1.1.526 India lineage, from pango-designation issue #91, previously designated B.1.624
B.1.1.528 South Africa lineage, from pango-designation issue #177
B.1.1.529 South Africa and Botswana lineage, from pango-designation issue #343
BA.1 Alias of B.1.1.529.1, from pango-designation issue #361
BA.1.1 Alias of B.1.1.529.1.1, from pango-designation issue #360
BA.1.1.1 Alias of B.1.1.529.1.1.1, European lineage
BC.1 Alias of B.1.1.529.1.1.1.1, Japan lineage
BC.2 Alias of B.1.1.529.1.1.1.2, Peru lineage, from pango-designation issue #570
BA.1.1.2 Alias of B.1.1.529.1.1.2, Japan lineage
BA.1.1.3 Alias of B.1.1.529.1.1.3, Switzerland lineage
BA.1.1.4 Alias of B.1.1.529.1.1.4, UK lineage
BA.1.1.5 Alias of B.1.1.529.1.1.5, South Korea lineage
BA.1.1.6 Alias of B.1.1.529.1.1.6, Canada lineage
BA.1.1.7 Alias of B.1.1.529.1.1.7, lineage in India and other countries
BA.1.1.8 Alias of B.1.1.529.1.1.8, USA lineage
BA.1.1.9 Alias of B.1.1.529.1.1.9, New Zealand lineage
BA.1.1.10 Alias of B.1.1.529.1.1.10, Canada lineage
BA.1.1.11 Alias of B.1.1.529.1.1.11, European lineage
BA.1.1.12 Alias of B.1.1.529.1.1.12, UK lineage
BA.1.1.13 Alias of B.1.1.529.1.1.13, UK lineage
BA.1.1.14 Alias of B.1.1.529.1.1.14, European lineage
BA.1.1.15 Alias of B.1.1.529.1.1.15, Europe and Australia lineage
BA.1.1.16 Alias of B.1.1.529.1.1.16, Canada and USA lineage
BA.1.1.17 Alias of B.1.1.529.1.1.17, USA lineage, from pango-designation issue #452
BA.1.1.18 Alias of B.1.1.529.1.1.18, USA lineage
BA.1.2 Alias of B.1.1.529.1.2, Mayotte and Reunion lineage
BA.1.3 Alias of B.1.1.529.1.3, Canada lineage
BA.1.4 Alias of B.1.1.529.1.4, France lineage
BA.1.5 Alias of B.1.1.529.1.5, UK lineage
BA.1.6 Alias of B.1.1.529.1.6, Canada and Sint Maarten lineage
BA.1.7 Alias of B.1.1.529.1.7, UK lineage
BA.1.8 Alias of B.1.1.529.1.8, European lineage
BA.1.9 Alias of B.1.1.529.1.9, Brazil lineage
BA.1.10 Alias of B.1.1.529.1.10, UK lineage
BA.1.12 Alias of B.1.1.529.1.12, UK lineage
BA.1.13 Alias of B.1.1.529.1.13, European lineage
BA.1.13.1 Alias of B.1.1.529.1.13.1, Indonesia lineage
BA.1.14 Alias of B.1.1.529.1.14, lineage in Brazil and other countries
BA.1.14.1 Alias of B.1.1.529.1.14.1, Brazil lineage, from pango-designation issue #506
BA.1.14.2 Alias of B.1.1.529.1.14.2, Brazil lineage
BA.1.15 Alias of B.1.1.529.1.15, lineage in USA and other countries
BA.1.15.1 Alias of B.1.1.529.1.15.1, UK lineage
BA.1.15.2 Alias of B.1.1.529.1.15.2, USA lineage, from pango-designation issue #508
BA.1.15.3 Alias of B.1.1.529.1.15.3, Peru lineage, from pango-designation issue #573
BA.1.16 Alias of B.1.1.529.1.16, UK lineage
BA.1.16.1 Alias of B.1.1.529.1.16.1, Thailand, Cambodia and Indonesia lineage
BA.1.16.2 Alias of B.1.1.529.1.16.2, Greece lineage
BA.1.17 Alias of B.1.1.529.1.17, European lineage
BA.1.17.1 Alias of B.1.1.529.1.17.1, Australia lineage
BA.1.17.2 Alias of B.1.1.529.1.17.2, lineage from pango-designation issue #462
BD.1 Alias of B.1.1.529.1.17.2.1, UK lineage, from pango-designation issue #461
BA.1.18 Alias of B.1.1.529.1.18, Europe and North America lineage, from pango-designation issue #474
BA.1.19 Alias of B.1.1.529.1.19, Europe lineage
BA.1.20 Alias of B.1.1.529.1.20, USA lineage, from pango-designation issue #375
BA.1.21 Alias of B.1.1.529.1.21, lineage from pango-designation issue #505
BA.1.21.1 Alias of B.1.1.529.1.21.1, Italy lineage, from pango-designation issue #409
BA.1.22 Alias of B.1.1.529.1.22, Peru lineage from pango-designation issue #529
BA.1.23 Alias of B.1.1.529.1.23, mainly found in USA, from pango-designation issue #663
BA.1.24 Alias of B.1.1.529.1.24, found in Spain, from pango-designation issue #666
BA.2 Alias of B.1.1.529.2, from pango-designation issue #361
BA.2.1 Alias of B.1.1.529.2.1, UK lineage
BA.2.2 Alias of B.1.1.529.2.2, Hong Kong lineage
BA.2.2.1 Alias of B.1.1.529.2.2.1, China lineage, from pango-designation issue #675
BA.2.3 Alias of B.1.1.529.2.3, lineage in Philippines and other countries
BA.2.3.1 Alias of B.1.1.529.2.3.1, Japan lineage, from pango-designation issue #495
BA.2.3.2 Alias of B.1.1.529.2.3.2, Vietnam and Japan lineage
BS.1 Alias of B.1.1.529.2.3.2.1, Vietnam lineage, from pango-designation issue #1052
BS.1.1 Alias of B.1.1.529.2.3.2.1.1, Vietnam lineage, defined by S:K356T, from pango-designation issue #1097
BS.1.2 Alias of B.1.1.529.2.3.2.1.2, Vietnam lineage, defined by S:T430I
BA.2.3.4 Alias of B.1.1.529.2.3.4, Canada lineage
BA.2.3.5 Alias of B.1.1.529.2.3.5, mainly found in USA, England and Spain, from pango-designation issue #627
BA.2.3.6 Alias of B.1.1.529.2.3.6, mainly found in Canada and USA, from pango-designation issue #633
BA.2.3.7 Alias of B.1.1.529.2.3.7, mainly found in Japan, Hong Kong and Taiwan, from pango-designation issue #643
BA.2.3.8 Alias of B.1.1.529.2.3.8, South Korea lineage
BA.2.3.9 Alias of B.1.1.529.2.3.9, lineage in Netherlands and other countries
BA.2.3.10 Alias of B.1.1.529.2.3.10, Canada and USA lineage
BA.2.3.11 Alias of B.1.1.529.2.3.11, Japan lineage
BA.2.3.12 Alias of B.1.1.529.2.3.12, South Korea lineage
BA.2.3.13 Alias of B.1.1.529.2.3.13, Japan lineage
BA.2.3.14 Alias of B.1.1.529.2.3.14, South Korea lineage
BA.2.3.15 Alias of B.1.1.529.2.3.15, Italy and Spain lineage
BA.2.3.16 Alias of B.1.1.529.2.3.16, Papua New Guinea lineage, from pango-designation issue #524
BP.1 Alias of B.1.1.529.2.3.16.1, Oceania/South East Asia lineage, from pango-designation issue #1009
BA.2.3.17 Alias of B.1.1.529.2.3.17, Northern Mariana Islands and USA lineage, from pango-designation issue #677
BA.2.3.18 Alias of B.1.1.529.2.3.18, Japan lineage, from pango-designation issue #687
BA.2.3.19 Alias of B.1.1.529.2.3.19, found Brunei, from pango-designation issue #824
BA.2.3.20 Alias of B.1.1.529.2.3.20, found globally, unclear origin, from pango-designation issue #1013
CM.1 Alias of B.1.1.529.2.3.20.1, S:N17S, from pango-designation issue #1129
CM.2 Alias of B.1.1.529.2.3.20.2, international, ORF1a:S2103F
CM.2.1 Alias of B.1.1.529.2.3.20.2.1, Indonesia/Australia, S:F486S, issue #1356
CM.3 Alias of B.1.1.529.2.3.20.3, USA/South Korea/Australia, S:G485D
CM.4 Alias of B.1.1.529.2.3.20.4, USA/Singapore/SouthKorea, ORF1b:D146G
CM.4.1 Alias of B.1.1.529.2.3.20.4.1, S:K478R, Philippines/Japan/USA
CM.5 Alias of B.1.1.529.2.3.20.5, global, 10802T
CM.5.1 Alias of B.1.1.529.2.3.20.5.1, S:Q675R
CM.5.2 Alias of B.1.1.529.2.3.20.5.2, S:G485D, USA/Australia, from issue #1386
CM.6 Alias of B.1.1.529.2.3.20.6, global, ORF1a:G30A
CM.6.1 Alias of B.1.1.529.2.3.20.6.1, S:A348S
CM.7 Alias of B.1.1.529.2.3.20.7, Japan/Singapore, S:F486S
CM.8 Alias of B.1.1.529.2.3.20.8, S:G446S
CM.8.1 Alias of B.1.1.529.2.3.20.8.1, Australia/England, S:F486S
CM.8.1.1 Alias of B.1.1.529.2.3.20.8.1.1, Singapore/Malaysia, S:K147N
CM.8.1.2 Alias of B.1.1.529.2.3.20.8.1.2, Germany/USA, S:K147I
CM.8.1.3 Alias of B.1.1.529.2.3.20.8.1.3, USA, S:Y1272H
CM.8.1.4 Alias of B.1.1.529.2.3.20.8.1.4, ORF1b:N1790D, Philippines, from #1554
CM.9 Alias of B.1.1.529.2.3.20.9, USA/Canada/Israel, S:S256L
CM.10 Alias of B.1.1.529.2.3.20.10, USA/South Korea/Singapore, S:K478T reversion, S:V445A
CM.11 Alias of B.1.1.529.2.3.20.11, USA/South Korea, S:R346T, S:F486S, from #1509
CM.12 Alias of B.1.1.529.2.3.20.12, Hong Kong, US, Australia, Japan, ORF8:T12I, from #1481
BA.2.3.21 Alias of B.1.1.529.2.3.21, Philippines, S:P9L and 493 reversion
DD.1 Alias of B.1.1.529.2.3.21.1, Philippines/Australia, Δ69-70, Δ144, V213E, G339N, R346T, Y449N, N460K, N481K, Q493L, K1205N, from #1287
BA.2.3.22 Alias of B.1.1.529.2.3.22, Philippines/Qatar/Germany, Δ69-70, W152L, N211-, L212I, S255F, R346T, K417T, F490A, A942S from #1462
BA.2.4 Alias of B.1.1.529.2.4, Singapore lineage
BA.2.5 Alias of B.1.1.529.2.5, lineage in Portugal and other countries
BA.2.6 Alias of B.1.1.529.2.6, lineage in France and other countries
BA.2.7 Alias of B.1.1.529.2.7, USA lineage
BA.2.8 Alias of B.1.1.529.2.8, UK lineage, from pango-designation issue #486
BA.2.9 Alias of B.1.1.529.2.9, European lineage, from pango-designation issue #432
BA.2.9.1 Alias of B.1.1.529.2.9.1, UK lineage, from pango-designation issue #530
BA.2.9.2 Alias of B.1.1.529.2.9.2, USA lineage
BA.2.9.3 Alias of B.1.1.529.2.9.3, mainly found in France, England, and Germany, from pango-designation issue #630
BA.2.9.4 Alias of B.1.1.529.2.9.4, mainly found in France, from pango-designation issue #635
BA.2.9.5 Alias of B.1.1.529.2.9.5, Thailand lineage
BA.2.9.6 Alias of B.1.1.529.2.9.6, mainly found in Spain, Denmark and Germany, from pango-designation issue #671
BA.2.9.7 Alias of B.1.1.529.2.9.7, found mainly in USA, from pango-designation issue #864
BA.2.10 Alias of B.1.1.529.2.10, lineage from pango-designation issue #496
BA.2.10.1 Alias of B.1.1.529.2.10.1, lineage in Singapore and other countries
BJ.1 Alias of B.1.1.529.2.10.1.1, mainly found in India (West Bengal), from pango-designation issue #915
BA.2.10.2 Alias of B.1.1.529.2.10.2, mainly found in Japan, from pango-designation issue #569
BA.2.10.3 Alias of B.1.1.529.2.10.3, mainly found in England, India and Bangladesh, from pango-designation issue #609
BA.2.10.4 Alias of B.1.1.529.2.10.4, mainly found in India, from pango-designation issue #898
BA.2.11 Alias of B.1.1.529.2.11, France lineage, from pango-designation issue #491
BA.2.12 Alias of B.1.1.529.2.12, North America and Europe lineage, from pango-designation issue #499
BA.2.12.1 Alias of B.1.1.529.2.12.1, USA and Canada lineage, from pango-designation issue #499
BG.1 Alias of B.1.1.529.2.12.1.1, Peru lineage, from pango-designation issue #679
BG.2 Alias of B.1.1.529.2.12.1.2, mainly found in USA, and Denmark, from pango-designation issue #767
BG.3 Alias of B.1.1.529.2.12.1.3, mainly found in Peru, from pango-designation issue #784
BG.4 Alias of B.1.1.529.2.12.1.4, Israel lineage
BG.5 Alias of B.1.1.529.2.12.1.5, mainly found in USA, from pango-designation issue #763
BG.6 Alias of B.1.1.529.2.12.1.6, Peru lineage, from pango-designation issue #836
BG.7 Alias of B.1.1.529.2.12.1.7, found in Peru, from pango-designation issue #1157
BA.2.12.2 Alias of B.1.1.529.2.12.2, mainly found in Australia, from pango-designation issue #686
BA.2.13 Alias of B.1.1.529.2.13, Europe lineage, from pango-designation issue #531
BA.2.13.1 Alias of B.1.1.529.2.13.1, mainly found in USA, Canada and Colombia, from pango-designation issue #785
BA.2.14 Alias of B.1.1.529.2.14, Denmark lineage, from pango-designation issue #512
BA.2.15 Alias of B.1.1.529.2.15, South Africa lineage, from pango-designation issue #533
BA.2.16 Alias of B.1.1.529.2.16, UK lineage, from pango-designation issue #534
BA.2.17 Alias of B.1.1.529.2.17, Vietnam and Japan lineage, from pango-designation issue #520
BA.2.18 Alias of B.1.1.529.2.18, UK lineage, from pango-designation issue #528
BA.2.19 Alias of B.1.1.529.2.19, Germany lineage, from pango-designation issue #535
BA.2.20 Alias of B.1.1.529.2.20, Canada lineage, from pango-designation issue #544
BA.2.21 Alias of B.1.1.529.2.21, Canada and USA lineage, from pango-designation issue #547
BA.2.22 Alias of B.1.1.529.2.22, UK lineage, from pango-designation issue #562
BA.2.23 Alias of B.1.1.529.2.23, UK lineage, from pango-designation issue #546
BA.2.23.1 Alias of B.1.1.529.2.23.1, mainly found in England, USA and Denmark, from pango-designation issue #532
BA.2.24 Alias of B.1.1.529.2.24, Japan lineage
BA.2.25 Alias of B.1.1.529.2.25, Sweden lineage
BA.2.25.1 Alias of B.1.1.529.2.25.1, Slovakia lineage
BA.2.26 Alias of B.1.1.529.2.26, USA lineage
BA.2.27 Alias of B.1.1.529.2.27, Thailand lineage
BA.2.28 Alias of B.1.1.529.2.28, Singapore lineage
BA.2.29 Alias of B.1.1.529.2.29, Japan lineage
BA.2.30 Alias of B.1.1.529.2.30, Curacao lineage
BA.2.31 Alias of B.1.1.529.2.31, Israel lineage
BA.2.31.1 Alias of B.1.1.529.2.31.1, mainly found in Uganda, defined by S:68T, from pango-designation issue #819
BA.2.32 Alias of B.1.1.529.2.32, Indonesia lineage
BA.2.33 Alias of B.1.1.529.2.33, Australia lineage
BA.2.34 Alias of B.1.1.529.2.34, Norway lineage
BA.2.35 Alias of B.1.1.529.2.35, Predominantly Portugal lineage, from pango-designation issue #554
BA.2.36 Alias of B.1.1.529.2.36, mainly found in Germany, Belgium, England and Denmark, from pango-designation issue #565
BA.2.37 Alias of B.1.1.529.2.37, mainly found in England, Scotland, Wales, from pango-designation issue #572
BA.2.38 Alias of B.1.1.529.2.38, lineage in India and other countries, from pango-designation issue #541
BA.2.38.1 Alias of B.1.1.529.2.38.1, India lineage, from pango-designation issue #809
BA.2.38.2 Alias of B.1.1.529.2.38.2, mainly found in India, from pango-designation issue #828
BA.2.38.3 Alias of B.1.1.529.2.38.3, mainly found in India, from pango-designation issue #840
BA.2.38.4 Alias of B.1.1.529.2.38.4, mainly found in India, from pango-designation issue #746
BH.1 Alias of B.1.1.529.2.38.3.1, mainly found in India, from pango-designation issue #913
BA.2.39 Alias of B.1.1.529.2.39, mainly found in England, from pango-designation issue #575
BA.2.40 Alias of B.1.1.529.2.40, mainly found in Malaysia, England, Denmark and Germany, from pango-designation issue #542
BA.2.40.1 Alias of B.1.1.529.2.40.1, mainly found in Malaysia, England, Germany and Denmark, from pango-designation issue #542
BA.2.41 Alias of B.1.1.529.2.41, mainly found in England and Scotland, from pango-designation issue #586
BA.2.42 Alias of B.1.1.529.2.42, mainly found in Australia, from pango-designation issue #610
BA.2.43 Alias of B.1.1.529.2.43, mainly found in India, from pango-designation issue #612
BA.2.44 Alias of B.1.1.529.2.44, mainly found in Belgium and Luxembourg, from pango-designation issue #613
BA.2.45 Alias of B.1.1.529.2.45, mainly found in Sweden and Denmark, from pango-designation issue #616
BA.2.46 Alias of B.1.1.529.2.46, mainly found in Scotland, from pango-designation issue #626
BA.2.47 Alias of B.1.1.529.2.47, mainly found in Denmark, England, and USA, from pango-designation issue #631
BA.2.48 Alias of B.1.1.529.2.48, mainly found in USA, Scotland and England, from pango-designation issue #634
BA.2.49 Alias of B.1.1.529.2.49, mainly found in France, England and USA, from pango-designation issue #640
BA.2.50 Alias of B.1.1.529.2.50, mainly found in Scotland and England, from pango-designation issue #641
BA.2.51 Alias of B.1.1.529.2.51, mainly found in Denmark, from pango-designation issue #644
BA.2.52 Alias of B.1.1.529.2.52, mainly found in Italy, Germany, Denmark and USA, from pango-designation issue #648
BA.2.53 Alias of B.1.1.529.2.53, mainly found in Denmark, from pango-designation issue #651
BA.2.54 Alias of B.1.1.529.2.54, mainly found in Germany, Spain and Denmark, from pango-designation issue #658
BA.2.55 Alias of B.1.1.529.2.55, mainly found in England, USA and Scotland, from pango-designation issue #660
BA.2.56 Alias of B.1.1.529.2.56, mainly found in Europe, from pango-designation issue #668
BA.2.56.1 Alias of B.1.1.529.2.56.1, mainly found in Japan, from pango-designation issue #745
BA.2.57 Alias of B.1.1.529.2.57, Malaysia, Singapore and Australia lineage
BA.2.58 Alias of B.1.1.529.2.58, Reunion lineage
BA.2.59 Alias of B.1.1.529.2.59, mainly found in USA, from pango-designation issue #672
BA.2.60 Alias of B.1.1.529.2.60, Peru and Chile lineage
BA.2.61 Alias of B.1.1.529.2.61, Singapore lineage
BA.2.62 Alias of B.1.1.529.2.62, Australia lineage
BA.2.63 Alias of B.1.1.529.2.63, Greece lineage
BA.2.64 Alias of B.1.1.529.2.64, Indonesia lineage
BA.2.65 Alias of B.1.1.529.2.65, Canada and USA lineage
BA.2.66 Alias of B.1.1.529.2.66, Canada lineage
BA.2.67 Alias of B.1.1.529.2.67, Slovakia lineage
BA.2.68 Alias of B.1.1.529.2.68, South Korea lineage
BA.2.69 Alias of B.1.1.529.2.69, Martinique lineage
BA.2.70 Alias of B.1.1.529.2.70, Croatia lineage
BA.2.71 Alias of B.1.1.529.2.71, mainly found in Norway, Sweden and Denmark, from pango-designation issue #695
BA.2.72 Alias of B.1.1.529.2.72, mainly found in USA, Germany and Switzerland, from pango-designation issue #698
BA.2.73 Alias of B.1.1.529.2.73, Puerto Rico and USA lineage, from pango-designation issue #632
BA.2.74 Alias of B.1.1.529.2.74, mainly found in India, from pango-designation issue #775
BA.2.75 Alias of B.1.1.529.2.75, mainly found in India, from pango-designation issue #773
BA.2.75.1 Alias of B.1.1.529.2.75.1, mainly found in India from pango-designation issue #856
BL.1 Alias of B.1.1.529.2.75.1.1, mainly found in India from pango-designation issue #944, S:R346T on polytomy
BL.1.1 Alias of B.1.1.529.2.75.1.1.1, from pango-designation issue #1079, defined by S:G614S
BL.1.2 Alias of B.1.1.529.2.75.1.1.2, mainly Austria, issue #1066, defined by S:G261D, S:V308L
BL.1.3 Alias of B.1.1.529.2.75.1.1.3, Switzerland, Israel, Canada, issue #1124, defined by S:F490L
BL.1.4 Alias of B.1.1.529.2.75.1.1.4, India/England/New Zealand, defined by S:F490V
BL.1.5 Alias of B.1.1.529.2.75.1.1.5, Japan, S:A475V
BL.2 Alias of B.1.1.529.2.75.1.2, mainly found in India, defined by S:R346T on A26612T branch
BL.2.1 Alias of B.1.1.529.2.75.1.2.1, Australia/Belgium, defined by S:K182E
BL.3 Alias of B.1.1.529.2.75.1.3, mainly found in India, defined by ORF1a:P2685S on A26612T branch
BL.4 Alias of B.1.1.529.2.75.1.4, mainly found in India, defined by ORF7a:P45L with 11224T and 22720G branch
BL.5 Alias of B.1.1.529.2.75.1.5, mainly found in Denmark, from pango-designation issue #1105
BL.6 Alias of B.1.1.529.2.75.1.6, mainly South Korea, S:R346T, S:V445A, from issue #1531
BA.2.75.2 Alias of B.1.1.529.2.75.2, mainly found in Asia and Australia, pango-designation issue #963
CA.1 Alias of B.1.1.529.2.75.2.1, USA lineage, defined by S:604I and S:452R, pango-designation issue #1063
CA.2 Alias of B.1.1.529.2.75.2.2, international lineage, defined by S:S494P
CA.3 Alias of B.1.1.529.2.75.2.3, India, defined by N:M101I
CA.3.1 Alias of B.1.1.529.2.75.2.3.1, USA, S:K444M, S:L452R
CA.4 Alias of B.1.1.529.2.75.2.4, New Zealand, S:F486L
CA.5 Alias of B.1.1.529.2.75.2.5, USA, S:A260D, S:Q613H
CA.6 Alias of B.1.1.529.2.75.2.6, India, ORF1a:Y196H
CA.7 Alias of B.1.1.529.2.75.2.7, S:L452R after ORF1a:L3776I
BA.2.75.3 Alias of B.1.1.529.2.75.3, mainly found in India, pango-designation issue #965
BM.1 Alias of B.1.1.529.2.75.3.1, mainly found in India, pango-designation issue #965
BM.1.1 Alias of B.1.1.529.2.75.3.1.1, mainly found in India (West Bengal), defined by S:346T
BM.1.1.1 Alias of B.1.1.529.2.75.3.1.1.1, mainly found in India (West Bengal), defined by S:490S
CJ.1 Alias of B.1.1.529.2.75.3.1.1.1.1, S:S486P, #1171
CJ.1.1 Alias of B.1.1.529.2.75.3.1.1.1.1.1, S:V445A, Singapore/Malaysia/Japan, from issue #1384
CJ.1.2 Alias of B.1.1.529.2.75.3.1.1.1.1.2, ORF1a:L2609F, Sweden/France/England
CJ.1.3 Alias of B.1.1.529.2.75.3.1.1.1.1.3, A261G reversion, G4960A, C14790T, South Korea
BM.1.1.2 Alias of B.1.1.529.2.75.3.1.1.2, England, S:T883I, S:S939F, S:P1079T
BM.1.1.3 Alias of B.1.1.529.2.75.3.1.1.3, India, defined by ORF10:A8V
CV.1 Alias of B.1.1.529.2.75.3.1.1.3.1, Ireland, S:L452R
CV.2 Alias of B.1.1.529.2.75.3.1.1.3.2, Chile, S:486P
BM.1.1.4 Alias of B.1.1.529.2.75.3.1.1.4, S:K356T & S:T572I, from #1438
EP.1 Alias of B.1.1.529.2.75.3.1.1.4.1, S:L452R, Bhutan, from #1676
EP.2 Alias of B.1.1.529.2.75.3.1.1.4.2, S:S1147L, N:G212S, Belgium/Europe
BM.1.1.5 Alias of B.1.1.529.2.75.3.1.1.5, England/Belgium/France, S:N185S & S:L452R
BM.2 Alias of B.1.1.529.2.75.3.2, mainly found in India (Telangana), defined by S:346T
BM.2.1 Alias of B.1.1.529.2.75.3.2.1, India, defined by S:F486V
BM.2.2 Alias of B.1.1.529.2.75.3.2.2, Japan/Israel, defined by S:L455S
BM.2.3 Alias of B.1.1.529.2.75.3.2.3, India/Singapore, defined by S:F486I
BM.3 Alias of B.1.1.529.2.75.3.3, found in Nepal and globally, defined by ORF1b:P1652S
BM.4 Alias of B.1.1.529.2.75.3.4, mainly found in India, defined by ORF1a:Q1198K, from pango-designation issue #957
BM.4.1 Alias of B.1.1.529.2.75.3.4.1, mainly found in India, defined by S:F486S, from pango-designation issue #957
BM.4.1.1 Alias of B.1.1.529.2.75.3.4.1.1, mainly found in India, defined by S:346T
CH.1 Alias of B.1.1.529.2.75.3.4.1.1.1, defined by S:K444T, issue #1113
CH.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1, defined by S:L452R, issue #1113
CH.1.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1, defined by S:N185D
DV.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.1, UK, defined by S:L176F
DV.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.1.1, defined by S:Q613H and N:T265I, from #1720
DV.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.2, UK, defined by S:I569V
DV.3 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.3, UK, defined by ORF1a:E377K
DV.3.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.3.1 found mainly in Portugal and UK, from pango-designation issue #1626
DV.4 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.4, Malaysia/Singapore, S:I714V, from #1617
DV.5 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.5, England/Australia, ORF1a:R24C, S:613H, from #1753
CH.1.1.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.2, defined by S:T883I, ORF1a:Y1846C, ORF1a:G2294S on T27576C branch
CH.1.1.3 Alias of B.1.1.529.2.75.3.4.1.1.1.1.3, S:S255P, New Zealand/Australia/Hong Kong, from #1405
CH.1.1.4 Alias of B.1.1.529.2.75.3.4.1.1.1.1.4, S:H681R, Austria, from #1370
CH.1.1.5 Alias of B.1.1.529.2.75.3.4.1.1.1.1.5, ORF3a:P104S, found mainly in Denmark and UK, from pango-designation issue #1539
CH.1.1.6 Alias of B.1.1.529.2.75.3.4.1.1.1.1.6, UK, defined by S:T732I
CH.1.1.7 Alias of B.1.1.529.2.75.3.4.1.1.1.1.7, New Zealand/Australia, defined by ORF1a:F143C
CH.1.1.8 Alias of B.1.1.529.2.75.3.4.1.1.1.1.8, Ireland, defined by S:A846V
CH.1.1.9 Alias of B.1.1.529.2.75.3.4.1.1.1.1.9, England, defined by S:I1232V
CH.1.1.10 Alias of B.1.1.529.2.75.3.4.1.1.1.1.10, Ireland, ORF1a:G442S
CH.1.1.11 Alias of B.1.1.529.2.75.3.4.1.1.1.1.11, ORF1a:A1176T
CH.1.1.12 Alias of B.1.1.529.2.75.3.4.1.1.1.1.12, S:L858I on ORF1a:A486V branch, Denmark
FS.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.12.1, found mainly in Denmark, from pango-designation issue #1816
CH.1.1.13 Alias of B.1.1.529.2.75.3.4.1.1.1.1.13, ORF3a:S171L
CH.1.1.14 Alias of B.1.1.529.2.75.3.4.1.1.1.1.14, N:T362I
CH.1.1.15 Alias of B.1.1.529.2.75.3.4.1.1.1.1.15, found mainly in Lithuania, Germany and UK, from pango-designation issue #1726
CH.1.1.16 Alias of B.1.1.529.2.75.3.4.1.1.1.1.16, S:613H, ORF3a:S26L, on C193T branch, Germany/Sweden, from #1753
CH.1.1.17 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17, M:S212G, on C21811T branch, from #1753
FK.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1, found mainly in New Zealand and Australia, from pango-designation issue #1718
FK.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.1, found mainly in New Zealand and Australia, from pango-designation issue #1881
FK.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.17.1.2, ORF1a:L384F, ORF1a:R550H
CH.1.1.18 Alias of B.1.1.529.2.75.3.4.1.1.1.1.18, S:K187T, related to #1747
CH.1.1.19 Alias of B.1.1.529.2.75.3.4.1.1.1.1.19, C2773T, Europe
FJ.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.19.1, ORF1a:A1204V, England
CH.1.1.20 Alias of B.1.1.529.2.75.3.4.1.1.1.1.20, England, T299I, R403K, D1165G, from #1736
CH.1.1.21 Alias of B.1.1.529.2.75.3.4.1.1.1.1.21, England, S:N481Y, from #1799
CH.1.1.22 Alias of B.1.1.529.2.75.3.4.1.1.1.1.22, found mainly in Denmark, from pango-designation issue #1670
CH.1.1.23 Alias of B.1.1.529.2.75.3.4.1.1.1.1.23, found mainly in UK, from pango-designation issue #1862
CH.2 Alias of B.1.1.529.2.75.3.4.1.1.2, defined by S:Q183H
CH.3 Alias of B.1.1.529.2.75.3.4.1.1.3, defined by S:486P on ORF1b:Q2425R branch
CH.3.1 Alias of B.1.1.529.2.75.3.4.1.1.3.1, S:S494P, Australia/Indonesia, from #1421
BM.5 Alias of B.1.1.529.2.75.3.5, mainly found in India, defined by S:L455S, from pango-designation issue #1047
BM.6 Alias of B.1.1.529.2.75.3.6, India, defined by S:G75V followed by S:L455S
BA.2.75.4 Alias of B.1.1.529.2.75.4, mainly found in India, pango-designation issue #935
BR.1 Alias of B.1.1.529.2.75.4.1, mainly found in India (Karnataka), defined by S:K444M
BR.1.1 Alias of B.1.1.529.2.75.4.1.1, Austria/Australia, S:T307S
BR.1.2 Alias of B.1.1.529.2.75.4.1.2, Italy/USA, S:F486S
BR.2 Alias of B.1.1.529.2.75.4.2, found in Australia, defined by S:R346T and S:486I, from issue #1063
BR.2.1 Alias of B.1.1.529.2.75.4.2.1, found mainly in Australia, from pango-designation issue #1292
BR.3 Alias of B.1.1.529.2.75.4.3, India, Australia, Austria, defined by S:R346T, from issue #1063
BR.4 Alias of B.1.1.529.2.75.4.4, S:K444T and S:G446S reversion, from issue #1179
BR.5 Alias of B.1.1.529.2.75.4.5 found mainly in SouthKorea and usa, from pango-designation issue #1345
BA.2.75.5 Alias of B.1.1.529.2.75.5, mainly found in India, pango-designation issue #947
BN.1 Alias of B.1.1.529.2.75.5.1, mainly found in India, pango-designation issue #994
BN.1.1 Alias of B.1.1.529.2.75.5.1.1, India/Austria, S:S494P
BN.1.1.1 Alias of B.1.1.529.2.75.5.1.1.1, Austria, S:N185D
BN.1.2 Alias of B.1.1.529.2.75.5.1.2, Singapore/England, E:D72G
BN.1.2.1 Alias of B.1.1.529.2.75.5.1.2.1, England/Portugal, S:T470N
BN.1.2.2 Alias of B.1.1.529.2.75.5.1.2.2, C29546T
BN.1.2.3 Alias of B.1.1.529.2.75.5.1.2.3, C1471T
FR.1 Alias of B.1.1.529.2.75.5.1.2.3.1, found mainly in Japan, Taiwan and USA, from pango-designation issue #1814
BN.1.2.4 Alias of B.1.1.529.2.75.5.1.2.4, ORF1b:D1746H
BN.1.3 Alias of B.1.1.529.2.75.5.1.3, India, ORF3a:T229I
BN.1.3.1 Alias of B.1.1.529.2.75.5.1.3.1, found mainly in Israel, England and Denmark, from pango-designation issue #1257
DS.1 Alias of B.1.1.529.2.75.5.1.3.1.1, USA/Ireland/Austria, S:F486S, S:R403K
DS.2 Alias of B.1.1.529.2.75.5.1.3.1.2, Germany, S:T572I
DS.3 Alias of B.1.1.529.2.75.5.1.3.1.3, Denmark, ORF3a:G254V
BN.1.3.2 Alias of B.1.1.529.2.75.5.1.3.2, S:V445A found mainly in Japan, from pango-designation issue #1397
BN.1.3.3 Alias of B.1.1.529.2.75.5.1.3.3, S:E147Q, mainly Europe
BN.1.3.4 Alias of B.1.1.529.2.75.5.1.3.4, S:V445A, Japan/England/NZ/Russia
BN.1.3.5 Alias of B.1.1.529.2.75.5.1.3.5 ORF7b:C41W, found mainly in SouthKorea, Japan and USA, from pango-designation issue #1516
BN.1.3.6 Alias of B.1.1.529.2.75.5.1.3.6 M:R174Q
BN.1.3.7 Alias of B.1.1.529.2.75.5.1.3.7 ORF1a:T1429I
BN.1.3.8 Alias of B.1.1.529.2.75.5.1.3.8 S:D1139H
EJ.1 Alias of B.1.1.529.2.75.5.1.3.8.1, S:I1225V
EJ.2 Alias of B.1.1.529.2.75.5.1.3.8.2, ORF1a:T4355I
BN.1.3.9 Alias of B.1.1.529.2.75.5.1.3.9 S:V83F, #1748
BN.1.3.10 Alias of B.1.1.529.2.75.5.1.3.10 ORF1a:Q1918R, C13608T, Asia/Oceania
BN.1.4 Alias of B.1.1.529.2.75.5.1.4, India, 27501C
BN.1.4.1 Alias of B.1.1.529.2.75.5.1.4.1, S:G261V & S:T678I, from #1417
BN.1.4.2 Alias of B.1.1.529.2.75.5.1.4.2, S:Q1113K
BN.1.4.3 Alias of B.1.1.529.2.75.5.1.4.3, ORF1a:P1096T
BN.1.4.4 Alias of B.1.1.529.2.75.5.1.4.4, ORF1b:V1149L, ORF1b:V1723M
BN.1.4.5 Alias of B.1.1.529.2.75.5.1.4.5, ORF1a:T3287I
BN.1.5 Alias of B.1.1.529.2.75.5.1.5, ORF1a:S2103F
BN.1.5.1 Alias of B.1.1.529.2.75.5.1.5.1, New Zealand, S:S514T
BN.1.5.2 Alias of B.1.1.529.2.75.5.1.5.2, S:N481K
BN.1.6 Alias of B.1.1.529.2.75.5.1.6, S:D1139H
BN.1.7 Alias of B.1.1.529.2.75.5.1.7, England, S:M177T, S:H1101Y
BN.1.8 Alias of B.1.1.529.2.75.5.1.8, Iceland/USA, S:A475V
BN.1.9 Alias of B.1.1.529.2.75.5.1.9, found mainly in Indonesia, from pango-designation issue #1327
BN.1.10 Alias of B.1.1.529.2.75.5.1.10, defined by S:Y145H
BN.1.11 Alias of B.1.1.529.2.75.5.1.11, South Korea, defined by S:L176F, S:D936H
BN.2 Alias of B.1.1.529.2.75.5.2, mainly found in India, pango-designation issue #1021
BN.2.1 Alias of B.1.1.529.2.75.5.2.1, mainly USA and Canada lineage, defined by S:H49Y and S:F490S
BN.3 Alias of B.1.1.529.2.75.5.3, defined by S:N450D on ORF1a:392D branch
BN.3.1 Alias of B.1.1.529.2.75.5.3.1, South Korea/Austria/Israel/Belgium, defined by S:F490S
BN.4 Alias of B.1.1.529.2.75.5.4, Netherlands/Germany, defined by S:F490S on ORF1a:392D branch
BN.5 Alias of B.1.1.529.2.75.5.5, India, defined by ORF1a:V2995M
BN.6 Alias of B.1.1.529.2.75.5.6, India, defined by ORF1a:T3959A
BA.2.75.6 Alias of B.1.1.529.2.75.6, mainly found in India, defined by S:R346T on the BA.2.75 polytomy
BY.1 Alias of B.1.1.529.2.75.6.1, mainly found in India, defined by S:F486S on BA.2.75.6
BY.1.1 Alias of B.1.1.529.2.75.6.1.1, S:L452R
BY.1.1.1 Alias of B.1.1.529.2.75.6.1.1.1, Europe, S:N185D, S:H207R,
BY.1.2 Alias of B.1.1.529.2.75.6.1.2, Europe, 26828T
BY.1.2.1 Alias of B.1.1.529.2.75.6.1.2.1, Austria/England, S:S494P
BA.2.75.7 Alias of B.1.1.529.2.75.7, mainly found in India, defined by S:F486S on the BA.2.75 polytomy
BA.2.75.8 Alias of B.1.1.529.2.75.8, Singapore/Australia, defined by S:L452Q, issue #1085
BA.2.75.9 Alias of B.1.1.529.2.75.9, India, defined by S:R346T after 17679T
CB.1 Alias of B.1.1.529.2.75.9.1, England, defined by S:486V
BA.2.75.10 Alias of B.1.1.529.2.75.10, India, ORF1a:T3959A
BA.2.76 Alias of B.1.1.529.2.76, mainly found in India and USA, from pango-designation issue #787
BA.2.76.1 Alias of B.1.1.529.2.76.1, mainly found in India, from pango-designation issue #899
BA.2.76.2 Alias of B.1.1.529.2.76.2, found in Japan, from pango-designation issue #939
BA.2.77 Alias of B.1.1.529.2.77, mainly found in Ireland, England and USA, from pango-designation issue #732
BA.2.78 Alias of B.1.1.529.2.78, mainly found in India, from pango-designation issue #814
BA.2.79 Alias of B.1.1.529.2.79, Kuwait and Israel lineage, from pango-designation issue #812
BA.2.79.1 Alias of B.1.1.529.2.79.1, India lineage, from pango-designation issue #814
BA.2.80 Alias of B.1.1.529.2.80, found in Denmark, from pango-designation issue #733
BA.2.81 Alias of B.1.1.529.2.81, Brazil lineage
BA.2.82 Alias of B.1.1.529.2.82, mainly found in Australia, Israel and Japan, from pango-designation issue #874
BA.2.83 Alias of B.1.1.529.2.83, mainly found in India, from pango-designation issue #1053
BA.2.85 Alias of B.1.1.529.2.85, mainly found in Japan, from pango-designation issue #983
BA.3 Alias of B.1.1.529.3, from pango-designation issue #367
BA.3.1 Alias of B.1.1.529.3.1, mainly found in Poland, from pango-designation issue #540
BA.4 Alias of B.1.1.529.4, from pango-designation issue #517
BA.4.1 Alias of B.1.1.529.4.1, mainly found in South Africa, from pango-designation issue #548
BA.4.1.1 Alias of B.1.1.529.4.1.1, mainly found in South Africa and Germany, from pango-designation issue #667
BA.4.1.2 Alias of B.1.1.529.4.1.2, Austria lineage
BA.4.1.3 Alias of B.1.1.529.4.1.3, Israel lineage
BA.4.1.4 Alias of B.1.1.529.4.1.4, Israel lineage
BA.4.1.5 Alias of B.1.1.529.4.1.5, Israel lineage
BA.4.1.6 Alias of B.1.1.529.4.1.6, USA lineage
BA.4.1.7 Alias of B.1.1.529.4.1.7, Australia lineage
BA.4.1.8 Alias of B.1.1.529.4.1.8, mainly found in England, USA, South Africa and Mexico, from pango-designation issue #800
BA.4.1.9 Alias of B.1.1.529.4.1.9, mainly found in Zambia, USA, England and Mexico, from pango-designation issue #926
BA.4.1.10 Alias of B.1.1.529.4.1.10, mainly found in France, from issue #1073, defined by S:N354D, S:R346T
BA.4.1.11 Alias of B.1.1.529.4.1.11 found mainly in Denmark, from pango-designation issue #1606
CS.1 Alias of B.1.1.529.4.1.10.1, Denmark, Netherlands, England, defined by S:K444R
BA.4.2 Alias of B.1.1.529.4.2, USA lineage
BA.4.3 Alias of B.1.1.529.4.3, Israel lineage
BA.4.4 Alias of B.1.1.529.4.4, USA lineage
BA.4.5 Alias of B.1.1.529.4.5, Australia lineage
BA.4.6 Alias of B.1.1.529.4.6, mainly found in USA, England and Denmark, from pango-designation issue #741