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Breakpoint is likely somewhere between nuc 23665 (spike 701) and 25415 (ORF3a 8). Everything upstream is from a FL.1.5.1 donor, and everything from 25416 to 3' is from BQ.1.2.2 donor.
Unique AA changes donated by BQ.1.2.2: ORF3:255/258del, ORF8:C90stop
c19850727
changed the title
Potential FL.1.5.1 x BQ.1.2.2 Recombinant, Nigeria and US (7 seqs as of 2023-08-07)
Potential FL.1.5.1 x BQ.1.2.2 Recombinant, Nigeria, Canada and US (9 seqs as of 2023-08-30)
Aug 30, 2023
As preproposed here: sars-cov-2-variants/lineage-proposals#630
Query: T2128C, T18096C, C28163A
Earliest sequence: EPI_ISL_18110467, 2023-07-20, Nigeria
Most recent sequence: EPI_ISL_18126488, 2023-08-08, US-NJ
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_37ef4_94ca10.json?c=gt-nuc_2128&label=id:node_10765449
Breakpoint is likely somewhere between nuc 23665 (spike 701) and 25415 (ORF3a 8). Everything upstream is from a FL.1.5.1 donor, and everything from 25416 to 3' is from BQ.1.2.2 donor.
Unique AA changes donated by BQ.1.2.2: ORF3:255/258del, ORF8:C90stop
Sequences: EPI_ISL_18098706, EPI_ISL_18110467, EPI_ISL_18110470, EPI_ISL_18111443 (low quality), EPI_ISL_18119590, EPI_ISL_18119920, EPI_ISL_18126488
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