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XCR: New GK.1.1/FU.1 recombinant in USA(21 seqs, 2 countries, 2 with S:ins214ESGL) #2323

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aviczhl2 opened this issue Oct 13, 2023 · 1 comment
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@aviczhl2
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aviczhl2 commented Oct 13, 2023

From sars-cov-2-variants/lineage-proposals#885

XBB.1.5.70+
C23280T(S:T573I),C23673T(S:S704L), A24373C,G25045A(rev),A25359G(S:K1266R),A26708G, T27059C(rev),T28005C(Orf8:38 rev),T28297C(Orf9b:I5T),A28447G(Orf9b:N55S), T29386C

C23280T,C23673T from GK.1.1
A24373C,G25045A(rev),A25359G(S:K1266R),A26708G, T27059C(rev),T28005C(Orf8:38 rev),T28297C(Orf9b:I5T),A28447G(Orf9b:N55S), T29386C from an American FU.1 branch

GK.1.1---FU.1
Breakpoint between 23674 and 24372

GISAID query: A24373C,A25359G,C23280T
No. of seqs: 21(USA, 1 from Germany)
20 using the given query, plus EPI_ISL_18357618.

First: EPI_ISL_18266013, FL, 2023-8-23
Latest: EPI_ISL_18379363, WA, 2023-9-28

There are 2 seqs with S:ins214ESGL, ins_22204GAGTCAGGCTTA thanks @ryhisner.

GISAID query for ins214ESGL branch: A24373C,A25359G,C23280T,ins22204

usher

image

FU.1-side donor:

image

@aviczhl2 aviczhl2 changed the title New GK.1.1/FU.1 recombinant in USA(21 seqs, 2 countries) New GK.1.1/FU.1 recombinant in USA(21 seqs, 2 countries, 2 with S_ins214ESGL) Oct 13, 2023
@aviczhl2 aviczhl2 changed the title New GK.1.1/FU.1 recombinant in USA(21 seqs, 2 countries, 2 with S_ins214ESGL) New GK.1.1/FU.1 recombinant in USA(21 seqs, 2 countries, 2 with S:ins214ESGL) Oct 13, 2023
@corneliusroemer corneliusroemer added this to the XCR milestone Oct 13, 2023
@JosetteSchoenma
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XCR

@aviczhl2 aviczhl2 changed the title New GK.1.1/FU.1 recombinant in USA(21 seqs, 2 countries, 2 with S:ins214ESGL) XCR: New GK.1.1/FU.1 recombinant in USA(21 seqs, 2 countries, 2 with S:ins214ESGL) Oct 16, 2023
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