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make -j$(nproc) ARCH=minimal VERSION=sdbg test failed about cp2k@master on openEuler20.03_aarch64 #2455

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Tom-python0121 opened this issue Dec 15, 2022 · 7 comments
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make -j$(nproc) ARCH=minimal VERSION=sdbg test failed about cp2k@master on openEuler20.03_aarch64 #2455

Tom-python0121 opened this issue Dec 15, 2022 · 7 comments

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@Tom-python0121
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Tom-python0121 commented Dec 15, 2022 •
edited

hello,I meet a problem:make -j$(nproc) ARCH=minimal VERSION=sdbg test failed about cp2k@master on openEuler20.03_aarch64

Steps to reproduce the issue

[root@localhost cp2k]# make -j126 ARCH=minimal VERSION=sdbg test
……
>>> /home/stage/root/spack-stage-cp2k-2022.1-eao7ioaielv3adrtxqpvqgxmu6pgfhz6/cp2k/regtesting/TEST-minimal-sdbg-2022-12-15_20-22-40/QS/regtest-loc_powf
    run.inp                                                                                          -    TIMED OUT ( 401.92 sec)
<<< /home/stage/root/spack-stage-cp2k-2022.1-eao7ioaielv3adrtxqpvqgxmu6pgfhz6/cp2k/regtesting/TEST-minimal-sdbg-2022-12-15_20-22-40/QS/regtest-loc_powf (1 of 196) done in 401.92 sec
>>> /home/stage/root/spack-stage-cp2k-2022.1-eao7ioaielv3adrtxqpvqgxmu6pgfhz6/cp2k/regtesting/TEST-minimal-sdbg-2022-12-15_20-22-40/QS/regtest-negf
    li_chain.inp                                                                                     -    TIMED OUT ( 402.10 sec)
<<< /home/stage/root/spack-stage-cp2k-2022.1-eao7ioaielv3adrtxqpvqgxmu6pgfhz6/cp2k/regtesting/TEST-minimal-sdbg-2022-12-15_20-22-40/QS/regtest-negf (2 of 196) done in 402.10 sec
>>> /home/stage/root/spack-stage-cp2k-2022.1-eao7ioaielv3adrtxqpvqgxmu6pgfhz6/cp2k/regtesting/TEST-minimal-sdbg-2022-12-15_20-22-40/QS/regtest-plus_u
    H2O-rks-diag.inp                                                                                 - RUNTIME FAIL (  24.27 sec)
    H2O-rks-otcg.inp                                                                                 - RUNTIME FAIL (  23.40 sec)
    H2O-uks-diag.inp                                                                                 - RUNTIME FAIL (  24.12 sec)
    H2O-uks-otcg.inp                                                                                 - RUNTIME FAIL (  24.97 sec)
    H2O-rks-diag-mulliken.inp                                                                        - RUNTIME FAIL (  28.36 sec)
    H2O-rks-otcg-mulliken.inp                                                                        - RUNTIME FAIL (  28.38 sec)
    H2O-uks-diag-mulliken.inp                                                                        - RUNTIME FAIL (  23.93 sec)
    H2O-uks-otcg-mulliken.inp                                                                        - RUNTIME FAIL (  28.73 sec)
    H2O-rks-diag-lowdin.inp                                                                          - RUNTIME FAIL (  28.53 sec)
    H2O-rks-otcg-lowdin.inp                                                                          - RUNTIME FAIL (  23.80 sec)
    H2O-uks-diag-lowdin.inp                                                                          - RUNTIME FAIL (  28.63 sec)
    H2O-uks-otcg-lowdin.inp                                                                          - RUNTIME FAIL (  28.65 sec)
    H2O-rks-u_ramping.inp                                                                            - RUNTIME FAIL (  28.79 sec)
    H2O-uks-u_ramping.inp                                                                            - RUNTIME FAIL (  24.97 sec)
    H2O-rks-u_ramping_reset.inp                                                                      - RUNTIME FAIL (  28.63 sec)
    H2O-uks-u_ramping_reset.inp                                                                      - RUNTIME FAIL (  23.60 sec)
<<< /home/stage/root/spack-stage-cp2k-2022.1-eao7ioaielv3adrtxqpvqgxmu6pgfhz6/cp2k/regtesting/TEST-minimal-sdbg-2022-12-15_20-22-40/QS/regtest-plus_u (3 of 196) done in 421.76 sec
>>> /home/stage/root/spack-stage-cp2k-2022.1-eao7ioaielv3adrtxqpvqgxmu6pgfhz6/cp2k/regtesting/TEST-minimal-sdbg-2022-12-15_20-22-40/UNIT
    dbt_unittest                                                                                     -           OK ( 261.02 sec)
    dbt_tas_unittest                                                                                 -           OK (  50.17 sec)
    grid_unittest                                                                                    -           OK (  36.79 sec)
    memory_utilities_unittest                                                                        -           OK (   0.03 sec)
    nequip_unittest                                                                                  -           OK (   0.03 sec)
    parallel_rng_types_unittest                                                                      -           OK (   4.62 sec)
    libcp2k_unittest                                                                                 -           OK ( 109.91 sec)

log detail:
test-suilte.log

Can you tell me how to solve this problem?
@mkrack
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mkrack commented Dec 15, 2022 via email •
edited

@Tom-python0121
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@mkrack This command cannot be used and an error will be reported.

Steps to reproduce the issue

========== Make (sdbg) ==========
make --version
GNU Make 4.3
Built for aarch64-openEuler-linux-gnu
Copyright (C) 1988-2020 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

========= Python (sdbg) =========
/usr/bin/env python3 --version
Python 3.8.8
----------------------- External Modules ---------------------------------
DBCSR Version: 2.4.1 (2022-08-29)
---------------------------- Modules -------------------------------------
Module system not installed.
usage: do_regtest.py [-h] [--mpiranks MPIRANKS] [--ompthreads OMPTHREADS] [--maxtasks MAXTASKS] [--num_gpus NUM_GPUS] [--timeout TIMEOUT] [--maxerrors MAXERRORS] [--mpiexec MPIEXEC] [--keepalive]
                     [--debug] [--restrictdir RESTRICTDIR] [--skipdir SKIPDIR] [--workbasedir WORKBASEDIR]
                     arch version
do_regtest.py: error: unrecognized arguments: ”—timeout=900”
make[3]: *** [/home/stage/root/spack-stage-cp2k-2022.1-eao7ioaielv3adrtxqpvqgxmu6pgfhz6/cp2k/Makefile:256: test] Error 2
make[2]: *** [/home/stage/root/spack-stage-cp2k-2022.1-eao7ioaielv3adrtxqpvqgxmu6pgfhz6/cp2k/Makefile:151: test] Error 2
make[1]: *** [/home/stage/root/spack-stage-cp2k-2022.1-eao7ioaielv3adrtxqpvqgxmu6pgfhz6/cp2k/Makefile:128: sdbg] Error 2
make: *** [Makefile:123: test] Error 2

@mkrack
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mkrack commented Dec 16, 2022

As hinted by the usage description of do_regtest.py, try
make -j ARCH=minimal VERSION=sdbg TESTOPTS+=”--timeout 900” test
instead.

@Tom-python0121
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@mkrack It's no use
[root@localhost spack-src]# make -j ARCH=minimal VERSION=sdbg TESTOPTS+=”--timeout 900” test
Discovering programs ...
make: *** No rule to make target '900”'. Stop.

@alazzaro
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alazzaro commented Dec 16, 2022 •
edited

@mkrack It's no use [root@localhost spack-src]# make -j ARCH=minimal VERSION=sdbg TESTOPTS+=”--timeout 900” test Discovering programs ... make: *** No rule to make target '900”'. Stop.

I don't use "+=", could you try with:

make -j ARCH=minimal VERSION=sdbg TESTOPTS="--timeout 900" test

@Tom-python0121
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@alazzaro The TIMED OUT test case problem still occurs.

Steps to reproduce the issue

[root@localhost cp2k]# make -j ARCH=minimal VERSION=sdbg TESTOPTS="--timeout 900" test
……
>>> /home/stage/root/spack-stage-cp2k-2022.1-eao7ioaielv3adrtxqpvqgxmu6pgfhz6/cp2k/regtesting/TEST-minimal-sdbg-2022-12-16_15-11-52/UNIT
    dbt_unittest                                                                                     -           OK ( 250.21 sec)
    dbt_tas_unittest                                                                                 -           OK (  50.80 sec)
    grid_unittest                                                                                    -           OK (  35.45 sec)
    memory_utilities_unittest                                                                        -           OK (   0.03 sec)
    nequip_unittest                                                                                  -           OK (   0.03 sec)
    parallel_rng_types_unittest                                                                      -           OK (   4.61 sec)
    libcp2k_unittest                                                                                 -           OK ( 112.19 sec)
<<< /home/stage/root/spack-stage-cp2k-2022.1-eao7ioaielv3adrtxqpvqgxmu6pgfhz6/cp2k/regtesting/TEST-minimal-sdbg-2022-12-16_15-11-52/UNIT (1 of 196) done in 453.32 sec
>>> /home/stage/root/spack-stage-cp2k-2022.1-eao7ioaielv3adrtxqpvqgxmu6pgfhz6/cp2k/regtesting/TEST-minimal-sdbg-2022-12-16_15-11-52/QS/regtest-negf
    li_chain.inp                                                                                     -    TIMED OUT ( 900.65 sec)
<<< /home/stage/root/spack-stage-cp2k-2022.1-eao7ioaielv3adrtxqpvqgxmu6pgfhz6/cp2k/regtesting/TEST-minimal-sdbg-2022-12-16_15-11-52/QS/regtest-negf (2 of 196) done in 900.65 sec
>>> /home/stage/root/spack-stage-cp2k-2022.1-eao7ioaielv3adrtxqpvqgxmu6pgfhz6/cp2k/regtesting/TEST-minimal-sdbg-2022-12-16_15-11-52/QS/regtest-loc_powf
    run.inp                                                                                          -    TIMED OUT ( 901.06 sec)

Same as the log above.

@alazzaro
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We can compare your timings with the https://storage.googleapis.com/cp2k-ci/dashboard_minimal_report.txt
For instance, your libcp2k_unittest takes 112.19s, while the CP2K dashboard reports 2.29s.
For the test li_chain.inp the dashboard reports 271.07s. So, my conclusion is that there is something which makes your execution very slow. Can it be that you are oversubscribing the number of cores? There is an option --maxtasks=2 that you can use in TESTOPTS=, i.e. TESTOPTS="--maxtasks=2 --timeout 900"

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4 participants
@oschuett @alazzaro @mkrack @Tom-python0121