utils.py

from datetime import datetime

import asyncio
import csv
import difflib
import demjson3 as demjson
import numpy as np
import json
import pytz
import os
import faiss
import tiktoken
import glob
import sqlite3
import fitz
from tqdm import tqdm
from memgpt.openai_tools import async_get_embedding_with_backoff

def count_tokens(s: str, model: str = "gpt-4") -> int:
    encoding = tiktoken.encoding_for_model(model)
    return len(encoding.encode(s))

# DEBUG = True
DEBUG = False
def printd(*args, **kwargs):
    if DEBUG:
        print(*args, **kwargs)

def cosine_similarity(a, b):
    return np.dot(a, b) / (np.linalg.norm(a) * np.linalg.norm(b))

def united_diff(str1, str2):
    lines1 = str1.splitlines(True)
    lines2 = str2.splitlines(True)
    diff = difflib.unified_diff(lines1, lines2)
    return ''.join(diff)

def get_local_time_military():
    # Get the current time in UTC
    current_time_utc = datetime.now(pytz.utc)

    # Convert to San Francisco's time zone (PST/PDT)
    sf_time_zone = pytz.timezone('America/Los_Angeles')
    local_time = current_time_utc.astimezone(sf_time_zone)

    # You may format it as you desire
    formatted_time = local_time.strftime("%Y-%m-%d %H:%M:%S %Z%z")

    return formatted_time

def get_local_time():
    # Get the current time in UTC
    current_time_utc = datetime.now(pytz.utc)

    # Convert to San Francisco's time zone (PST/PDT)
    sf_time_zone = pytz.timezone('America/Los_Angeles')
    local_time = current_time_utc.astimezone(sf_time_zone)

    # You may format it as you desire, including AM/PM
    formatted_time = local_time.strftime("%Y-%m-%d %I:%M:%S %p %Z%z")

    return formatted_time

def parse_json(string):
    result = None
    try:
        result = json.loads(string)
        return result
    except Exception as e:
        print(f"Error parsing json with json package: {e}")

    try:
        result = demjson.decode(string)
        return result
    except demjson.JSONDecodeError as e:
        print(f"Error parsing json with demjson package: {e}")
        raise e

def prepare_archival_index(folder):
    index_file = os.path.join(folder, "all_docs.index")
    index = faiss.read_index(index_file)

    archival_database_file = os.path.join(folder, "all_docs.jsonl")
    archival_database = []
    with open(archival_database_file, 'rt') as f:
        all_data = [json.loads(line) for line in f]
    for doc in all_data:
        total = len(doc)
        for i, passage in enumerate(doc):
            archival_database.append({
                'content': f"[Title: {passage['title']}, {i}/{total}] {passage['text']}",
                'timestamp': get_local_time(),
            })  
    return index, archival_database

def read_in_chunks(file_object, chunk_size):
    while True:
        data = file_object.read(chunk_size)
        if not data:
            break
        yield data

def read_pdf_in_chunks(file, chunk_size):
    doc = fitz.open(file)
    for page in doc:
        text = page.get_text()
        yield text

def read_in_rows_csv(file_object, chunk_size):
    csvreader = csv.reader(file_object)
    header = next(csvreader)
    for row in csvreader:
        next_row_terms = []
        for h, v in zip(header, row):
            next_row_terms.append(f"{h}={v}")
        next_row_str = ', '.join(next_row_terms)
        yield next_row_str

def prepare_archival_index_from_files(glob_pattern, tkns_per_chunk=300, model='gpt-4'):
    encoding = tiktoken.encoding_for_model(model)
    files = glob.glob(glob_pattern)
    return chunk_files(files, tkns_per_chunk, model)

def total_bytes(pattern):
    total = 0
    for filename in glob.glob(pattern):
        if os.path.isfile(filename):  # ensure it's a file and not a directory
            total += os.path.getsize(filename)
    return total

def chunk_file(file, tkns_per_chunk=300, model='gpt-4'):
    encoding = tiktoken.encoding_for_model(model)
    with open(file, 'r') as f:
        if file.endswith('.pdf'):
            lines = [l for l in read_pdf_in_chunks(file, tkns_per_chunk*8)]
            if len(lines) == 0:
                print(f"Warning: {file} did not have any extractable text.")
        elif file.endswith('.csv'):
            lines = [l for l in read_in_rows_csv(f, tkns_per_chunk*8)]
        else:
            lines = [l for l in read_in_chunks(f, tkns_per_chunk*4)]
    curr_chunk = []
    curr_token_ct = 0
    for i, line in enumerate(lines):
        line = line.rstrip()
        line = line.lstrip()
        line += '\n'
        try:
            line_token_ct = len(encoding.encode(line))
        except Exception as e:
            line_token_ct = len(line.split(' ')) / .75
            print(f"Could not encode line {i}, estimating it to be {line_token_ct} tokens") 
            print(e)
        if line_token_ct > tkns_per_chunk:
            if len(curr_chunk) > 0:
                yield ''.join(curr_chunk)
                curr_chunk = []
                curr_token_ct = 0
            yield line[:3200]
            continue
        curr_token_ct += line_token_ct
        curr_chunk.append(line)
        if curr_token_ct > tkns_per_chunk:
            yield ''.join(curr_chunk)
            curr_chunk = []
            curr_token_ct = 0

    if len(curr_chunk) > 0:
        yield ''.join(curr_chunk)

def chunk_files(files, tkns_per_chunk=300, model='gpt-4'):
    archival_database = []
    for file in files:
        timestamp = os.path.getmtime(file)
        formatted_time = datetime.fromtimestamp(timestamp).strftime("%Y-%m-%d %I:%M:%S %p %Z%z")
        file_stem = file.split('/')[-1]
        chunks = [c for c in chunk_file(file, tkns_per_chunk, model)]
        for i, chunk in enumerate(chunks):
            archival_database.append({
                'content': f"[File: {file_stem} Part {i}/{len(chunks)}] {chunk}",
                'timestamp': formatted_time,
            })
    return archival_database

def chunk_files_for_jsonl(files, tkns_per_chunk=300, model='gpt-4'):
    ret = []
    for file in files:
        file_stem = file.split('/')[-1]
        curr_file = []
        for chunk in chunk_file(file, tkns_per_chunk, model):
            curr_file.append({
                'title': file_stem,
                'text': chunk,
            })
        ret.append(curr_file)
    return ret

async def process_chunk(i, chunk, model):
    try:
        return i, await async_get_embedding_with_backoff(chunk['content'], model=model)
    except Exception as e:
        print(chunk)
        raise e

async def process_concurrently(archival_database, model, concurrency=10):
    # Create a semaphore to limit the number of concurrent tasks
    semaphore = asyncio.Semaphore(concurrency)

    async def bounded_process_chunk(i, chunk):
        async with semaphore:
            return await process_chunk(i, chunk, model)

    # Create a list of tasks for chunks
    embedding_data = [0 for _ in archival_database]
    tasks = [bounded_process_chunk(i, chunk) for i, chunk in enumerate(archival_database)]

    for future in tqdm(asyncio.as_completed(tasks), total=len(archival_database), desc="Processing file chunks"):
        i, result = await future
        embedding_data[i] = result
    
    return embedding_data

async def prepare_archival_index_from_files_compute_embeddings(glob_pattern, tkns_per_chunk=300, model='gpt-4', embeddings_model='text-embedding-ada-002'):
    files = sorted(glob.glob(glob_pattern))
    save_dir = "archival_index_from_files_" + get_local_time().replace(' ', '_').replace(':', '_')
    os.makedirs(save_dir, exist_ok=True)
    total_tokens = total_bytes(glob_pattern) / 3
    price_estimate = total_tokens / 1000 * .0001
    confirm = input(f"Computing embeddings over {len(files)} files. This will cost ~${price_estimate:.2f}. Continue? [y/n] ")
    if confirm != 'y':
        raise Exception("embeddings were not computed")

    # chunk the files, make embeddings
    archival_database = chunk_files(files, tkns_per_chunk, model)
    embedding_data = await process_concurrently(archival_database, embeddings_model)
    embeddings_file = os.path.join(save_dir, "embeddings.json")
    with open(embeddings_file, 'w') as f:
        print(f"Saving embeddings to {embeddings_file}")
        json.dump(embedding_data, f)
    
    # make all_text.json
    archival_storage_file = os.path.join(save_dir, "all_docs.jsonl")
    chunks_by_file = chunk_files_for_jsonl(files, tkns_per_chunk, model)
    with open(archival_storage_file, 'w') as f:
        print(f"Saving archival storage with preloaded files to {archival_storage_file}")
        for c in chunks_by_file:
            json.dump(c, f)
            f.write('\n')

    # make the faiss index
    index = faiss.IndexFlatL2(1536)
    data = np.array(embedding_data).astype('float32')
    try:
        index.add(data)
    except Exception as e:
        print(data)
        raise e
    index_file = os.path.join(save_dir, "all_docs.index")
    print(f"Saving faiss index {index_file}")
    faiss.write_index(index, index_file)
    return save_dir

def read_database_as_list(database_name):
    result_list = [] 

    try:
        conn = sqlite3.connect(database_name)
        cursor = conn.cursor()
        cursor.execute("SELECT name FROM sqlite_master WHERE type='table';")
        table_names = cursor.fetchall()
        for table_name in table_names:
            cursor.execute(f"PRAGMA table_info({table_name[0]});")
            schema_rows = cursor.fetchall()
            columns = [row[1] for row in schema_rows]
            cursor.execute(f"SELECT * FROM {table_name[0]};")
            rows = cursor.fetchall()
            result_list.append(f"Table: {table_name[0]}")  # Add table name to the list
            schema_row = "\t".join(columns)
            result_list.append(schema_row)
            for row in rows:
                data_row = "\t".join(map(str, row))
                result_list.append(data_row)
        conn.close()
    except sqlite3.Error as e:
        result_list.append(f"Error reading database: {str(e)}")
    except Exception as e:
        result_list.append(f"Error: {str(e)}")
    return result_list