GitHub - VollmerLab/Trans2Kegg: Annotation pipeline for assigning KEGG orthologs to transcriptome or predicted protein sequences.

VollmerLab / Trans2Kegg Public

Annotation pipeline for assigning KEGG orthologs to transcriptome or predicted protein sequences.

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Name		Name	Last commit message	Last commit date
Latest commit History 80 Commits
R		R
inst		inst
man		man
tests		tests
vignettes		vignettes
.Rbuildignore		.Rbuildignore
.gitignore		.gitignore
DESCRIPTION		DESCRIPTION
Intercept.csv		Intercept.csv
Menthol_Menthol_vs_NoMenthol.csv		Menthol_Menthol_vs_NoMenthol.csv
NAMESPACE		NAMESPACE
NEWS		NEWS
Test.R		Test.R
Trans2Kegg.R		Trans2Kegg.R
Trans2Kegg.html		Trans2Kegg.html
Trans2Kegg.sh		Trans2Kegg.sh
VibrioVibrio.MentholMenthol.csv		VibrioVibrio.MentholMenthol.csv
Vibrio_Vibrio_vs_NoVibrio.csv		Vibrio_Vibrio_vs_NoVibrio.csv
annotateNCBI.R		annotateNCBI.R
blastResult.csv		blastResult.csv
build.err		build.err
build.sh		build.sh
deTrans.fa		deTrans.fa
deWithPathsAndDetails.csv		deWithPathsAndDetails.csv
dfAll.csv		dfAll.csv
dfRefs.csv		dfRefs.csv
dfVibrio.csv		dfVibrio.csv
rox.R		rox.R
testAws.R		testAws.R
testNCBI.R		testNCBI.R
todo.md		todo.md
uniToKO.csv		uniToKO.csv