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Crop Diversity HPC Help

Hello! Here you'll find the documentation for the UK's Crop Diversity Bioinformatics High Performance Computing (HPC) Linux cluster - gruffalo - and its associated data storage and services.

Important

Run by the James Hutton Institute's Information & Computational Sciences (ICS) Research Computing team, and the Scientific Computing section of NIAB's IT team, this resource supports the computational needs of researchers from six UK institutions. See :doc:`organizations` for details.

Note

Compute clusters contain a lot of CPUs, so it's worth seeing how we're :doc:`cpus`.

.. toctree::
   :maxdepth: 1
   :caption: Introduction

   faq
   system-overview

.. toctree::
   :maxdepth: 1
   :caption: Getting started

   user-accounts
   ssh
   guest-accounts

.. toctree::
   :maxdepth: 2
   :caption: High performance computing

   slurm-overview
   slurm-policy
   slurm-shortcuts
   bioconda
   compiling
   file-compression
   singularity
   gpu
   machine-learning
   apps
   database-mirrors
   openmpi
   green-computing

.. toctree::
   :maxdepth: 2
   :caption: Data storage

   data-storage
   backups
   file-transfers
   samba

.. toctree::
   :maxdepth: 2
   :caption: Miscellaneous

   contact-us
   monitoring
   linux-basics
   tips

.. toctree::
   :maxdepth: 1
   :caption: The legal stuff

   organizations
   sla
   acceptable-use
   gdpr

Note

Use the Edit on GitHub links to make or suggest changes or additions to this help; new or updated pages are synced every five minutes.