Hello! Here you'll find the documentation for the UK's Crop Diversity Bioinformatics High Performance Computing (HPC) Linux cluster - gruffalo - and its associated data storage and services.
Important
Run by the James Hutton Institute's Information & Computational Sciences (ICS) Research Computing team, and the Scientific Computing section of NIAB's IT team, this resource supports the computational needs of researchers from six UK institutions. See :doc:`organizations` for details.
Note
Compute clusters contain a lot of CPUs, so it's worth seeing how we're :doc:`cpus`.
.. toctree:: :maxdepth: 1 :caption: Introduction faq system-overview performance
.. toctree:: :maxdepth: 1 :caption: Getting started user-accounts ssh
.. toctree:: :maxdepth: 2 :caption: High performance computing slurm-overview slurm-policy slurm-shortcuts bioconda compiling file-compression singularity gpu machine-learning apps database-mirrors openmpi green-computing
.. toctree:: :maxdepth: 2 :caption: Data storage data-storage backups file-transfers samba
.. toctree:: :maxdepth: 2 :caption: Miscellaneous contact-us monitoring linux-basics tips publications cluster-changes
.. toctree:: :maxdepth: 1 :caption: The legal stuff organizations sla acceptable-use gdpr
Note
Use the Edit on GitHub links to make or suggest changes or additions to this help; new or updated pages are synced every five minutes.