R-CMD-check.yaml

# NOTE: This workflow is overkill for most R packages
# check-standard.yaml is likely a better choice
# usethis::use_github_action("check-standard") will install it.
#
# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
on:
  push:
    branches:
      - main
      - devel
  pull_request:
    branches:
      - main
      - devel

name: R-CMD-check

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: macOS-latest,   r: 'release'}
          - {os: windows-latest, r: 'release'}
          - {os: ubuntu-20.04,   r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest", http-user-agent: "R/4.1.0 (ubuntu-20.04) R (4.1.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" }
          - {os: ubuntu-20.04,   r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
          - {os: ubuntu-20.04,   r: 'oldrel',  rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}

    env:
      RSPM: ${{ matrix.config.rspm }}
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

    steps:
      - uses: actions/checkout@v2

      - uses: r-lib/actions/setup-r@v2
        id: install-r
        with:
          r-version: ${{ matrix.config.r }}
          http-user-agent: ${{ matrix.config.http-user-agent }}

      - uses: r-lib/actions/setup-pandoc@v2
      - uses: r-lib/actions/setup-tinytex@v2
      - run: tlmgr --version
      - run: tlmgr install apa6 threeparttable caption fancyhdr endfloat was multirow threeparttablex environ trimspaces lineno csquotes babel-english grfext

      - name: Install Ghostscript on Linux
        if: runner.os == 'Linux'
        run: sudo DEBIAN_FRONTEND=noninteractive apt-get install --yes ghostscript

      - name: Install Ghostscript on macOS
        if: runner.os == 'macOS'
        run: brew install ghostscript

      - name: Install Ghostscript on Windows
        if: runner.os == 'Windows'
        run: choco install ghostscript --no-progress

      - name: Install pak and query dependencies
        run: |
          cat("::group::Install pak\n")
          options(pak.no_extra_messages = TRUE)
          install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/")

          deps <- pak::pkg_deps(
            "local::."
            , dependencies = list(
              direct = c("Depends", "Imports", "LinkingTo", "Suggests")
              , indirect = c("Depends", "Imports", "LinkingTo")
            )
          )

          saveRDS(deps, ".github/r-depends.rds")
        shell: Rscript {0}

      - name: Get R and OS version
        id: get-version
        run: |
          cat("::set-output name=os-version::", sessionInfo()$running, "\n", sep = "")
          cat("::set-output name=r-version::", R.Version()$version.string, "\n", sep = "")
          cat("::endgroup::\n")
        shell: Rscript {0}

      - name: Restore R package cache
        uses: actions/cache@v2
        with:
          path: |
            ${{ env.R_LIBS_USER }}/*
            !${{ env.R_LIBS_USER }}/pak
          key: ${{ steps.get-version.outputs.os-version }}-${{ steps.get-version.outputs.r-version }}-${{inputs.cache-version }}-${{ hashFiles('.github/r-depends.rds') }}
          restore-keys: ${{ steps.get-version.outputs.os-version }}-${{ steps.get-version.outputs.r-version }}-${{inputs.cache-version }}-

      - name: Install dependencies
        run: |
          cat("::group::Install dependencies\n")
          options(pak.no_extra_messages = TRUE)
          local_deps <- pak::local_dev_deps(dependencies = TRUE)[["ref"]]
          needs <- sprintf("Config/Needs/%s", strsplit("${{ inputs.needs }}", "[[:space:],]+")[[1]])
          needs_deps <- pak::local_dev_deps(dependencies = needs)[["ref"]]
          needs_only_deps <- setdiff(needs_deps, local_deps)
          extra_deps <- c("rcmdcheck", "covr")
          if (Sys.info()[["sysname"]] == "Linux") {
            pak::local_system_requirements(execute = TRUE)
            for (dep in c(needs_only_deps, extra_deps)) {
              pak::pkg_system_requirements(dep, execute = TRUE)
            }
          }
          pak::pkg_install(c(local_deps, needs_only_deps, extra_deps, "sessioninfo"))
          cat("::endgroup::\n")
        shell: Rscript {0}

      - name: Session info
        run: |
          cat("::group::Session info\n")
          options(width = 100)
          pkgs <- installed.packages()[, "Package"]
          sessioninfo::session_info(pkgs, include_base = TRUE)
          cat("::endgroup::\n")
        shell: Rscript {0}

      - name: Don't use tar 1.30 from Rtools35 to store the cache
        shell: bash
        run: |
          if command -v /c/Rtools/bin/tar && /c/Rtools/bin/tar --version | grep -q 'tar (GNU tar) 1.30'
            then echo 'C:/Program Files/Git/usr/bin' >> $GITHUB_PATH
          fi



      - uses: r-lib/actions/check-r-package@v2
        with:
          build_args: '"--compact-vignettes=both"'

      - name: Code Coverage
        env:
          _R_CHECK_CRAN_INCOMING_: false
        run: covr::codecov()
        shell: Rscript {0}

      - name: Show testthat output
        if: always()
        run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
        shell: bash

      - name: Upload check results
        if: failure()
        uses: actions/upload-artifact@main
        with:
          name: ${{ matrix.config.os }}-r${{ matrix.config.r }}-results
          path: check

      - name: Don't use tar from old Rtools to store the cache
        if: ${{ runner.os == 'Windows' && startsWith(steps.install-r.outputs.installed-r-version, '3.6' ) }}
        shell: bash
        run: echo "C:/Program Files/Git/usr/bin" >> $GITHUB_PATH