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not sure if this is a bug or a feature, but PhyloNetworks.readTopology seems not to like negative edge lengths.
input
readTopology("((A:1,B:1):-1,C:2);")
gives output
┌ Warning: one colon read without double in left parenthesis 2, ignored.
└ @ PhyloNetworks ~/.julia/packages/PhyloNetworks/Wtq8B/src/readwrite.jl:270
HybridNetwork, Rooted Network
5 edges
6 nodes: 4 tips, 0 hybrid nodes, 2 internal tree nodes.
tip labels: A, B, 1, C
((A:1.0,B:1.0),1,C:2.0);
and input
readTopology("((A:1,B:-1):1,C:2);")
gives output
┌ Warning: one colon read without double in left parenthesis 2, ignored.
└ @ PhyloNetworks ~/.julia/packages/PhyloNetworks/Wtq8B/src/readwrite.jl:270
ERROR: Expected right parenthesis after left parenthesis 2 but read -. The remainder of line is 1):1,C:2);.
The text was updated successfully, but these errors were encountered:
fogg-uw
changed the title
readTopology with small, negative hybrid branch lengths
readTopology with negative edge lengths
Jun 8, 2022
not sure if this is a bug or a feature, but
PhyloNetworks.readTopology
seems not to like negative edge lengths.input
gives output
and input
gives output
The text was updated successfully, but these errors were encountered: