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@csglab

Computational and Statistical Genomics Lab

The CSG lab is part of the Department of Human Genetics at McGill University, and is located at the McGill University and Génome Québec Innovation Centre.

Popular repositories

  1. REMBRANDTS REMBRANDTS Public

    REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    R 13 11

  2. DiffRAC DiffRAC Public

    A flexible R function for comparing response proportions in sequencing count data

    R 8 1

  3. CRIES CRIES Public

    Counting Reads for Intronic and Exonic Segments

    R 7 1

  4. GEDI GEDI Public

    HTML 6

  5. RCADE2 RCADE2 Public

    Recognition Code-Assisted Discovery of regulatory Elements v2

    C++ 5 1

  6. phantom_purge phantom_purge Public

    Please go to https://github.com/csglab/PhantomPurgeR

    R 3

Repositories

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Showing 10 of 18 repositories
  • GEDI_manuscript Public

    This repository hosts R markdown notebooks reproducing the figures from the GEDI manuscript

    HTML 0 BSD-2-Clause 0 0 0 Updated May 17, 2024
  • GEDI Public
    HTML 6 BSD-2-Clause 0 0 0 Updated May 17, 2024
  • DiffRAC Public

    A flexible R function for comparing response proportions in sequencing count data

    R 8 GPL-3.0 1 0 0 Updated May 13, 2024
  • trex_manuscript Public
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated May 11, 2024
  • REMBRANDTS Public

    REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

    R 13 GPL-3.0 11 7 1 Updated Dec 16, 2023
  • JAMS Public

    Quantitative modeling of sequence, DNA accessibility, and methylation preferences of transcription factors using ChIP-seq data.

    R 2 GPL-3.0 1 0 0 Updated Nov 1, 2023
  • PhantomPurgeR Public

    R package for the optimal purging of phantom molecules by the robust estimation of the sample index hopping rate in multiplexed droplet-based single-cell RNA-seq data

    R 3 BSD-2-Clause 1 0 0 Updated Jul 12, 2023
  • JAMS_novo Public Forked from csglab/JAMS

    Quantitative modeling of sequence, DNA accessibility, and methylation preferences of transcription factors using ChIP-seq data.

    R 0 GPL-3.0 1 0 0 Updated Oct 26, 2022
  • BETAS Public

    Bayesian Estimation of Transcript Abundance and Stability

    C++ 0 GPL-3.0 0 0 0 Updated Sep 19, 2022
  • CRIES Public

    Counting Reads for Intronic and Exonic Segments

    R 7 GPL-3.0 1 2 0 Updated Sep 19, 2022
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