- Minor fixes to adapt to changes in ggplot2
- Add 'Close app' button to close the shiny application and return data
- Support BiocStyle::pdf_document and BiocStyle::html_document output formats (thanks to Mike Smith for insights regarding BiocStyle)
- Allow processing of alevin-fry data with unfiltered permitlist
- Bug fix; use nbr mapped reads to calculate fraction of reads in barcode list for alevin-fry
- Added support for reading alevin-fry output
- Added selected summary distributions to the reports, and a function to plot histograms of arbitrary numeric columns of the cbTable
- Added the possibility of providing custom cell barcode sets
- Added ability to process output from Salmon v0.14 or later
- Preparation for Bioconductor submission
- Initial version