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Exploring genomic diversity in wild and cultivated barley using high throughput DNA sequencing technology

researchrepository.murdoch.edu.au/cgi/stats/report/eprint/41577

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Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
KASP-SnpTag-extract180914.py		KASP-SnpTag-extract180914.py
KASP-primer-extract180914.py		KASP-primer-extract180914.py
Phred-convert.py		Phred-convert.py
README.md		README.md
RNA-Seq.py		RNA-Seq.py
TotalLength.py		TotalLength.py
fa-filter.py		fa-filter.py
fa-merge.py		fa-merge.py
fa-stats.py		fa-stats.py
fa-sub.py		fa-sub.py
fa2pr3.py		fa2pr3.py
fa2pr3kasp.py		fa2pr3kasp.py
fa2sql.py		fa2sql.py
fa_multiple.py		fa_multiple.py
fastqCombinePairedEnd.py		fastqCombinePairedEnd.py
gene-2snp.py		gene-2snp.py
gene-diff-150928.py		gene-diff-150928.py
gene-in-bed-180205.py		gene-in-bed-180205.py
gene-in-bed.py		gene-in-bed.py
gene-in-region.py		gene-in-region.py
gene-name-fa.py		gene-name-fa.py
genes-extract.py		genes-extract.py
genomecov-plot.R		genomecov-plot.R
genotype-compare.py		genotype-compare.py
genotype2sql.py		genotype2sql.py
genotype2vcf.py		genotype2vcf.py
get-chr-pos-150928.py		get-chr-pos-150928.py
get-deletion.py		get-deletion.py
get-fa-150903.py		get-fa-150903.py
get-fa-aa_170406.py		get-fa-aa_170406.py
get-fa-pep.py		get-fa-pep.py
get-fa-pep2.py		get-fa-pep2.py
get-field-150903.py		get-field-150903.py
get-gene-funs-170821.py		get-gene-funs-170821.py
get-gene-pos.py		get-gene-pos.py
get-gene-pos0.py		get-gene-pos0.py
get-go-150903.py		get-go-150903.py
getFa.py		getFa.py
getFaRecord-170516.py		getFaRecord-170516.py
getFaRegion-170515.py		getFaRegion-170515.py
getFaSNP-170530.py		getFaSNP-170530.py
gff2gtf.py		gff2gtf.py
gff2region-151204.py		gff2region-151204.py
gt-compare.r		gt-compare.r
gt-filter.py		gt-filter.py
gt2fre.py		gt2fre.py
heatmap.r		heatmap.r
include-list.py		include-list.py
include-pos.py		include-pos.py
indel-filter.py		indel-filter.py
indel-lib-wbga2016.py		indel-lib-wbga2016.py
line-shell-170905.py		line-shell-170905.py
list_overlap.py		list_overlap.py
log.r		log.r
match-1024.py		match-1024.py
match-gene.py		match-gene.py
matrix2df.r		matrix2df.r
merge_tables.py		merge_tables.py
motif-search.py		motif-search.py
pairwise-distance.r		pairwise-distance.r
parts2chr-170825.py		parts2chr-170825.py
parts2chr-bed.py		parts2chr-bed.py
parts2chr-vcf.py		parts2chr-vcf.py
parts2chr.py		parts2chr.py
pipe-kasp-191001.py		pipe-kasp-191001.py
plot-bar-20160206.r		plot-bar-20160206.r
plot-chr-lib.r		plot-chr-lib.r
plot-chr.r		plot-chr.r
plot-count-20160315.r		plot-count-20160315.r
plot-count-fst.r		plot-count-fst.r
plot-count-snp.r		plot-count-snp.r
plot-count.r		plot-count.r
plot-density-20160203.r		plot-density-20160203.r
plot-density-20160315.r		plot-density-20160315.r
plot-distribution-20160203.R		plot-distribution-20160203.R
plot-fst-zone3.r		plot-fst-zone3.r
plot-fst.r		plot-fst.r
plot-gene.r		plot-gene.r
plot-genotype-compare.r		plot-genotype-compare.r
plot-heatmap.r		plot-heatmap.r
plot-scatterplot-20160205.r		plot-scatterplot-20160205.r
prepDE3.4.py		prepDE3.4.py
primer3-kasp-170628.py		primer3-kasp-170628.py
primer3-kasp-170629.py		primer3-kasp-170629.py
primer3extract.py		primer3extract.py
produce_pepr_gtf_170406.py		produce_pepr_gtf_170406.py
python1.py		python1.py
reads-group.py		reads-group.py
rename-fa.py		rename-fa.py
rename-gene.py		rename-gene.py
rg2align-150903.py		rg2align-150903.py
rg2merge-150928.py		rg2merge-150928.py
rg2speedseq-align.py		rg2speedseq-align.py
rna-align.py		rna-align.py
run-python.py		run-python.py
s.py		s.py
sample-diff.py		sample-diff.py
sample-gt-diff.py		sample-gt-diff.py
sample-rg-150903.py		sample-rg-150903.py
search-1013.py		search-1013.py