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R-CMD-check.yaml
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# NOTE: This workflow is overkill for most R packages
# check-standard.yaml is likely a better choice
# usethis::use_github_action("check-standard") will install it.
#
# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
on:
push:
branches:
- main
- master
- "r-*"
pull_request:
branches:
- main
- master
- "r-*"
schedule:
- cron: '10 0 * * *'
name: rcc
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}${{ matrix.config.os-version }}
name: ${{ matrix.config.os }}${{ matrix.config.os-version }} (${{ matrix.config.r }}) ${{ matrix.config.desc }}
# Begin custom: services
# End custom: services
strategy:
fail-fast: false
# Ensure that the "cancel" workflow gets a chance to run quickly, even if we just pushed
# Need to figure out how to smoke-test
max-parallel: 5
matrix:
config:
- { os: macOS-latest, r: 'release' }
- { os: windows-latest, r: 'release', rspm: "https://packagemanager.rstudio.com/all/latest" }
- { os: windows-latest, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/all/latest" }
- { os: ubuntu-, os-version: 20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" }
- { os: ubuntu-, os-version: 18.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest" }
- { os: ubuntu-, os-version: 18.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest", http-user-agent: "R/4.0.0 (ubuntu-18.04) R (4.0.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" }
- { os: ubuntu-, os-version: 18.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest" }
# Begin custom: R 3.5
# End custom: R 3.5
# Begin custom: R 3.4
# End custom: R 3.4
# Begin custom: R 3.3
# End custom: R 3.3
# Begin custom: matrix elements
# End custom: matrix elements
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
# prevent rgl issues because no X11 display is available
RGL_USE_NULL: true
# Begin custom: env vars
# End custom: env vars
steps:
- name: Check rate limits
run: |
curl -s --header "authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" https://api.github.com/rate_limit
shell: bash
- uses: actions/checkout@v2
# Begin custom: before install
# End custom: before install
- uses: r-lib/actions/setup-r@v1
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
- uses: r-lib/actions/setup-pandoc@v1
- name: Install remotes
run: |
if (!requireNamespace("curl", quietly = TRUE)) install.packages("curl")
if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes")
shell: Rscript {0}
- name: Query dependencies
if: runner.os != 'Windows'
run: |
saveRDS(remotes::dev_package_deps(dependencies = TRUE, type = .Platform$pkgType), ".github/depends.Rds", version = 2)
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
shell: Rscript {0}
- name: Restore R package cache
if: runner.os != 'Windows'
uses: actions/cache@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ matrix.config.os }}${{ matrix.config.os-version }}-${{ hashFiles('.github/R-version') }}-2-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ matrix.config.os }}${{ matrix.config.os-version }}-${{ hashFiles('.github/R-version') }}-2-
- name: Install system dependencies
if: runner.os == 'Linux'
run: |
sudo apt-get update -y
while read -r cmd
do
eval sudo $cmd
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "${{matrix.config.os-version}}"))')
- name: Add fake qpdf and checkbashisms
if: runner.os == 'Linux'
run: |
sudo ln -s $(which true) /usr/local/bin/qpdf
sudo ln -s $(which true) /usr/local/bin/checkbashisms
- name: Install dependencies
run: |
remotes::install_deps(dependencies = TRUE, type = .Platform$pkgType)
remotes::install_cran("rcmdcheck")
shell: Rscript {0}
- name: Session info
run: |
options(width = 100)
if (!requireNamespace("sessioninfo", quietly = TRUE)) install.packages("sessioninfo")
pkgs <- installed.packages()[, "Package"]
sessioninfo::session_info(pkgs, include_base = TRUE)
shell: Rscript {0}
# Begin custom: after install
- name: Check template
env:
_R_CHECK_CRAN_INCOMING_: false
_R_CHECK_SYSTEM_CLOCK_: false
_R_CHECK_FUTURE_FILE_TIMESTAMPS_: false
run: |
options(crayon.enabled = TRUE)
error_on <- "note"
rcmdcheck::rcmdcheck("inst/mypackage", args = c("--no-manual", "--as-cran"), error_on = "note", check_dir = "inst/mypackage/check")
shell: Rscript {0}
# End custom: after install
- name: Check
env:
_R_CHECK_CRAN_INCOMING_: false
_R_CHECK_SYSTEM_CLOCK_: false
_R_CHECK_FUTURE_FILE_TIMESTAMPS_: false
run: |
options(crayon.enabled = TRUE)
error_on <- "note"
# Begin custom: rcmdcheck error_on
# End custom: rcmdcheck error_on
rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = error_on, check_dir = "check")
shell: Rscript {0}
- name: Show test output
if: always()
run: |
find check -name '*.Rout*' -exec head -n 1000000 '{}' \; || true
shell: bash
- name: Upload check results
if: failure()
uses: actions/upload-artifact@main
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check
- name: Check rate limits
if: always()
run: |
curl -s --header "authorization: Bearer ${{ secrets.GITHUB_TOKEN }}" https://api.github.com/rate_limit
shell: bash