Annotate.py

# Note: Work in progress


import os
import os.path
import re
import codecs
import textwrap
from datetime import datetime
from functools import partial
from collections import defaultdict
from xml.sax.saxutils import escape as html_escape
from io import StringIO

from . import Version
from .Code import CCodeWriter
from .. import Utils


class AnnotationCCodeWriter(CCodeWriter):

    # also used as marker for detection of complete code emission in tests
    COMPLETE_CODE_TITLE = "Complete cythonized code"

    def __init__(self, create_from=None, buffer=None, copy_formatting=True, show_entire_c_code=False, source_desc=None):
        CCodeWriter.__init__(self, create_from, buffer, copy_formatting=copy_formatting)
        self.show_entire_c_code = show_entire_c_code
        if create_from is None:
            self.annotation_buffer = StringIO()
            self.last_annotated_pos = None
            # annotations[filename][line] -> [(column, AnnotationItem)*]
            self.annotations = defaultdict(partial(defaultdict, list))
            # code[filename][line] -> str
            self.code = defaultdict(partial(defaultdict, str))
            # scopes[filename][line] -> set(scopes)
            self.scopes = defaultdict(partial(defaultdict, set))
        else:
            # When creating an insertion point, keep references to the same database
            self.annotation_buffer = create_from.annotation_buffer
            self.annotations = create_from.annotations
            self.code = create_from.code
            self.scopes = create_from.scopes
            self.last_annotated_pos = create_from.last_annotated_pos

    def create_new(self, create_from, buffer, copy_formatting):
        return AnnotationCCodeWriter(create_from, buffer, copy_formatting)

    def _write_to_buffer(self, s):
        self.buffer.write(s)
        self.annotation_buffer.write(s)

    def mark_pos(self, pos, trace=True):
        if pos is not None:
            CCodeWriter.mark_pos(self, pos, trace)
            if self.funcstate and self.funcstate.scope:
                # lambdas and genexprs can result in multiple scopes per line => keep them in a set
                self.scopes[pos[0].filename][pos[1]].add(self.funcstate.scope)
        if self.last_annotated_pos:
            source_desc, line, _ = self.last_annotated_pos
            pos_code = self.code[source_desc.filename]
            pos_code[line] += self.annotation_buffer.getvalue()
        self.annotation_buffer = StringIO()
        self.last_annotated_pos = pos

    def annotate(self, pos, item):
        self.annotations[pos[0].filename][pos[1]].append((pos[2], item))

    def _css(self):
        """css template will later allow to choose a colormap"""
        css = [self._css_template]
        for i in range(255):
            color = "FFFF%02x" % int(255.0 // (1.0 + i/10.0))
            css.append('.cython.score-%d {background-color: #%s;}' % (i, color))
        try:
            from pygments.formatters import HtmlFormatter
        except ImportError:
            pass
        else:
            css.append(HtmlFormatter().get_style_defs('.cython'))
        return '\n'.join(css)

    _css_template = textwrap.dedent("""
        body.cython { font-family: courier; font-size: 12; }

        .cython.tag  {  }
        .cython.line { color: #000000; margin: 0em }
        .cython.code { font-size: 9; color: #444444; display: none; margin: 0px 0px 0px 8px; border-left: 8px none; }

        .cython.line .run { background-color: #B0FFB0; }
        .cython.line .mis { background-color: #FFB0B0; }
        .cython.code.run  { border-left: 8px solid #B0FFB0; }
        .cython.code.mis  { border-left: 8px solid #FFB0B0; }

        .cython.code .py_c_api  { color: red; }
        .cython.code .py_macro_api  { color: #FF7000; }
        .cython.code .pyx_c_api  { color: #FF3000; }
        .cython.code .pyx_macro_api  { color: #FF7000; }
        .cython.code .refnanny  { color: #FFA000; }
        .cython.code .trace  { color: #FFA000; }
        .cython.code .error_goto  { color: #FFA000; }

        .cython.code .coerce  { color: #008000; border: 1px dotted #008000 }
        .cython.code .py_attr { color: #FF0000; font-weight: bold; }
        .cython.code .c_attr  { color: #0000FF; }
        .cython.code .py_call { color: #FF0000; font-weight: bold; }
        .cython.code .c_call  { color: #0000FF; }
    """)

    # on-click toggle function to show/hide C source code
    _onclick_attr = ' onclick="{}"'.format((
        "(function(s){"
        "    s.display =  s.display === 'block' ? 'none' : 'block'"
        "})(this.nextElementSibling.style)"
        ).replace(' ', '')  # poor dev's JS minification
    )

    def save_annotation(self, source_filename, target_filename, coverage_xml=None):
        with Utils.open_source_file(source_filename) as f:
            code = f.read()
        generated_code = self.code.get(source_filename, {})
        c_file = Utils.decode_filename(os.path.basename(target_filename))
        html_filename = os.path.splitext(target_filename)[0] + ".html"

        with codecs.open(html_filename, "w", encoding="UTF-8") as out_buffer:
            out_buffer.write(self._save_annotation(code, generated_code, c_file, source_filename, coverage_xml))

    def _save_annotation_header(self, c_file, source_filename, coverage_timestamp=None):
        coverage_info = ''
        if coverage_timestamp:
            coverage_info = ' with coverage data from {timestamp}'.format(
                timestamp=datetime.fromtimestamp(int(coverage_timestamp) // 1000))

        outlist = [
            textwrap.dedent('''\
            <!DOCTYPE html>
            <!-- Generated by Cython {watermark} -->
            <html>
            <head>
                <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
                <title>Cython: {filename}</title>
                <style type="text/css">
                {css}
                </style>
            </head>
            <body class="cython">
            <p><span style="border-bottom: solid 1px grey;">Generated by Cython {watermark}</span>{more_info}</p>
            <p>
                <span style="background-color: #FFFF00">Yellow lines</span> hint at Python interaction.<br />
                Click on a line that starts with a "<code>+</code>" to see the C code that Cython generated for it.
            </p>
            ''').format(css=self._css(), watermark=Version.watermark,
                        filename=os.path.basename(source_filename) if source_filename else '',
                        more_info=coverage_info)
        ]
        if c_file:
            outlist.append('<p>Raw output: <a href="%s">%s</a></p>\n' % (c_file, c_file))
        return outlist

    def _save_annotation_footer(self):
        return ('</body></html>\n',)

    def _save_annotation(self, code, generated_code, c_file=None, source_filename=None, coverage_xml=None):
        """
        lines : original cython source code split by lines
        generated_code : generated c code keyed by line number in original file
        target filename : name of the file in which to store the generated html
        c_file : filename in which the c_code has been written
        """
        if coverage_xml is not None and source_filename:
            coverage_timestamp = coverage_xml.get('timestamp', '').strip()
            covered_lines = self._get_line_coverage(coverage_xml, source_filename)
        else:
            coverage_timestamp = covered_lines = None
        annotation_items = dict(self.annotations[source_filename])
        scopes = dict(self.scopes[source_filename])

        outlist = []
        outlist.extend(self._save_annotation_header(c_file, source_filename, coverage_timestamp))
        outlist.extend(self._save_annotation_body(code, generated_code, annotation_items, scopes, covered_lines))
        outlist.extend(self._save_annotation_footer())
        return ''.join(outlist)

    def _get_line_coverage(self, coverage_xml, source_filename):
        coverage_data = None
        for entry in coverage_xml.iterfind('.//class'):
            if not entry.get('filename'):
                continue
            if (entry.get('filename') == source_filename or
                    os.path.abspath(entry.get('filename')) == source_filename):
                coverage_data = entry
                break
            elif source_filename.endswith(entry.get('filename')):
                coverage_data = entry  # but we might still find a better match...
        if coverage_data is None:
            return None
        return {
            int(line.get('number')): int(line.get('hits'))
            for line in coverage_data.iterfind('lines/line')
        }

    def _htmlify_code(self, code, language):
        try:
            from pygments import highlight
            from pygments.lexers import CythonLexer, CppLexer
            from pygments.formatters import HtmlFormatter
        except ImportError:
            # no Pygments, just escape the code
            return html_escape(code)

        if language == "cython":
            lexer = CythonLexer(stripnl=False, stripall=False)
        elif language == "c/cpp":
            lexer = CppLexer(stripnl=False, stripall=False)
        else:
            # unknown language, use fallback
            return html_escape(code)
        html_code = highlight(
            code, lexer,
            HtmlFormatter(nowrap=True))
        return html_code

    def _save_annotation_body(self, cython_code, generated_code, annotation_items, scopes, covered_lines=None):
        outlist = ['<div class="cython">']
        pos_comment_marker = '/* \N{HORIZONTAL ELLIPSIS} */\n'
        new_calls_map = {
            name: 0 for name in
            'refnanny trace py_macro_api py_c_api pyx_macro_api pyx_c_api error_goto'.split()
        }.copy

        self.mark_pos(None)

        def annotate(match):
            group_name = match.lastgroup
            calls[group_name] += 1
            return "<span class='%s'>%s</span>" % (
                group_name, match.group(group_name))

        lines = self._htmlify_code(cython_code, "cython").splitlines()
        lineno_width = len(str(len(lines)))
        if not covered_lines:
            covered_lines = None

        for k, line in enumerate(lines, 1):
            try:
                c_code = generated_code[k]
            except KeyError:
                c_code = ''
            else:
                c_code = _replace_pos_comment(pos_comment_marker, c_code)
                if c_code.startswith(pos_comment_marker):
                    c_code = c_code[len(pos_comment_marker):]
                c_code = html_escape(c_code)

            calls = new_calls_map()
            c_code = _parse_code(annotate, c_code)
            score = (5 * calls['py_c_api'] + 2 * calls['pyx_c_api'] +
                     calls['py_macro_api'] + calls['pyx_macro_api'])

            if c_code:
                onclick = self._onclick_attr
                expandsymbol = '+'
            else:
                onclick = ''
                expandsymbol = '&#xA0;'

            covered = ''
            if covered_lines is not None and k in covered_lines:
                hits = covered_lines[k]
                if hits is not None:
                    covered = 'run' if hits else 'mis'

            outlist.append(
                '<pre class="cython line score-{score}"{onclick}>'
                # generate line number with expand symbol in front,
                # and the right  number of digit
                '{expandsymbol}<span class="{covered}">{line:0{lineno_width}d}</span>: {code}</pre>\n'.format(
                    score=score,
                    expandsymbol=expandsymbol,
                    covered=covered,
                    lineno_width=lineno_width,
                    line=k,
                    code=line.rstrip(),
                    onclick=onclick,
                ))
            if c_code:
                outlist.append("<pre class='cython code score-{score} {covered}'>{code}</pre>".format(
                    score=score, covered=covered, code=c_code))
        outlist.append("</div>")

        # now the whole c-code if needed:
        if self.show_entire_c_code:
            outlist.append('<p><div class="cython">')
            onclick_title = "<pre class='cython line'{onclick}>+ {title}</pre>\n"
            outlist.append(onclick_title.format(
                              onclick=self._onclick_attr,
                              title=AnnotationCCodeWriter.COMPLETE_CODE_TITLE,
                           ))
            complete_code_as_html = self._htmlify_code(self.buffer.getvalue(), "c/cpp")
            outlist.append("<pre class='cython code'>{code}</pre>".format(code=complete_code_as_html))
            outlist.append("</div></p>")

        return outlist


_parse_code = re.compile((
    br'(?P<refnanny>__Pyx_X?(?:GOT|GIVE)REF|__Pyx_RefNanny[A-Za-z]+)|'
    br'(?P<trace>__Pyx_Trace[A-Za-z]+)|'
    br'(?:'
    br'(?P<pyx_macro_api>__Pyx_[A-Z][A-Z_]+)|'
    br'(?P<pyx_c_api>(?:__Pyx_[A-Z][a-z_][A-Za-z_]*)|__pyx_convert_[A-Za-z_]*)|'
    br'(?P<py_macro_api>Py[A-Z][a-z]+_[A-Z][A-Z_]+)|'
    br'(?P<py_c_api>Py[A-Z][a-z]+_[A-Z][a-z][A-Za-z_]*)'
    br')(?=\()|'       # look-ahead to exclude subsequent '(' from replacement
    br'(?P<error_goto>(?:(?<=;) *if [^;]* +)?__PYX_ERR\([^)]+\))'
).decode('ascii')).sub


_replace_pos_comment = re.compile(
    # this matches what Cython generates as code line marker comment
    br'^\s*/\*(?:(?:[^*]|\*[^/])*\n)+\s*\*/\s*\n'.decode('ascii'),
    re.M
).sub


class AnnotationItem:

    def __init__(self, style, text, tag="", size=0):
        self.style = style
        self.text = text
        self.tag = tag
        self.size = size

    def start(self):
        return "<span class='cython tag %s' title='%s'>%s" % (self.style, self.text, self.tag)

    def end(self):
        return self.size, "</span>"