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Ventana tif upload failure #1066

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rmaree opened this issue Sep 26, 2014 · 1 comment
Closed

Ventana tif upload failure #1066

rmaree opened this issue Sep 26, 2014 · 1 comment
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bug Cytomine Server

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@rmaree
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rmaree commented Sep 26, 2014

Client upload log:

Upload sept2014/P31-10GH071424-A4_CD3_201404021444.tif on http://beta.cytomine.be in project 92279388 and storage 17763541
try...
publicKey=62d9ac0a-2dc6-40ef-8583-f09b7448e8d8
privateKey=532f6a36-3ebe-4c54-9e31-bdf8c71a821d
messageToSign=POST

multipart/form-data; boundary=73v6x6zwQckNGgYkF0p6XoODicAGWYL3JGraPTbE
Fri, 26 Sep 2014 10:22:09 +0000
/upload?idStorage=17763541&cytomine=http://beta.cytomine.be&idProject=92279388&sync=true
signature=zFN0bXRyO2FaOhsa/Djct1poAhc=
authorization=CYTOMINE 62d9ac0a-2dc6-40ef-8583-f09b7448e8d8:zFN0bXRyO2FaOhsa/Djct1poAhc=
response=java.lang.NullPointerException
Caught: java.lang.Error: Lexical Error: Unmatched Input.
java.lang.Error: Lexical Error: Unmatched Input.
        at org.json.simple.parser.Yylex.yylex(Yylex.java:295)
        at org.json.simple.parser.JSONParser.parse(JSONParser.java:41)
        at org.json.simple.JSONValue.parse(JSONValue.java:25)
        at org.json.simple.JSONValue.parse(JSONValue.java:34)
        at be.cytomine.client.Cytomine.createJSONArrayResponse(Cytomine.java:166)
        at be.cytomine.client.Cytomine.uploadImage(Cytomine.java:1560)
        at be.cytomine.client.Cytomine$uploadImage.call(Unknown Source)
        at uploadBig2$_run_closure1.doCall(uploadBig2.groovy:248)
        at uploadBig2.run(uploadBig2.groovy:241)

Image Server log:

createImage [uploadedFilePath:/data/beta.cytomine.be/14/1411719958801/278b314d-8af8-408e-9e8a-e57adda95a37.vtif, imageFormat:null, parent:[uploadedFilePath:/data/beta.cytomine.be/14/1411719958801/P31-10GH071424-A4_\
CD3_201404021444.tif, imageFormat:be.cytomine.formats.digitalpathology.VentanaTIFFFormat@28382b7f]]
2014-09-26 10:26:11,566 [http-bio-9080-exec-1877] ERROR storage.StorageController  - java.lang.NullPointerException
java.lang.NullPointerException
        at org.codehaus.groovy.runtime.callsite.PogoGetPropertySite.acceptGroovyObjectGetProperty(PogoGetPropertySite.java:39)
        at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callGroovyObjectGetProperty(AbstractCallSite.java:231)
        at be.cytomine.storage.StorageController.createImage(StorageController.groovy:201)
        at be.cytomine.storage.StorageController.this$2$createImage(StorageController.groovy)
        at sun.reflect.GeneratedMethodAccessor508.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:601)
        at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:90)
        at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:324)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1207)
        at groovy.lang.ExpandoMetaClass.invokeMethod(ExpandoMetaClass.java:1110)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1016)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1152)
        at groovy.lang.ExpandoMetaClass.invokeMethod(ExpandoMetaClass.java:1110)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1016)
        at org.codehaus.groovy.runtime.callsite.PogoMetaClassSite.callCurrent(PogoMetaClassSite.java:66)
        at be.cytomine.storage.StorageController$_upload_closure2.doCall(StorageController.groovy:145)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:601)
        at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:90)
        at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:324)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1207)
        at groovy.lang.ExpandoMetaClass.invokeMethod(ExpandoMetaClass.java:1110)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1016)
        at groovy.lang.Closure.call(Closure.java:423)
        at groovy.lang.Closure.call(Closure.java:439)
        at org.codehaus.groovy.runtime.DefaultGroovyMethods.each(DefaultGroovyMethods.java:1379)
        at org.codehaus.groovy.runtime.DefaultGroovyMethods.each(DefaultGroovyMethods.java:1372)
        at org.codehaus.groovy.runtime.dgm$149.invoke(Unknown Source)
        at org.codehaus.groovy.runtime.callsite.PojoMetaMethodSite$PojoMetaMethodSiteNoUnwrapNoCoerce.invoke(PojoMetaMethodSite.java:271)
        at org.codehaus.groovy.runtime.callsite.PojoMetaMethodSite.call(PojoMetaMethodSite.java:53)
        at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:116)
        at be.cytomine.storage.StorageController.upload(StorageController.groovy:144)
        at sun.reflect.GeneratedMethodAccessor497.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:601)
        at org.codehaus.groovy.grails.web.servlet.mvc.MixedGrailsControllerHelper.invoke(MixedGrailsControllerHelper.java:154)
        at org.codehaus.groovy.grails.web.servlet.mvc.AbstractGrailsControllerHelper.handleAction(AbstractGrailsControllerHelper.java:375)
        at org.codehaus.groovy.grails.web.servlet.mvc.AbstractGrailsControllerHelper.executeAction(AbstractGrailsControllerHelper.java:252)
        at org.codehaus.groovy.grails.web.servlet.mvc.AbstractGrailsControllerHelper.handleURI(AbstractGrailsControllerHelper.java:205)
        at org.codehaus.groovy.grails.web.servlet.mvc.AbstractGrailsControllerHelper.handleURI(AbstractGrailsControllerHelper.java:126)
 at org.codehaus.groovy.grails.web.servlet.mvc.AbstractGrailsControllerHelper.handleURI(AbstractGrailsControllerHelper.java:126)
        at org.codehaus.groovy.grails.web.servlet.mvc.SimpleGrailsController.handleRequest(SimpleGrailsController.java:72)
        at org.springframework.web.servlet.mvc.SimpleControllerHandlerAdapter.handle(SimpleControllerHandlerAdapter.java:50)
        at org.codehaus.groovy.grails.web.servlet.GrailsDispatcherServlet.doDispatch(GrailsDispatcherServlet.java:347)
        at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:870)
        at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:961)
        at org.springframework.web.servlet.FrameworkServlet.doPost(FrameworkServlet.java:863)
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:641)
        at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:837)
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:722)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
        at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:101)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
        at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:101)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
        at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:101)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
        at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:684)
        at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:471)
        at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:402)
        at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:329)
        at org.codehaus.groovy.grails.web.mapping.UrlMappingUtils.forwardRequestForUrlMappingInfo(UrlMappingUtils.java:178)
 at org.codehaus.groovy.grails.web.mapping.UrlMappingUtils.forwardRequestForUrlMappingInfo(UrlMappingUtils.java:135)
        at org.codehaus.groovy.grails.web.mapping.filter.UrlMappingsFilter.doFilterInternal(UrlMappingsFilter.java:216)
        at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
        at org.codehaus.groovy.grails.web.servlet.mvc.GrailsWebRequestFilter.doFilterInternal(GrailsWebRequestFilter.java:69)
        at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
        at org.codehaus.groovy.grails.web.filters.HiddenHttpMethodFilter.doFilterInternal(HiddenHttpMethodFilter.java:67)
        at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
        at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
        at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
        at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:344)
        at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:261)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
        at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:224)
        at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:169)
        at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:168)
        at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:98)
        at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:927)

at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:407)
        at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:987)
        at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:579)
        at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:307)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
        at java.lang.Thread.run(Thread.java:722)
@stevben
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stevben commented Oct 2, 2014

Yo.

Il faudrait rententer et regarder les logs côte CORE car c'est las bas qu'il est pas content.

2014-09-26 10:26:11,566 [http-bio-9080-exec-1877] ERROR storage.StorageController - java.lang.NullPointerException
java.lang.NullPointerException
at org.codehaus.groovy.runtime.callsite.PogoGetPropertySite.acceptGroovyObjectGetProperty(PogoGetPropertySite.java:39)
at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callGroovyObjectGetProperty(AbstractCallSite.java:231)
at be.cytomine.storage.StorageController.createImage(StorageController.groovy:201)

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@stevben @rmaree @geektortoise