Based on the Rocker-Project.org Docker RStudio verse container for CyVerse Discovery Environment (DE) data science workbench. CyVerse DE requires additional configuration files (e.g. nginx) to be compatible with Kubernetes orchestration.
An Introduction to Rocker: Docker Containers for R Carl Boettiger and Dirk Eddelbuettel, The R Journal (2017) 9:2, pages 527-536. https://doi.org/10.32614/RJ-2017-065
The RockerVerse Daniel Nüst, Dirk Eddelbuettel, Dom Bennett, Robrecht Cannoodt, Dav Clark, Gergely Daróczi, Mark Edmondson, Colin Fay, Ellis Hughes, Lars Kjeldgaard, Sean Lopp, Ben Marwick, Heather Nolis, Jacqueline Nolis, Hong Ooi, Karthik Ram, Noam Ross, Lori Shepherd, Péter Sólymos, Tyson Lee Swetnam, Nitesh Turaga, Charlotte Van Petegem, Jason Williams, Craig Willis and Nan Xiao , The R Journal (2020) 12:1, pages 437-461. https://doi.org/10.32614/RJ-2020-007
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To run these containers, you must first pull them from DockerHub
docker pull harbor.cyverse.org/vice/rstudio/verse:latest
docker run -it --rm -p 8787:80 -e REDIRECT_URL=http://localhost:8787 harbor.cyverse.org/vice/rstudio/verse:latest
The default username is rstudio and password is rstudio1. To reset the password, add the flag -e PASSWORD=<yourpassword> in the docker run statement.
This container is intended to run on the CyVerse data science workbench, called VICE.
Unless you plan on making changes to this container, you should use the existing launch button above.
To build your own container with a Dockerfile and additional dependencies, pull the pre-built image from CyVerse private/public Harbor Registry.
FROM harbor.cyverse.org/vice/rstudio/verse:latest
Follow the instructions in the VICE manual for integrating your own tools and apps.
Developer notes
Maintainance update: 8/12/2022