This repository has been archived by the owner on Mar 17, 2023. It is now read-only.
add -L option to raise cutoff to allow indel calling #81
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
|
Sorry I completely missed that I should review this PR! |
|
No worries at all!! It's a very simple fix, just wanted to make sure you're aware of the change :) Thanks Aaron!! |
Sign up for free
to subscribe to this conversation on GitHub.
Already have an account?
Sign in.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
nextflow run . -profile test,docker).Added
-L 1000000to enable INDEL calling in vcf generation (see issue here). Tested with seq69/70 data and tests in github actions.