install failed

[sbs87]

I tried using easy_install and pip to install, but received error messages after the "creating build/temp.macosx-10.5-x86_64-2.7/src" step. I've included a partial list of them below:

gcc -fno-strict-aliasing -fno-common -dynamic -arch x86_64 -isysroot /Developer/SDKs/MacOSX10.5.sdk -DNDEBUG -g -O3 -arch x86_64 -isysroot /Developer/SDKs/MacOSX10.5.sdk -Isrc/ -I/Library/Frameworks/EPD64.framework/Versions/7.3/include/python2.7 -c pybedtools/cbedtools.cpp -o build/temp.macosx-10.5-x86_64-2.7/pybedtools/cbedtools.o

In file included from /Developer/SDKs/MacOSX10.5.sdk/usr/include/c++/4.2.1/vector:66,

             from pybedtools/cbedtools.cpp:253:

/Developer/SDKs/MacOSX10.5.sdk/usr/include/c++/4.2.1/bits/stl_algobase.h:64:28: error: bits/c++config.h: No such file or directory

In file included from /Developer/SDKs/MacOSX10.5.sdk/usr/include/c++/4.2.1/bits/stl_algobase.h:69,

             from /Developer/SDKs/MacOSX10.5.sdk/usr/include/c++/4.2.1/vector:66,

             from pybedtools/cbedtools.cpp:253:

I used sudo and double checked that the files/directories it's complaining about do indeed exist (which they do). I am running Mac OS.10.8...

[daler]

You mentioned you're running OSX 10.8, but the paths in the error messages refer to OSX10.5. Was this system upgraded from 10.5 to 10.8? You may need to uninstall the current Xcode and install the one for your current OS.

If this doesn't work, can you provide the entire error message as one big block? It will make it easier to troubleshoot that way.

Also: are you able to compile other code (like BEDTools) successfully?