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Bug Fix

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danfdeblasio committed Mar 2, 2016
1 parent 16c778e commit dc21f26a2e22a8edb120d7f09c3a3b2244939593
Showing with 5 additions and 1 deletion.
  1. +5 −1 opal/realignment/realignmentDriver.java
@@ -148,7 +148,11 @@ private float evaluateWindow(int startIndex, int endIndex){
originalWindowSequences[i][j-startIndex] = Character.toUpperCase(sequence[i][j]);;
}
if(numberOfNonGaps[i] > 0) numberOfNonBlankSequences++;
realignmentIndexes += "("+stringStartChar+","+stringEndChar+");";
if(stringStartChar<stringEndChar){
realignmentIndexes += "("+stringStartChar+","+(stringEndChar-1)+");";
}else{
realignmentIndexes += "(--,--);";
}
}
char[][] windowSequences = new char[numberOfNonBlankSequences][];

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