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  1. use pyGTF.py as script to Convert of Gene annotation format

Usage: python pyGTF.py --input --infmt --output --outfmt

  • gtf2bed

    gtf2bed

  • refseq_gff2genePred

    refseq_gff2genePred

  • genePred2gtf

    genePred2gtf

  1. use pyGTF.py as script to Extract Feature sequence

    Usage: python pyGTF --input --infmt --Genome --Feature --Sequence

    • Extract coding sequence

    • Extract untranslated region sequence

  2. use pyGTF.py as module

    • GTF_Reader

    • safe mode of GTF_Reader

    • Fasta_Reader