/
ch07-dimer-stoch.xml
63 lines (63 loc) · 2.2 KB
/
ch07-dimer-stoch.xml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" level="3" version="1">
<model id="DimerKineticsStoch" name="Dimerisation Kinetics (stochastic)" substanceUnits="item" timeUnits="second" volumeUnits="litre" extentUnits="item">
<listOfCompartments>
<compartment id="Cell" size="1e-15"/>
</listOfCompartments>
<listOfSpecies>
<species id="P" compartment="Cell" initialAmount="301" hasOnlySubstanceUnits="true"/>
<species id="P2" compartment="Cell" initialAmount="0" hasOnlySubstanceUnits="true"/>
</listOfSpecies>
<listOfReactions>
<reaction id="Dimerisation" reversible="false">
<listOfReactants>
<speciesReference species="P" stoichiometry="2"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="P2" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> c1 </ci>
<ci> P </ci>
<apply>
<minus/>
<ci> P </ci>
<cn type="integer"> 1 </cn>
</apply>
</apply>
<cn type="integer"> 2 </cn>
</apply>
</math>
<listOfLocalParameters>
<localParameter id="c1" value="0.00166"/>
</listOfLocalParameters>
</kineticLaw>
</reaction>
<reaction id="Dissociation" reversible="false">
<listOfReactants>
<speciesReference species="P2" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="P" stoichiometry="2"/>
</listOfProducts>
<kineticLaw>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<times/>
<ci> c2 </ci>
<ci> P2 </ci>
</apply>
</math>
<listOfLocalParameters>
<localParameter id="c2" value="0.2"/>
</listOfLocalParameters>
</kineticLaw>
</reaction>
</listOfReactions>
</model>
</sbml>