blank_main_config.ini

[System]
gpu_id=  #
inputs_folder=  #
output_folder=  # Destination folder where the results will be saved
model_folder=  # Folder path containing the model to use

[Runtime]
non_overlapping=
reconstruction_method=  # thresholding, probabilities
reconstruction_order=  # resample_first, resample_second
use_preprocessed_data=  # True, False
test_time_augmentation_iteration=  # Integer specifying the amount of inferences with data augmentation to run in addition
test_time_augmentation_fusion_mode=  # String specifying the method for fusing the augmented predictions. To sample from [mean, max]

[Neuro]
brain_segmentation_filename=  # Filepath pointing to an existing brain mask for the input patient

[Mediastinum]
lungs_segmentation_filename=  # Filepath pointing to an existing lungs mask for the input patient