Extension has problems with python dependencies

[bpaniagua]

Hi @lopezmt @juanprietob

I installed manually sklearn and scipy for the SVA extension downloaded from the extension manager in Ubuntu 16.04. The extension fails to install some python libraries.

Here is the message:
Traceback (most recent call last):
File "", line 1, in
File "/home/bpaniagua/.config/NA-MIC/Extensions-27534/ShapeVariationAnalyzer/lib/Slicer-4.11/qt-scripted-modules/ShapeVariationAnalyzer.py", line 24, in
import shapepcalib as shapca

Could you please look into that?
Thanks,
Bea

[juanprietob]

This commit solves the issue of including the library shapepca
004014a

[bpaniagua]

Thank you for this quick fix. The module now works and loads. There is a remaining error message when Slicer starts:
"RuntimeError: qSlicerScriptedLoadableModule::setPythonSource - Failed to load scripted loadable module: class shapepcalib was not found in file /home/bpaniagua/.config/NA-MIC/Extensions-27539/ShapeVariationAnalyzer/lib/Slicer-4.11/qt-scripted-modules/shapepcalib.py"

Here is how I try to use SVA:

1. Download latest Slicer nightly (in this case the one compiled on 11-11-2018)
2. Manually install sklearn and scipy via ./Slicer --launch bin/python-real -m pip install scikit-learn
   That command works (Successfully installed scikit-learn-0.20.0 scipy-1.1.0)

[lopezmt]

The issue is solved, I have created a pull request to apply the modifications. Le lun. 12 nov. 2018 à 16:44, Beatriz Paniagua <notifications@github.com> a écrit :

…

Thank you for this quick fix. The module now works and loads. There is a remaining error message when Slicer starts: "RuntimeError: qSlicerScriptedLoadableModule::setPythonSource - Failed to load scripted loadable module: class shapepcalib was not found in file /home/bpaniagua/.config/NA-MIC/Extensions-27539/ShapeVariationAnalyzer/lib/Slicer-4.11/qt-scripted-modules/shapepcalib.py" Here is how I try to use SVA: 1. Download latest Slicer nightly (in this case the one compiled on 11-11-2018) 2. Manually install sklearn and scipy via ./Slicer --launch bin/python-real -m pip install scikit-learn That command works (Successfully installed scikit-learn-0.20.0 scipy-1.1.0) — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#28 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Am-lmbG2USYszmYozI_X8QtgrBj0twxbks5uud3KgaJpZM4YQ2CZ> .

[bpaniagua]

@lopezmt 👍 will try asap