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Create qupath initializer job-runner that runs creation dependent on prediction #294

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dchaley opened this issue Jul 22, 2024 · 1 comment

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@dchaley
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dchaley commented Jul 22, 2024

Once #292 and #293 are complete, create a runner (like run-multistep-job.py) that receives a QuPath dataset root, and creates 2 jobs:

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dchaley commented Jul 26, 2024

Note that we need the segmentation to produce a tiff for the whole-cell mask, and for the nucleus mask. I don't know if we even output correctly with compartment=both.

RESULT: we don't, #298

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