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configure.ac
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configure.ac
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AC_INIT( [peakolator], [0.1], [dcjones@cs.washington.edu] )
AM_INIT_AUTOMAKE( [foreign -Wall -Werror] )
m4_ifdef([AM_SILENT_RULES],[AM_SILENT_RULES([yes])])
AC_CONFIG_MACRO_DIR( [m4] )
AC_PROG_CC
AM_PROG_CC_C_O
AC_PROG_CXX
# optimization flags
opt_CFLAGS="-Wall -g -O3 -ffast-math"
dbg_CFLAGS="-Wall -g -O0"
AC_ARG_ENABLE([debug],
[AS_HELP_STRING([--enable-debug],
[enable debugging info (default is no)])],
[], [enable_debug=no])
AS_IF([test "x$enable_debug" = xyes],
[CFLAGS="$dbg_CFLAGS"],
[CFLAGS="$opt_CFLAGS"])
CXXFLAGS=$CFLAGS
AC_DISABLE_STATIC
AC_PROG_LIBTOOL
AC_DEFINE(_GNU_SOURCE) # for asprintf, in particular
AC_DEFINE(_FILE_OFFSET_BITS, 64)
AC_DEFINE(GSL_RANGE_CHECK_OFF)
# zlib
AX_CHECK_ZLIB
# python
AM_PATH_PYTHON
AX_PYTHON_DEVEL( [>= '2.6'] )
AX_PYTHON_MODULE( numpy, 1 )
AX_PYTHON_MODULE( argparse, 1 )
# cython
AC_MSG_CHECKING([for Cython >= 0.11.3])
CYTHON_CHECK_VERSION(0.11.3, [AC_MSG_RESULT(yes)
have_cython=yes],
[AC_MSG_RESULT(no)
have_cython=no])
# gsl
AC_CHECK_LIB([m],[cos])
AC_CHECK_LIB([gslcblas],[cblas_dgemm])
AC_CHECK_LIB([gsl],[gsl_blas_dgemm])
AX_PATH_GSL
# nlopt
AC_CHECK_LIB(nlopt, nlopt_create, , [AC_MSG_ERROR(
[NLopt not found, see http://ab-initio.mit.edu/wiki/index.php/NLopt])])
AC_CONFIG_FILES( [Makefile
src/Makefile
src/samtools/Makefile
src/yaml-cpp/Makefile
])
AC_OUTPUT