/
RPMM0001.ttl
5572 lines (4792 loc) · 292 KB
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RPMM0001.ttl
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@prefix : <http://metadb.riken.jp/ontology/plantMetabolomics/0.1/> .
@prefix qudt: <http://qudt.org/schema/qudt> .
@prefix pm_techPlat: <http://metadb.riken.jp/db/plantMetabolomics/0.1/TechnologyPlatform/> .
@prefix pm_uniAnalysis: <http://metadb.riken.jp/db/plantMetabolomics/0.1/UnivariateAnalysis/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rmd: <http://metadb.riken.jp/> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix pm_sampleAmount: <http://metadb.riken.jp/db/plantMetabolomics/0.1/SampleAmount/> .
@prefix pm_exp: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Experiment/> .
@prefix pm_expFactor: <http://metadb.riken.jp/db/plantMetabolomics/0.1/ExperimentalFactor/> .
@prefix pm_techType: <http://metadb.riken.jp/db/plantMetabolomics/0.1/TechnologyType/> .
@prefix pm_sampleExtProt: <http://metadb.riken.jp/db/plantMetabolomics/0.1/SampleExtractionProtocol/> .
@prefix pm_expDesign: <http://metadb.riken.jp/db/plantMetabolomics/0.1/ExperimentalDesign/> .
@prefix pm_voltage: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Voltage/> .
@prefix dcterms: <http://purl.org/dc/dcmitype/> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix pm_flowRate: <http://metadb.riken.jp/db/plantMetabolomics/0.1/FlowRate/> .
@prefix pm_summarisation: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Summarisation/> .
@prefix pm_samplePrep: <http://metadb.riken.jp/db/plantMetabolomics/0.1/SamplePreparation/> .
@prefix pm_material: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Metarial/> .
@prefix pm_treatment: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Treatment/> .
@prefix pm_sample: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Sample/> .
@prefix pm_expRegime: <http://metadb.riken.jp/db/plantMetabolomics/0.1/ExperimentalRegime/> .
@prefix pm_length: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Length/> .
@prefix pm_massAnalyser: <http://metadb.riken.jp/db/plantMetabolomics/0.1/MassAnalyser/> .
@prefix pm_unit: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Unit/> .
@prefix pm_normal: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Normalisation/> .
@prefix pm_dataAnalysis: <http://metadb.riken.jp/db/plantMetabolomics/0.1/DataAnalysis/> .
@prefix pm_visualisation: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Visualisation/> .
@prefix pm_organ: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Organ/> .
@prefix pm_concentration: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Concentration/> .
@prefix pm_analysedDataset: <http://metadb.riken.jp/db/plantMetabolomics/0.1/AnalysedDataset/> .
@prefix pm_amd: <http://metadb.riken.jp/db/plantMetabolomics/0.1/AnnotationMethodDetails/> .
@prefix pm_rawData: <http://metadb.riken.jp/db/plantMetabolomics/0.1/RawData/> .
@prefix pm_statResFile: <http://metadb.riken.jp/db/plantMetabolomics/0.1/StatisticalResultsFile/> .
@prefix pm_measureCond: <http://metadb.riken.jp/db/plantMetabolomics/0.1/MeasurementCondition/> .
@prefix pm_biosamp: <http://metadb.riken.jp/db/plantMetabolomics/0.1/BiologicalSample/> .
@prefix pm_preProcess: <http://metadb.riken.jp/db/plantMetabolomics/0.1/PreProcessing/> .
@prefix metadb_catalog: <http://metadb.riken.jp/db/DBcatalog/> .
@prefix pm_dataTrans: <http://metadb.riken.jp/db/plantMetabolomics/0.1/DataTransformation/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix pm_measurement: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Measurement/> .
@prefix pm_measureType: <http://metadb.riken.jp/db/plantMetabolomics/0.1/MeasurementType/> .
@prefix pm_massSpecFile: <http://metadb.riken.jp/db/plantMetabolomics/0.1/MassSpectraFile/> .
@prefix pm_compound: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Compound/> .
@prefix pm_rawDataset: <http://metadb.riken.jp/db/plantMetabolomics/0.1/RawDataset/> .
@prefix pm_LightCond: <http://metadb.riken.jp/db/plantMetabolomics/0.1/LightCondition/> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix pm_humidity: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Humidity/> .
@prefix pm_tissue: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Tissue/> .
@prefix pm_multiAnalysis: <http://metadb.riken.jp/db/plantMetabolomics/0.1/MultivariateAnalysis/> .
@prefix pm_fileFormat: <http://metadb.riken.jp/db/plantMetabolomics/0.1/FileFormat/> .
@prefix pm_temperature: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Temperature/> .
@prefix pm_file: <http://metadb.riken.jp/db/plantMetabolomics/0.1/File/> .
@prefix pm_energy: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Energy/> .
@prefix pm_massSpec: <http://metadb.riken.jp/db/plantMetabolomics/0.1/MassSpectometry/> .
@prefix pm_chromato: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Chromatography/> .
@prefix pm_pressure: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Pressure/> .
@prefix pm_peakFile: <http://metadb.riken.jp/db/plantMetabolomics/0.1/PeakFile/> .
@prefix pm_normalMatFile: <http://metadb.riken.jp/db/plantMetabolomics/0.1/NormalisationDataMatrixFile/> .
@prefix pm_time: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Time/> .
@prefix org: <http://www.w3.org/ns/org#> .
@prefix pm_instrument: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Instrument/> .
@prefix pm_org: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Organisation/> .
@prefix pmid: <http://rdf.ncbi.nlm.nih.gov/pubmed/> .
@prefix pm_rawDataFileList: <http://metadb.riken.jp/db/plantMetabolomics/0.1/RawDataFileList/> .
@prefix pm_rawDataSet: <http://metadb.riken.jp/db/plantMetabolomics/0.1/RawDataSet/> .
@prefix pm_person: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Person/> .
@prefix pm_expType: <http://metadb.riken.jp/db/plantMetabolomics/0.1/ExperimentType/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix pm_proj: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Project/> .
@prefix foaf_person: <http://xmlns.com/foaf/0.1/Person/> .
@prefix pm_statDataAnalysis: <http://metadb.riken.jp/db/plantMetabolomics/0.1/StatisticalDataAnalsis/> .
@prefix metadb_db: <http://metadb.riken.jp/db/> .
@prefix bibo: <http://purl.org/ontology/bibo> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix pm_scaling: <http://metadb.riken.jp/db/plantMetabolomics/0.1/Scaling/> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
pm_person:FumioMatsuda
a foaf:Person ;
rdfs:label "松田 史生"@ja , "MATSUDA Fumio"@en ;
:affiliation pm_org:OsakaUnivBioinfo , pm_org:RikenPSC ;
foaf:familyName "松田"@ja , "MATSUDA"@en ;
foaf:firstName "史生"@ja , "Fumio"@en .
:massAnalyser a rdf:Property ;
rdfs:domain :MassSpectrometry ;
rdfs:label "質量分析計"@ja , "mass analyser"@en ;
rdfs:range :MassAnalyser .
pm_rawDataSet:RPMM0001_GC_L_47_1
a :RawDataset ;
rdfs:label "RPMM0001_RawData_GC_L_47_1"@en ;
:file <http://metadb.riken.jp/db/plantMetabolomics/0.1/File/RPMM0001_File_GC_L_47_1(ABF)> , pm_file:RPMM0001_File_GC_L_47_1 .
pm_org:TohokuUnivEng a org:Organization ;
rdfs:label "東北大学大学院 工学研究科"@ja , "Graduate School of Engineering, Tohoku University"@en ;
:postalAddress "〒980-8579 宮城県仙台市青葉区青葉山6-6-07"@ja , "Aobayama 6-6-07, Sendai 980-8579, Japan"@en ;
foaf:page "https://www.eng.tohoku.ac.jp/"^^xsd:anyURI .
pm_normal:RPMM0001 a :Normalisation ;
rdfs:label "RPMM0001_Normalisation"@en ;
:normalisationType obo:MSIO_0000140 ;
dcterms:description "The normalized responses are peak areas corrected using the sample weight and a constant amount of the representative internal standard compound ([<sup>13</sup>C<sub>4<sub>]-hexadecanoic acid)."@en .
<http://metadb.riken.jp/db/plantMetabolomics/0.1/File/RPMM0001_File_GC_L_42_1(ABF)>
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_42_1.abf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/ABF/L_42_1.abf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-abf> ;
:md5 "96b42b07ab12e47cea21eb1a16cd9814" .
<http://metadb.riken.jp/db/plantMetabolomics/0.1/File/RPMM0001_File_GC_L_06_1(ABF)>
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_06_1.abf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/ABF/L_06_1.abf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-abf> ;
:md5 "0bd917328a8df5f0cd6aca327a9f3df5" .
:experimentalFactor a rdf:Property ;
rdfs:domain :ExperimentalDesign ;
rdfs:label "実験因子"@ja , "experimental factor"@en ;
rdfs:range :ExperimenalFactor .
:MassAnalyser a rdfs:Class ;
rdfs:label "質量分析計"@ja , "MassAnalyser"@en .
:experiment a rdf:Property ;
rdfs:domain :Project ;
rdfs:label "実験"@ja , "experiment"@en ;
rdfs:range :Experiment .
pm_person:KeisukeOhta
a foaf:Person ;
rdfs:label "OHTA Keisuke"@en ;
:affiliation pm_org:TokyoInstTechnoSchGSBiosciBiotech ;
foaf:familyName "OHTA"@en ;
foaf:firstName "Keisuke"@en .
pm_person:TaneakiTsugane
a foaf:Person ;
rdfs:label "TSUGANE Taneaki"@en ;
:affiliation pm_org:ChibaPrefAgriResCenter ;
foaf:familyName "TSUGANE"@en ;
foaf:firstName "Taneaki"@en .
pm_statDataAnalysis:RPMM0001_03
a :StatisticalDataAnalysis ;
rdfs:label "RPMM0001_Statistical Data Analysis: z-score of metabolite correlation (ZMC)"@en ;
:software "R" .
pm_biosamp:RPMM0001_L_32_1
a :BiologicalSample ;
rdfs:label "RPMM0001_L_32_1"@en ;
:darkLength "PT8H" ;
:dateOfPlantEstablishment "2006-04-04"^^xsd:date ;
:dayLength "PT16H" ;
:developmentStage "18 days after sowing" ;
:genotype "Col-0" ;
:growthCondition "The sterilized seeds were stratified at 5 degrees C for 2 d, and were successively sown on Murashige and Skoog (MS) medium containing 1% sucrose. Plants saw on the plate were grown in controlled growth chambers for 18 days. Aerial parts were harvested 6 h after the onset of the bright phase at 18 day after sowing." ;
:growthLocation "growth chambers" ;
:growthSupport "agar" ;
:lightCondition pm_LightCond:RPMM0001 ;
:metabolismQuenchingMethod "Snap-freezing in liquid nitrogen within 15 sec of excision" ;
:mutant "<i>tt4</i>" ;
:nutritionalRegime "Murashige and Skoog (MS) medium containing 1% sucrose" ;
:plantOrgan obo:PO_0009006 ;
:plotDesign "Plants of the three genotypes were arranged randomly together on a plate. We prepared 9 plates to collect samples." ;
:relevantGene "AT5G13930" ;
:sampleStorage "Tissue samples were stored in clear polypropylene microfuge tubes at -80 degrees C" ;
:samplingLocation "Japan:Yokohama, RIKEN, Plant Science Cneter" ;
:samplingTime "6 h after the onset of the bright phase" ;
:speciesName "<i>Arabidopsis thaliana</i>" ;
:temperature _:b0 ;
:wateringRegime "No watering" ;
obo:RO_0002162 <http://purl.bioontology.org/ontology/NCBITAXON/3702> ;
dcterms:identifier "L_32_1" .
pm_org:RikenCSRS a org:Organization ;
rdfs:label "理化学研究所 環境資源科学研究センター"@ja , "RIKEN Center for Sustainable Resource Science"@en ;
:postalAddress "〒230-0045 神奈川県横浜市鶴見区末広町1丁目7番22号"@ja , "1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045 Japan"@en ;
foaf:page "http://www.csrs.riken.jp"^^xsd:anyURI .
pm_file:RPMM0001_File_GC_L_39_1
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_39_1.cdf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/L_39_1.cdf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-cdf> ;
:md5 "6082dd630fb192177d22f17e69cef271" .
pm_person:TomonoriOgura
a foaf:Person ;
rdfs:label "OGURA Tomonori"@en ;
:affiliation pm_org:OsakaUnivGSLifeEnvSci ;
foaf:familyName "OGURA"@en ;
foaf:firstName "Tomonori"@en .
pm_org:KyotoUnivGSBiosutdies
a org:Organization ;
rdfs:label "京都大学大学院 生命科学研究科"@ja , "Graduate School of Biosutdies, Kyoto University"@en ;
:postalAddress "〒606-8501 京都市左京区吉田近衛町"@ja , "Yoshida-Konoecho, Sakyo-ku, Kyoto 606-8501 Japan"@en ;
foaf:page "http://www.lif.kyoto-u.ac.jp/e/"^^xsd:anyURI .
pm_rawDataSet:RPMM0001_GC_L_27_1
a :RawDataset ;
rdfs:label "RPMM0001_RawData_GC_L_27_1"@en ;
:file <http://metadb.riken.jp/db/plantMetabolomics/0.1/File/RPMM0001_File_GC_L_27_1(ABF)> , pm_file:RPMM0001_File_GC_L_27_1 .
<http://purl.bioontology.org/ontology/NCBITAXON/3702>
a owl:Class .
pm_person:ChoongHwanLee
a foaf:Person ;
rdfs:label "LEE Choong Hwan"@en ;
:affiliation pm_org:KonkukUniv ;
foaf:familyName "LEE"@en ;
foaf:firstName "Choong Hwan"@en ;
foaf:mbox "mailto:chlee123@konkuk.ac.kr"^^xsd:anyURI .
:Material a rdfs:Class .
pm_org:NagoyaUnivBBCenter
a org:Organization ;
rdfs:label "名古屋大学生物機能開発利用研究センター"@ja , "Bioscience and Biotechnology Center, Nagoya University"@en ;
:postalAddress "〒464-8601 名古屋市千種区不老町"@ja , "Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan"@en ;
foaf:page "http://bbc.agr.nagoya-u.ac.jp/"^^xsd:anyURI .
:DataTransformation a rdfs:Class ;
rdfs:label "データ変換"@ja , "Data Transformation"@en .
pm_file:RPMM0001_File_GC_alkanemix
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):alkane_1.cdf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/alkane_1.cdf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-cdf> ;
:md5 "28e35816b720b327b0bd45d58577b63d" .
pm_sample:RPMM0001_GC_L_03_1
a :Sample ;
rdfs:label "RPMM0001_sample_GC_L_03_1"@en ;
:biologicalSample pm_biosamp:RPMM0001_L_03_1 ;
:samplePreparation pm_samplePrep:RPMM0001_GC .
pm_biosamp:RPMM0001_L_12_1
a :BiologicalSample ;
rdfs:label "RPMM0001_L_12_1"@en ;
:darkLength "PT8H" ;
:dateOfPlantEstablishment "2006-04-04"^^xsd:date ;
:dayLength "PT16H" ;
:developmentStage "18 days after sowing" ;
:genotype "Col-0" ;
:growthCondition "The sterilized seeds were stratified at 5 degrees C for 2 d, and were successively sown on Murashige and Skoog (MS) medium containing 1% sucrose. Plants saw on the plate were grown in controlled growth chambers for 18 days. Aerial parts were harvested 6 h after the onset of the bright phase at 18 day after sowing." ;
:growthLocation "growth chambers" ;
:growthSupport "agar" ;
:lightCondition pm_LightCond:RPMM0001 ;
:metabolismQuenchingMethod "Snap-freezing in liquid nitrogen within 15 sec of excision" ;
:mutant "(WT)" ;
:nutritionalRegime "Murashige and Skoog (MS) medium containing 1% sucrose" ;
:plantOrgan obo:PO_0009006 ;
:plotDesign "Plants of the three genotypes were arranged randomly together on a plate. We prepared 9 plates to collect samples." ;
:sampleStorage "Tissue samples were stored in clear polypropylene microfuge tubes at -80 degrees C" ;
:samplingLocation "Japan:Yokohama, RIKEN, Plant Science Cneter" ;
:samplingTime "6 h after the onset of the bright phase" ;
:speciesName "<i>Arabidopsis thaliana</i>" ;
:temperature _:b0 ;
:wateringRegime "No watering" ;
obo:RO_0002162 <http://purl.bioontology.org/ontology/NCBITAXON/3702> ;
dcterms:identifier "L_12_1" .
pm_file:RPMM0001_File_GC_L_19_1
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_19_1.cdf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/L_19_1.cdf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-cdf> ;
:md5 "c7b6be7a38916b227446bad2d326c2da" .
pm_sample:RPMM0001_GC_L_51_1
a :Sample ;
rdfs:label "RPMM0001_sample_GC_L_51_1"@en ;
:biologicalSample pm_biosamp:RPMM0001_L_51_1 ;
:samplePreparation pm_samplePrep:RPMM0001_GC .
<http://metadb.riken.jp/db/plantMetabolomics/0.1/File/RPMM0001_File_GC_L_32_1(ABF)>
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_32_1.abf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/ABF/L_32_1.abf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-abf> ;
:md5 "5e3867604f5575e3798f95d13d514485" .
<http://metadb.riken.jp/db/plantMetabolomics/0.1/File/RPMM0001_File_GC_L_39_1(ABF)>
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_39_1.abf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/ABF/L_39_1.abf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-abf> ;
:md5 "98af10c37338f18da2857c2852154cd6" .
pm_person:MamiYamazaki
a foaf:Person ;
rdfs:label "YAMAZAKI Mami"@en ;
:affiliation pm_org:ChibaUnivGSPharmaceuticalSci ;
foaf:familyName "YAMAZAKI"@en ;
foaf:firstName "Mami"@en .
:scalingType a rdf:Property ;
rdfs:domain :Scaling ;
rdfs:label "スケーリングの種類"@ja , "Scaling Type"@en ;
rdfs:range :ScalingType .
pm_person:KoichiAizawa
a foaf:Person ;
rdfs:label "AIZAWA Koichi"@en ;
:affiliation pm_org:KagomeCoLtdJp ;
foaf:familyName "AIZAWA"@en ;
foaf:firstName "Koichi"@en .
pm_person:KenShirasu a foaf:Person ;
rdfs:label "SHIRASU Ken"@en , "白須 賢"@ja ;
:Orcid "0000-0002-0349-3870" ;
:affiliation pm_org:RikenCSRS ;
foaf:familyName "白須"@ja , "SHIRASU"@en ;
foaf:firstName "Ken"@en , "賢"@ja ;
foaf:mbox "mailto:ken.shirasu@riken.jp"^^xsd:anyURI .
pm_sample:RPMM0001_GC_L_29_1
a :Sample ;
rdfs:label "RPMM0001_sample_GC_L_29_1"@en ;
:biologicalSample pm_biosamp:RPMM0001_L_29_1 ;
:samplePreparation pm_samplePrep:RPMM0001_GC .
:contactPerson a rdf:Property ;
rdfs:domain :Project ;
rdfs:label "連絡窓口"@ja , "contact person"@en ;
rdfs:range foaf:Person .
:BiologicalSample a rdfs:Class ;
rdfs:label "生物サンプル"@ja , "Biological Sample"@en .
pm_techPlat:GCMS a :TechnologyPlatform ;
rdfs:label "GC-MS"@ja , "GC-MS"@en .
pm_file:RPMM0001_File_GC_L_21_1
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_21_1.cdf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/L_21_1.cdf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-cdf> ;
:md5 "ff493f0fcaf1f30cc537c7f47cd12175" .
pm_person:MotoakiSeki
a foaf:Person ;
rdfs:label "SEKI Motoaki"@en , "関 原明"@ja ;
:Orcid "0000-0001-8288-0467" ;
:affiliation pm_org:CREST , pm_org:RikenCSRS , pm_org:KiharaBR ;
foaf:familyName "SEKI"@en , "関"@ja ;
foaf:firstName "Motoaki"@en , "原明"@ja ;
foaf:mbox "mailto:motoaki.seki@riken.jp"^^xsd:anyURI .
pm_person:MasakiIshikawa
a foaf:Person ;
rdfs:label "ISHIKAWA Masaki"@en ;
:affiliation pm_org:TokyoUnivGSMedicineMetabo ;
foaf:familyName "ISHIKAWA"@en ;
foaf:firstName "Masaki"@en .
:CompressedFile a rdfs:Class ;
rdfs:label "圧縮ファイル"@ja , "Compressed File"@en ;
rdfs:subclassOf :File .
:Humidity a rdfs:Class ;
rdfs:label "湿度"@ja , "Humidity"@en .
pm_sample:RPMM0001_GC_L_31_1
a :Sample ;
rdfs:label "RPMM0001_sample_GC_L_31_1"@en ;
:biologicalSample pm_biosamp:RPMM0001_L_31_1 ;
:samplePreparation pm_samplePrep:RPMM0001_GC .
bibo:Article a rdfs:Class ;
rdfs:label "記事"@ja , "Article"@en .
pm_org:KonkukUniv a org:Organization ;
rdfs:label "Department of Bioscience and Biotechnology, Konkuk University"@en ;
:postalAddress "120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Korea"@en ;
foaf:page "http://www.konkuk.ac.kr/"^^xsd:anyURI .
pm_person:KazuhiroShoji
a foaf:Person ;
rdfs:label "庄子 和博"@ja , "SHOJI Kazuhiro"@en ;
:affiliation pm_org:Denken ;
foaf:familyName "庄子"@ja , "SHOJI"@en ;
foaf:firstName "和博"@ja , "Kazuhiro"@en ;
foaf:mbox "mailto:shoji@criepi.denken.or.jp"^^xsd:anyURI .
pm_measurement:RPMM0001_GC_L_44_1
a :Measurement ;
:measurementCondition pm_measureCond:RPMM0001_GC ;
:rawDataset pm_rawDataSet:RPMM0001_GC_L_44_1 ;
:sampleMeasured pm_sample:RPMM0001_GC_L_44_1 .
pm_org:NIAS a org:Organization ;
rdfs:label "国立研究開発法人 農業生物資源研究所"@ja , "National Institute of Agrobiological Sciences"@en ;
:postalAddress "〒305-8602 茨城県つくば市観音台2-1-2"@ja , "2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan"@en ;
skos:altLabel "NIAS"@en .
pm_file:RPMM0001_File_GC_L_01_1
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_01_1.cdf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/L_01_1.cdf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-cdf> ;
:md5 "8bb60f85441eb4cece0cfca0988b36f5" .
pm_biosamp:RPMM0001_L_39_1
a :BiologicalSample ;
rdfs:label "RPMM0001_L_39_1"@en ;
:darkLength "PT8H" ;
:dateOfPlantEstablishment "2006-04-04"^^xsd:date ;
:dayLength "PT16H" ;
:developmentStage "18 days after sowing" ;
:genotype "Col-0" ;
:growthCondition "The sterilized seeds were stratified at 5 degrees C for 2 d, and were successively sown on Murashige and Skoog (MS) medium containing 1% sucrose. Plants saw on the plate were grown in controlled growth chambers for 18 days. Aerial parts were harvested 6 h after the onset of the bright phase at 18 day after sowing." ;
:growthLocation "growth chambers" ;
:growthSupport "agar" ;
:lightCondition pm_LightCond:RPMM0001 ;
:metabolismQuenchingMethod "Snap-freezing in liquid nitrogen within 15 sec of excision" ;
:mutant "<i>tt4</i>" ;
:nutritionalRegime "Murashige and Skoog (MS) medium containing 1% sucrose" ;
:plantOrgan obo:PO_0009006 ;
:plotDesign "Plants of the three genotypes were arranged randomly together on a plate. We prepared 9 plates to collect samples." ;
:relevantGene "AT5G13930" ;
:sampleStorage "Tissue samples were stored in clear polypropylene microfuge tubes at -80 degrees C" ;
:samplingLocation "Japan:Yokohama, RIKEN, Plant Science Cneter" ;
:samplingTime "6 h after the onset of the bright phase" ;
:speciesName "<i>Arabidopsis thaliana</i>" ;
:temperature _:b0 ;
:wateringRegime "No watering" ;
obo:RO_0002162 <http://purl.bioontology.org/ontology/NCBITAXON/3702> ;
dcterms:identifier "L_39_1" .
pm_person:YoshihikoMorishita
a foaf:Person ;
rdfs:label "MORISHITA Yoshihiko"@en ;
:affiliation pm_org:KDRI ;
foaf:familyName "MORISHITA"@en ;
foaf:firstName "Yoshihiko"@en .
:parameters a rdf:Property ;
rdfs:domain :PreProcessing ;
rdfs:label "パラメータ"@ja , "parameters"@en ;
rdfs:range xsd:string .
pm_person:HiroyukiSuganuma
a foaf:Person ;
rdfs:label "SUGANUMA Hiroyuki"@en ;
:affiliation pm_org:KagomeCoLtdJp ;
foaf:familyName "SUGANUMA"@en ;
foaf:firstName "Hiroyuki"@en .
:SampleExtractionProtorol
a rdfs:Class .
:sampleAmount a rdf:Property ;
rdfs:domain :SamplePreparation ;
rdfs:label "サンプル量"@ja , "sample amount"@en ;
rdfs:range :SampleAmount .
pm_person:YasunoriIchihashi
a foaf:Person ;
rdfs:label "市橋 泰範"@ja , "ICHIHASHI Yasunori"@en ;
:Orcid "0000-0003-1935-4397" ;
:affiliation pm_org:JST , pm_org:RikenCSRS ;
foaf:familyName "ICHIHASHI"@en , "市橋"@ja ;
foaf:firstName "Yasunori"@en , "泰範"@ja ;
foaf:mbox "mailto:yasunori.ichihashi@riken.jp"^^xsd:anyURI .
:Project a rdfs:Class ;
rdfs:label "プロジェクト"@ja , "Project"@en .
pm_person:TatsuyaSuzuki
a foaf:Person ;
rdfs:label "SUZUKI Tatsuya"@en ;
:affiliation pm_org:ChibaPrefAgriResCenter , pm_org:KDRI ;
foaf:familyName "SUZUKI"@en ;
foaf:firstName "Tatsuya"@en .
:LightCondition a rdfs:Class ;
rdfs:label "光条件"@ja , "Light Condition"@en .
pm_file:RPMM0001_File_GC_L_48_1
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_48_1.cdf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/L_48_1.cdf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-cdf> ;
:md5 "cd7147565c0160ac241a296c7c56df1a" .
:massSpectometry a rdf:Property ;
rdfs:domain :MeasurementCondition ;
rdfs:label "質量分析"@ja , "mass spectrometry"@en ;
rdfs:range :MassSpectrometry .
pm_measurement:RPMM0001_GC_L_24_1
a :Measurement ;
:measurementCondition pm_measureCond:RPMM0001_GC ;
:rawDataset pm_rawDataSet:RPMM0001_GC_L_24_1 ;
:sampleMeasured pm_sample:RPMM0001_GC_L_24_1 .
<http://metadb.riken.jp/db/plantMetabolomics/0.1/File/RPMM0001_File_GC_L_36_1(ABF)>
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_36_1.abf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/ABF/L_36_1.abf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-abf> ;
:md5 "cf4a13a6af0bdea0c6a55f016c434eec" .
pm_rawDataSet:RPMM0001_GC_L_36_1
a :RawDataset ;
rdfs:label "RPMM0001_RawData_GC_L_36_1"@en ;
:file <http://metadb.riken.jp/db/plantMetabolomics/0.1/File/RPMM0001_File_GC_L_36_1(ABF)> , pm_file:RPMM0001_File_GC_L_36_1 .
pm_biosamp:RPMM0001_L_19_1
a :BiologicalSample ;
rdfs:label "RPMM0001_L_19_1"@en ;
:darkLength "PT8H" ;
:dateOfPlantEstablishment "2006-04-04"^^xsd:date ;
:dayLength "PT16H" ;
:developmentStage "18 days after sowing" ;
:genotype "Col-0" ;
:growthCondition "The sterilized seeds were stratified at 5 degrees C for 2 d, and were successively sown on Murashige and Skoog (MS) medium containing 1% sucrose. Plants saw on the plate were grown in controlled growth chambers for 18 days. Aerial parts were harvested 6 h after the onset of the bright phase at 18 day after sowing." ;
:growthLocation "growth chambers" ;
:growthSupport "agar" ;
:lightCondition pm_LightCond:RPMM0001 ;
:metabolismQuenchingMethod "Snap-freezing in liquid nitrogen within 15 sec of excision" ;
:mutant "(WT)" ;
:nutritionalRegime "Murashige and Skoog (MS) medium containing 1% sucrose" ;
:plantOrgan obo:PO_0009006 ;
:plotDesign "Plants of the three genotypes were arranged randomly together on a plate. We prepared 9 plates to collect samples." ;
:sampleStorage "Tissue samples were stored in clear polypropylene microfuge tubes at -80 degrees C" ;
:samplingLocation "Japan:Yokohama, RIKEN, Plant Science Cneter" ;
:samplingTime "6 h after the onset of the bright phase" ;
:speciesName "<i>Arabidopsis thaliana</i>" ;
:temperature _:b0 ;
:wateringRegime "No watering" ;
obo:RO_0002162 <http://purl.bioontology.org/ontology/NCBITAXON/3702> ;
dcterms:identifier "L_19_1" .
pm_person:KoeiOkazaki
a foaf:Person ;
rdfs:label "OKAZAKI Koei"@en ;
:affiliation pm_org:KDRI ;
foaf:familyName "OKAZAKI"@en ;
foaf:firstName "Koei"@en .
pm_file:RPMM0001_File_GC_L_50_1
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_50_1.cdf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/L_50_1.cdf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-cdf> ;
:md5 "bad22d304e30e50ab780c73ff04b6a8f" .
pm_sample:RPMM0001_GC_L_12_1
a :Sample ;
rdfs:label "RPMM0001_sample_GC_L_12_1"@en ;
:biologicalSample pm_biosamp:RPMM0001_L_12_1 ;
:samplePreparation pm_samplePrep:RPMM0001_GC .
:mutant a rdf:Property ;
rdfs:domain :BiologicalSample ;
rdfs:label "変異体"@ja , "mutant"@en ;
rdfs:range xsd:string .
:Instrument a rdfs:Class ;
rdfs:label "機器"@ja , "Instrument"@en .
pm_person:MasanoriArita
a foaf:Person ;
rdfs:label "ARITA Masanori"@en , "有田 正規"@ja ;
:Orcid "0000-0001-6706-0487" ;
:affiliation pm_org:RikenCSRS , pm_org:NIG ;
foaf:familyName "有田"@ja , "ARITA"@en ;
foaf:firstName "正規"@ja , "Masanori"@en ;
foaf:mbox "mailto:masanori.arita@riken.jp"^^xsd:anyURI , "mailto:arita@nig.ac.jp"^^xsd:anyURI .
:growthSupport a rdf:Property ;
rdfs:domain :BiologicalSample ;
rdfs:label "生育方法"@ja , "growth support"@en ;
rdfs:range xsd:string .
pm_person:RyoTaguchi a foaf:Person ;
rdfs:label "TAGUCHI Ryo"@en ;
:affiliation pm_org:TokyoUnivGSMedicineMetabo ;
foaf:familyName "TAGUCHI"@en ;
foaf:firstName "Ryo"@en .
pm_biosamp:RPMM0001_L_21_1
a :BiologicalSample ;
rdfs:label "RPMM0001_L_21_1"@en ;
:darkLength "PT8H" ;
:dateOfPlantEstablishment "2006-04-04"^^xsd:date ;
:dayLength "PT16H" ;
:developmentStage "18 days after sowing" ;
:genotype "Col-0" ;
:growthCondition "The sterilized seeds were stratified at 5 degrees C for 2 d, and were successively sown on Murashige and Skoog (MS) medium containing 1% sucrose. Plants saw on the plate were grown in controlled growth chambers for 18 days. Aerial parts were harvested 6 h after the onset of the bright phase at 18 day after sowing." ;
:growthLocation "growth chambers" ;
:growthSupport "agar" ;
:lightCondition pm_LightCond:RPMM0001 ;
:metabolismQuenchingMethod "Snap-freezing in liquid nitrogen within 15 sec of excision" ;
:mutant "<i>tt4</i>" ;
:nutritionalRegime "Murashige and Skoog (MS) medium containing 1% sucrose" ;
:plantOrgan obo:PO_0009006 ;
:plotDesign "Plants of the three genotypes were arranged randomly together on a plate. We prepared 9 plates to collect samples." ;
:relevantGene "AT5G13930" ;
:sampleStorage "Tissue samples were stored in clear polypropylene microfuge tubes at -80 degrees C" ;
:samplingLocation "Japan:Yokohama, RIKEN, Plant Science Cneter" ;
:samplingTime "6 h after the onset of the bright phase" ;
:speciesName "<i>Arabidopsis thaliana</i>" ;
:temperature _:b0 ;
:wateringRegime "No watering" ;
obo:RO_0002162 <http://purl.bioontology.org/ontology/NCBITAXON/3702> ;
dcterms:identifier "L_21_1" .
pm_file:RPMM0001_File_GC_L_28_1
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_28_1.cdf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/L_28_1.cdf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-cdf> ;
:md5 "2deaf7383566488d98ff01d8f5273db2" .
pm_sample:RPMM0001_GC_L_60_1
a :Sample ;
rdfs:label "RPMM0001_sample_GC_L_60_1"@en ;
:biologicalSample pm_biosamp:RPMM0001_L_60_1 ;
:samplePreparation pm_samplePrep:RPMM0001_GC .
pm_normalMatFile:RPMM0001_02
a :NormalisedDataMatrixFile ;
rdfs:label "RPMM0001_Normalised Data Matrix File: AraMetLeaves.RData"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/AnalysedDataset/AraMetLeaves.Rdata"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-Rdata> ;
:md5 "d2eb3263945bd39eef16f5104b40503e" ;
dcterms:description "A metabolite data set. The Arabidopsis metabolome of the aerial regions of individual WT plants and the mto1 and tt4 mutants were analyzed by GC-TOF/MS."@en .
pm_measurement:RPMM0001_GC_L_04_1
a :Measurement ;
:measurementCondition pm_measureCond:RPMM0001_GC ;
:rawDataset pm_rawDataSet:RPMM0001_GC_L_04_1 ;
:sampleMeasured pm_sample:RPMM0001_GC_L_04_1 .
pm_rawDataSet:RPMM0001_GC_L_16_1
a :RawDataset ;
rdfs:label "RPMM0001_RawData_GC_L_16_1"@en ;
:file <http://metadb.riken.jp/db/plantMetabolomics/0.1/File/RPMM0001_File_GC_L_16_1(ABF)> , pm_file:RPMM0001_File_GC_L_16_1 .
pm_org:ChibaPrefAgriResCenter
a org:Organization ;
rdfs:label "千葉県農業総合研究センター"@ja , "Chiba Prefectural Agriculture Research Center"@en ;
:postalAddress "〒266-0006 千葉県千葉市緑区大膳野町８０８"@ja , "808 Ozonocho, Midoriku, Chiba-shi, Chiba 266-0006, Japan"@en ;
foaf:page "https://www.pref.chiba.lg.jp/lab-nourin/"^^xsd:anyURI .
pm_sample:RPMM0001_GC_L_38_1
a :Sample ;
rdfs:label "RPMM0001_sample_GC_L_38_1"@en ;
:biologicalSample pm_biosamp:RPMM0001_L_38_1 ;
:samplePreparation pm_samplePrep:RPMM0001_GC .
pm_org:ChibaUnivGSPharmaceuticalSci
a org:Organization ;
rdfs:label "千葉大学大学院 薬学研究院 遺伝子資源応用研究室"@ja , "Department of Molecular Biology and Biotechnology, Graduate School of Pharmaceutical Sciences, Chiba University"@en ;
:postalAddress "〒260-8675 千葉市中央区亥鼻1-8-1"@ja , "1-8-1 Inohana, Chuo-ku, Chiba 260-8675 JAPAN"@en ;
foaf:page "http://www.p.chiba-u.jp/lab/idenshi/index-e.html"^^xsd:anyURI .
:sampleStorage a rdf:Property ;
rdfs:domain :BiologicalSample ;
rdfs:label "サンプルの保存状態"@ja , "sample storage"@en ;
rdfs:range xsd:string .
pm_file:RPMM0001_File_GC_L_30_1
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_30_1.cdf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/L_30_1.cdf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-cdf> ;
:md5 "1257ad6c774c6d158667b9125ae2a142" .
<http://metadb.riken.jp/db/plantMetabolomics/0.1/File/RPMM0001_File_GC_L_26_1(ABF)>
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_26_1.abf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/ABF/L_26_1.abf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-abf> ;
:md5 "8c77bf0458db6e8850069fa15a4e1d00" .
pm_biosamp:RPMM0001_L_01_1
a :BiologicalSample ;
rdfs:label "RPMM0001_L_01_1"@en ;
:darkLength "PT8H" ;
:dateOfPlantEstablishment "2006-04-04"^^xsd:date ;
:dayLength "PT16H" ;
:developmentStage "18 days after sowing" ;
:genotype "Col-0" ;
:growthCondition "The sterilized seeds were stratified at 5 degrees C for 2 d, and were successively sown on Murashige and Skoog (MS) medium containing 1% sucrose. Plants saw on the plate were grown in controlled growth chambers for 18 days. Aerial parts were harvested 6 h after the onset of the bright phase at 18 day after sowing." ;
:growthLocation "growth chambers" ;
:growthSupport "agar" ;
:lightCondition pm_LightCond:RPMM0001 ;
:metabolismQuenchingMethod "Snap-freezing in liquid nitrogen within 15 sec of excision" ;
:mutant "(WT)" ;
:nutritionalRegime "Murashige and Skoog (MS) medium containing 1% sucrose" ;
:plantOrgan obo:PO_0009006 ;
:plotDesign "Plants of the three genotypes were arranged randomly together on a plate. We prepared 9 plates to collect samples." ;
:sampleStorage "Tissue samples were stored in clear polypropylene microfuge tubes at -80 degrees C" ;
:samplingLocation "Japan:Yokohama, RIKEN, Plant Science Cneter" ;
:samplingTime "6 h after the onset of the bright phase" ;
:speciesName "<i>Arabidopsis thaliana</i>" ;
:temperature _:b0 ;
:wateringRegime "No watering" ;
obo:RO_0002162 <http://purl.bioontology.org/ontology/NCBITAXON/3702> ;
dcterms:identifier "L_01_1" .
pm_file:RPMM0001_File_GC_L_08_1
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_08_1.cdf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/L_08_1.cdf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-cdf> ;
:md5 "64ed91fb1210d351842b4083718eef90" .
pm_sample:RPMM0001_GC_L_40_1
a :Sample ;
rdfs:label "RPMM0001_sample_GC_L_40_1"@en ;
:biologicalSample pm_biosamp:RPMM0001_L_40_1 ;
:samplePreparation pm_samplePrep:RPMM0001_GC .
pm_org:TohokuUnivAgri
a org:Organization ;
rdfs:label "東北大学大学院 農学研究科"@ja , "Graduate School of Agricultural Science, Tohoku University"@en ;
:postalAddress "〒980-8572 仙台市青葉区荒巻字青葉468-1"@ja , "468-1 Aoba, Aramaki-Aza, Aoba-ku, Sendai 980-8572, Japan"@en ;
foaf:page "http://www.agri.tohoku.ac.jp/"^^xsd:anyURI .
xsd:datetime a rdfs:Class .
pm_measurement:RPMM0001_GC_L_53_1
a :Measurement ;
:measurementCondition pm_measureCond:RPMM0001_GC ;
:rawDataset pm_rawDataSet:RPMM0001_GC_L_53_1 ;
:sampleMeasured pm_sample:RPMM0001_GC_L_53_1 .
pm_person:YoshidaKaoru
a foaf:Person ;
rdfs:label "吉田 薫"@ja , "T. YOSHIDA Kaoru"@en ;
:affiliation pm_org:TokyoUnivAgriGrad ;
foaf:familyName "吉田"@ja , "T. YOSHIDA"@en ;
foaf:firstName "薫"@ja , "Kaoru"@en ;
foaf:mbox "mailto:ayosida@mail.ecc.u-tokyo.ac.jp"^^xsd:anyURI .
pm_person:HenningRedestig
a foaf:Person ;
rdfs:label "Henning Redestig"@en ;
:Orcid "0000-0003-2130-9288" ;
:affiliation pm_org:RikenPSC ;
foaf:familyName "Redestig"@en ;
foaf:firstName "Henning"@en .
pm_org:OsakaUniv a org:Organization ;
rdfs:label "大阪大学大学院 工学研究科 生命先端工学専攻"@ja , "Department of Biotechnology, Graduate School of Engineering, Osaka University"@en ;
:postalAddress "〒565-0871 大阪府吹田市山田丘2-1"@ja , "2-1 Yamadaoka, Suita, Osaka 565-0871, Japan"@en ;
foaf:page "http://www.bio.eng.osaka-u.ac.jp/"^^xsd:anyURI .
pm_org:Monsanto a org:Organization ;
rdfs:label "Monsanto Company"@en ;
:postalAddress "800 N. Lindbergh Boulevard, St. Louis, MO 63167"@en .
pm_person:Jong-MyongKim
a foaf:Person ;
rdfs:label "KIM Jong-Myong"@en , "金 鍾明"@ja ;
:Orcid "0000-0003-0017-2577" ;
:affiliation pm_org:RikenCSRS , pm_org:CREST ;
foaf:familyName "KIM"@en , "金"@ja ;
foaf:firstName "鍾明"@ja , "Jong-Myong"@en .
:dateOfPlantEstablishment
a rdf:Property ;
rdfs:domain :BiologicalSample ;
rdfs:label "植物の採取日"@ja , "date of plant establishment"@en ;
rdfs:range xsd:date .
pm_file:RPMM0001_File_GC_L_10_1
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_10_1.cdf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/L_10_1.cdf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-cdf> ;
:md5 "9e08a2be06dc2970990674696ed4c8b0" .
pm_biosamp:RPMM0001_L_48_1
a :BiologicalSample ;
rdfs:label "RPMM0001_L_48_1"@en ;
:darkLength "PT8H" ;
:dateOfPlantEstablishment "2006-04-04"^^xsd:date ;
:dayLength "PT16H" ;
:developmentStage "18 days after sowing" ;
:genotype "Col-0" ;
:growthCondition "The sterilized seeds were stratified at 5 degrees C for 2 d, and were successively sown on Murashige and Skoog (MS) medium containing 1% sucrose. Plants saw on the plate were grown in controlled growth chambers for 18 days. Aerial parts were harvested 6 h after the onset of the bright phase at 18 day after sowing." ;
:growthLocation "growth chambers" ;
:growthSupport "agar" ;
:lightCondition pm_LightCond:RPMM0001 ;
:metabolismQuenchingMethod "Snap-freezing in liquid nitrogen within 15 sec of excision" ;
:mutant "<i>mto1</i>" ;
:nutritionalRegime "Murashige and Skoog (MS) medium containing 1% sucrose" ;
:plantOrgan obo:PO_0009006 ;
:plotDesign "Plants of the three genotypes were arranged randomly together on a plate. We prepared 9 plates to collect samples." ;
:relevantGene "AT3G01120" ;
:sampleStorage "Tissue samples were stored in clear polypropylene microfuge tubes at -80 degrees C" ;
:samplingLocation "Japan:Yokohama, RIKEN, Plant Science Cneter" ;
:samplingTime "6 h after the onset of the bright phase" ;
:speciesName "<i>Arabidopsis thaliana</i>" ;
:temperature _:b0 ;
:wateringRegime "No watering" ;
obo:RO_0002162 <http://purl.bioontology.org/ontology/NCBITAXON/3702> ;
dcterms:identifier "L_48_1" .
<http://www.ebi.ac.uk/efo/EFO_0004020>
a :ExperimentalFactor .
pm_multiAnalysis:RPMM0001_PCA
a :MultivariateAnalysis ;
rdfs:label "RPMM0001_Multivariate Analysis: PCA"@en ;
:software "SIMCA-P 11.0 software (Umetrics AB, Umeaa, Sweden)" .
:processing a rdf:Property ;
rdfs:domain :SamplePreparation ;
rdfs:label "処理法"@ja , "processing"@en ;
rdfs:range xsd:string .
pm_sample:RPMM0001_GC_L_20_1
a :Sample ;
rdfs:label "RPMM0001_sample_GC_L_20_1"@en ;
:biologicalSample pm_biosamp:RPMM0001_L_20_1 ;
:samplePreparation pm_samplePrep:RPMM0001_GC .
pm_person:DorisAlbinsky
a foaf:Person ;
rdfs:label "Doris Albinsky"@en ;
:affiliation pm_org:RikenPSC ;
foaf:familyName "Albinsky"@en ;
foaf:firstName "Doris"@en .
pm_biosamp:RPMM0001_L_50_1
a :BiologicalSample ;
rdfs:label "RPMM0001_L_50_1"@en ;
:darkLength "PT8H" ;
:dateOfPlantEstablishment "2006-04-04"^^xsd:date ;
:dayLength "PT16H" ;
:developmentStage "18 days after sowing" ;
:genotype "Col-0" ;
:growthCondition "The sterilized seeds were stratified at 5 degrees C for 2 d, and were successively sown on Murashige and Skoog (MS) medium containing 1% sucrose. Plants saw on the plate were grown in controlled growth chambers for 18 days. Aerial parts were harvested 6 h after the onset of the bright phase at 18 day after sowing." ;
:growthLocation "growth chambers" ;
:growthSupport "agar" ;
:lightCondition pm_LightCond:RPMM0001 ;
:metabolismQuenchingMethod "Snap-freezing in liquid nitrogen within 15 sec of excision" ;
:mutant "<i>mto1</i>" ;
:nutritionalRegime "Murashige and Skoog (MS) medium containing 1% sucrose" ;
:plantOrgan obo:PO_0009006 ;
:plotDesign "Plants of the three genotypes were arranged randomly together on a plate. We prepared 9 plates to collect samples." ;
:relevantGene "AT3G01120" ;
:sampleStorage "Tissue samples were stored in clear polypropylene microfuge tubes at -80 degrees C" ;
:samplingLocation "Japan:Yokohama, RIKEN, Plant Science Cneter" ;
:samplingTime "6 h after the onset of the bright phase" ;
:speciesName "<i>Arabidopsis thaliana</i>" ;
:temperature _:b0 ;
:wateringRegime "No watering" ;
obo:RO_0002162 <http://purl.bioontology.org/ontology/NCBITAXON/3702> ;
dcterms:identifier "L_50_1" .
pm_file:RPMM0001_File_GC_L_57_1
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_57_1.cdf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/L_57_1.cdf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-cdf> ;
:md5 "44237b5e7209455fd9bf6b3eee8744c0" .
pm_person:KazutakaIkeda
a foaf:Person ;
rdfs:label "IKEDA Kazutaka"@en ;
:affiliation pm_org:TokyoUnivGSMedicineMetabo ;
foaf:familyName "IKEDA"@en ;
foaf:firstName "Kazutaka"@en .
:ExperimentalFactor a rdfs:Class ;
rdfs:label "実験因子"@ja , "Experimental Factor"@en .
:Chromatography a rdfs:Class ;
rdfs:label "クロマトグラフィ"@ja , "Chromatography"@en .
pm_sample:RPMM0001_GC_L_19_1
a :Sample ;
rdfs:label "RPMM0001_sample_GC_L_19_1"@en ;
:biologicalSample pm_biosamp:RPMM0001_L_19_1 ;
:samplePreparation pm_samplePrep:RPMM0001_GC .
pm_measurement:RPMM0001_GC_L_33_1
a :Measurement ;
:measurementCondition pm_measureCond:RPMM0001_GC ;
:rawDataset pm_rawDataSet:RPMM0001_GC_L_33_1 ;
:sampleMeasured pm_sample:RPMM0001_GC_L_33_1 .
pm_person:KotaKera a foaf:Person ;
rdfs:label "KERA Kota"@en ;
:affiliation pm_org:KDRI ;
foaf:familyName "KERA"@en ;
foaf:firstName "Kota"@en .
pm_rawDataSet:RPMM0001_GC_L_45_1
a :RawDataset ;
rdfs:label "RPMM0001_RawData_GC_L_45_1"@en ;
:file <http://metadb.riken.jp/db/plantMetabolomics/0.1/File/RPMM0001_File_GC_L_45_1(ABF)> , pm_file:RPMM0001_File_GC_L_45_1 .
pm_person:MotoyukiAshikari
a foaf:Person ;
rdfs:label "ASHIKARI Motoyuki"@en , "芦苅 基行"@ja ;
:Orcid "0000-0002-8945-2366" ;
:affiliation pm_org:NagoyaUnivBBCenter ;
foaf:familyName "ASHIKARI"@en , "芦苅"@ja ;
foaf:firstName "基行"@ja , "Motoyuki"@en ;
foaf:mbox "mailto:ashi@agr.nagoya-u.ac.jp"^^xsd:anyURI .
pm_biosamp:RPMM0001_L_28_1
a :BiologicalSample ;
rdfs:label "RPMM0001_L_28_1"@en ;
:darkLength "PT8H" ;
:dateOfPlantEstablishment "2006-04-04"^^xsd:date ;
:dayLength "PT16H" ;
:developmentStage "18 days after sowing" ;
:genotype "Col-0" ;
:growthCondition "The sterilized seeds were stratified at 5 degrees C for 2 d, and were successively sown on Murashige and Skoog (MS) medium containing 1% sucrose. Plants saw on the plate were grown in controlled growth chambers for 18 days. Aerial parts were harvested 6 h after the onset of the bright phase at 18 day after sowing." ;
:growthLocation "growth chambers" ;
:growthSupport "agar" ;
:lightCondition pm_LightCond:RPMM0001 ;
:metabolismQuenchingMethod "Snap-freezing in liquid nitrogen within 15 sec of excision" ;
:mutant "<i>tt4</i>" ;
:nutritionalRegime "Murashige and Skoog (MS) medium containing 1% sucrose" ;
:plantOrgan obo:PO_0009006 ;
:plotDesign "Plants of the three genotypes were arranged randomly together on a plate. We prepared 9 plates to collect samples." ;
:relevantGene "AT5G13930" ;
:sampleStorage "Tissue samples were stored in clear polypropylene microfuge tubes at -80 degrees C" ;
:samplingLocation "Japan:Yokohama, RIKEN, Plant Science Cneter" ;
:samplingTime "6 h after the onset of the bright phase" ;
:speciesName "<i>Arabidopsis thaliana</i>" ;
:temperature _:b0 ;
:wateringRegime "No watering" ;
obo:RO_0002162 <http://purl.bioontology.org/ontology/NCBITAXON/3702> ;
dcterms:identifier "L_28_1" .
:derivatisation a rdf:Property ;
rdfs:domain :SamplePreparation ;
rdfs:label "誘導体化"@ja , "derivatisation"@en ;
rdfs:range xsd:string .
pm_person:DaisukeShibata
a foaf:Person ;
rdfs:label "SHIBATA Daisuke"@en ;
:affiliation pm_org:KyotoUnivGSAgriculture , pm_org:KDRI ;
foaf:familyName "SHIBATA"@en ;
foaf:firstName "Daisuke"@en .
pm_person:NayumiAkimoto
a foaf:Person ;
rdfs:label "秋元 奈弓"@ja , "AKIMOTO Nayumi"@en ;
:affiliation pm_org:KDRI ;
foaf:familyName "秋元"@ja , "AKIMOTO"@en ;
foaf:firstName "奈弓"@ja , "Nayumi"@en .
:experimenter a rdf:Property ;
rdfs:domain :Experiment ;
rdfs:label "実験者"@ja , "experimenter"@en ;
rdfs:range foaf:Person .
<http://metadb.riken.jp/db/plantMetabolomics/0.1/File/RPMM0001_File_GC_L_23_1(ABF)>
a :File ;
rdfs:label "RPMM0001 Raw Data File(GC-MS):L_23_1.abf"@en ;
:downloadURL "http://metabobank.riken.jp/data/RPMM0001/RawDataset/ABF/L_23_1.abf"^^xsd:anyURI ;
:fileFormat <nrn:mimetype:application/x-abf> ;
:md5 "271769d320543cd1f96479598249cb01" .
pm_person:ChigenTsukamoto
a foaf:Person ;
rdfs:label "TSUKAMOTO Chigen"@en ;
:affiliation pm_org:IwateUnivDepBiologChemFoodSciFaculAgriculture ;
foaf:familyName "TSUKAMOTO"@en ;
foaf:firstName "Chigen"@en .
pm_biosamp:RPMM0001_L_30_1
a :BiologicalSample ;
rdfs:label "RPMM0001_L_30_1"@en ;
:darkLength "PT8H" ;
:dateOfPlantEstablishment "2006-04-04"^^xsd:date ;
:dayLength "PT16H" ;
:developmentStage "18 days after sowing" ;
:genotype "Col-0" ;
:growthCondition "The sterilized seeds were stratified at 5 degrees C for 2 d, and were successively sown on Murashige and Skoog (MS) medium containing 1% sucrose. Plants saw on the plate were grown in controlled growth chambers for 18 days. Aerial parts were harvested 6 h after the onset of the bright phase at 18 day after sowing." ;
:growthLocation "growth chambers" ;
:growthSupport "agar" ;
:lightCondition pm_LightCond:RPMM0001 ;
:metabolismQuenchingMethod "Snap-freezing in liquid nitrogen within 15 sec of excision" ;
:mutant "<i>tt4</i>" ;
:nutritionalRegime "Murashige and Skoog (MS) medium containing 1% sucrose" ;
:plantOrgan obo:PO_0009006 ;