This repo corresponds to the codes employed to generate plots for the JCI Insight article titled:
Please contact us anytime for details or troubleshooting. Happy to help. This is the list of files that are part of this repo. Each file contains comments/troubleshoot tips along with associated code.
Multi_range_rows (for creating heatmaps) | Dimension_reduction (using principal component analysis) | Hierarchical_clustering (unsupervised clustering and heatmap generation) | Multiple_correlation_analysis (pairwise correlation of multiple samples) | Operations_large_file (FASTQ_split_access) | Testing_intergroup_variations (ANOVA to test variability) | Gene_rhythms (Calculation_of_rhythmicity) |
More details can be provided upon request.
Technical Requirements: Softwares, Languages et al: Base requirements for specific steps: Perl (Strawberry) - 5.32.0 C++ with gcc 7.2 compiler, C (check your computer manual), Cygwin for Windows - 3.1, Bash - 5.0, Windows Command Prompt (check your computer manual), Tensorflow - Core v2.3.0.