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AlphaFold v2.0.1
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@Augustin-Zidek Augustin-Zidek released this 30 Sep 10:40
· 118 commits to main since this release
v2.0.1
1d43aaf

Version 2.0.1 is mainly a bug fix release. We thank everyone who reported issues and proposed solutions.

Change log:

  • [new feature] Added AlphaFold Colab notebook that enables convenient folding from your browser.
  • [new feature] The reduced_dbs preset was added together with small BFD.
  • Some of the genetic databases are now mirrored on GCP.
  • Added a missing data/__init__.py and model/tf/__init__.py files.
  • README fixes and additions.
  • Switched to using cudnn base image based on Ubuntu 18.04.
  • Switched to tensorflow-cpu since we don't need a GPU when running the data pipeline.
  • Improved logging in the AlphaFold pipeline.
  • Fixed a few typos and added and fixed a few comments.
  • Added pLDDT in the B-factor column of the output PDBs.
  • Skip obsolete PDB templates that don't have a replacement.
  • Small test improvements.
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