- Get a message when bedtools is installed instead of crashing without any message.
- Always test if a bedgraph is tabix indexed without checking the extension
- Fix a bug which was happening when
operation
orsummary_method
was used on bedgraph whereas the bedgraph had some missing intervals. - Enforcing version 15 of HiCMatrix. Version 14 had a bug concerning the application of the correction factors of cool files.