Input matrix header / rownames

[blmoore]

Supplying a raw matrix of numbers throws ERROR: Must supply headered matrix!

Does this mean inputs must have headers in the format of your example inputs (something like bin#|genome|chr:bp-bp)? Would be helpful to document either way (apologies my perl is too rusty to figure this out from the source).

[blajoie]

Yes the matrix must have headers.
(will add additional documentation - sorry!)

Header format is:
name|assembly|chr:start-end

e.g.
bin1|hg19|chr1:200000-240000
(header name must be unique)

This script only works on symmetrical, binned data (fixed size bin).

[blmoore]

Great, thanks!