/
RAxML_info.FBMGV_m20p5
319 lines (270 loc) · 24.4 KB
/
RAxML_info.FBMGV_m20p5
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
This is RAxML version 8.0.16 released by Alexandros Stamatakis on March 21 2014.
With greatly appreciated code contributions by:
Andre Aberer (HITS)
Simon Berger (HITS)
Alexey Kozlov (HITS)
Nick Pattengale (Sandia)
Wayne Pfeiffer (SDSC)
Akifumi S. Tanabe (NRIFS)
David Dao (KIT)
Charlie Taylor (UF)
Alignment has 158262 distinct alignment patterns
Proportion of gaps and completely undetermined characters in this alignment: 16.66%
RAxML rapid bootstrapping and subsequent ML search
Using 1 distinct models/data partitions with joint branch length optimization
Executing 200 rapid bootstrap inferences and thereafter a thorough ML search
All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units
Partition: 0
Alignment Patterns: 158262
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
RAxML was called as follows:
raxmlHPC-PTHREADS-AVX -f a -m GTRGAMMA -N 200 -x 12345 -p 12345 -T 20 -o NI,HE -w /home/deren/Documents/Oaks/Virentes/analysis_raxml/ -s analysis_pyrad/outfiles/FBMGV_c85d6m20p5.phy -n FBMGV_m20p5
Time for BS model parameter optimization 49.490182
Bootstrap[0]: Time 75.084446 seconds, bootstrap likelihood -2463997.156183, best rearrangement setting 13
Bootstrap[1]: Time 24.299309 seconds, bootstrap likelihood -2465100.630854, best rearrangement setting 13
Bootstrap[2]: Time 23.927212 seconds, bootstrap likelihood -2470398.631398, best rearrangement setting 12
Bootstrap[3]: Time 24.172024 seconds, bootstrap likelihood -2463952.405559, best rearrangement setting 15
Bootstrap[4]: Time 23.893949 seconds, bootstrap likelihood -2464047.912170, best rearrangement setting 10
Bootstrap[5]: Time 25.273986 seconds, bootstrap likelihood -2470266.088125, best rearrangement setting 10
Bootstrap[6]: Time 25.176994 seconds, bootstrap likelihood -2471360.528168, best rearrangement setting 6
Bootstrap[7]: Time 24.608383 seconds, bootstrap likelihood -2470333.984667, best rearrangement setting 14
Bootstrap[8]: Time 23.581871 seconds, bootstrap likelihood -2462799.897041, best rearrangement setting 5
Bootstrap[9]: Time 24.161942 seconds, bootstrap likelihood -2469606.815933, best rearrangement setting 7
Bootstrap[10]: Time 24.473055 seconds, bootstrap likelihood -2468519.749807, best rearrangement setting 7
Bootstrap[11]: Time 10.477494 seconds, bootstrap likelihood -2468812.022301, best rearrangement setting 5
Bootstrap[12]: Time 24.310557 seconds, bootstrap likelihood -2463267.616830, best rearrangement setting 8
Bootstrap[13]: Time 24.633833 seconds, bootstrap likelihood -2469894.499462, best rearrangement setting 7
Bootstrap[14]: Time 25.622404 seconds, bootstrap likelihood -2469899.020339, best rearrangement setting 12
Bootstrap[15]: Time 26.609818 seconds, bootstrap likelihood -2469715.022668, best rearrangement setting 15
Bootstrap[16]: Time 27.271900 seconds, bootstrap likelihood -2468622.427747, best rearrangement setting 12
Bootstrap[17]: Time 26.618812 seconds, bootstrap likelihood -2468580.530462, best rearrangement setting 12
Bootstrap[18]: Time 26.814409 seconds, bootstrap likelihood -2471143.042823, best rearrangement setting 5
Bootstrap[19]: Time 26.555353 seconds, bootstrap likelihood -2468284.457150, best rearrangement setting 8
Bootstrap[20]: Time 27.612216 seconds, bootstrap likelihood -2464736.587240, best rearrangement setting 10
Bootstrap[21]: Time 10.886928 seconds, bootstrap likelihood -2472846.824282, best rearrangement setting 6
Bootstrap[22]: Time 26.041000 seconds, bootstrap likelihood -2467575.085531, best rearrangement setting 5
Bootstrap[23]: Time 26.917861 seconds, bootstrap likelihood -2470023.975336, best rearrangement setting 7
Bootstrap[24]: Time 26.779674 seconds, bootstrap likelihood -2471180.534238, best rearrangement setting 8
Bootstrap[25]: Time 26.307744 seconds, bootstrap likelihood -2467868.407357, best rearrangement setting 6
Bootstrap[26]: Time 27.047747 seconds, bootstrap likelihood -2468027.826238, best rearrangement setting 12
Bootstrap[27]: Time 25.288616 seconds, bootstrap likelihood -2465904.009909, best rearrangement setting 10
Bootstrap[28]: Time 24.459150 seconds, bootstrap likelihood -2466905.735095, best rearrangement setting 11
Bootstrap[29]: Time 25.466358 seconds, bootstrap likelihood -2471660.781497, best rearrangement setting 12
Bootstrap[30]: Time 24.380050 seconds, bootstrap likelihood -2468544.303523, best rearrangement setting 15
Bootstrap[31]: Time 24.984217 seconds, bootstrap likelihood -2467786.097039, best rearrangement setting 15
Bootstrap[32]: Time 25.022325 seconds, bootstrap likelihood -2462011.954597, best rearrangement setting 6
Bootstrap[33]: Time 25.121701 seconds, bootstrap likelihood -2467182.888681, best rearrangement setting 15
Bootstrap[34]: Time 24.454475 seconds, bootstrap likelihood -2468023.326732, best rearrangement setting 11
Bootstrap[35]: Time 24.482348 seconds, bootstrap likelihood -2464669.669096, best rearrangement setting 8
Bootstrap[36]: Time 10.062750 seconds, bootstrap likelihood -2464423.147603, best rearrangement setting 9
Bootstrap[37]: Time 23.457342 seconds, bootstrap likelihood -2469184.454649, best rearrangement setting 11
Bootstrap[38]: Time 23.938491 seconds, bootstrap likelihood -2471542.576273, best rearrangement setting 8
Bootstrap[39]: Time 24.363699 seconds, bootstrap likelihood -2468673.906264, best rearrangement setting 13
Bootstrap[40]: Time 24.204441 seconds, bootstrap likelihood -2468011.294340, best rearrangement setting 13
Bootstrap[41]: Time 24.227253 seconds, bootstrap likelihood -2464859.641393, best rearrangement setting 10
Bootstrap[42]: Time 22.731881 seconds, bootstrap likelihood -2472568.588293, best rearrangement setting 5
Bootstrap[43]: Time 23.701213 seconds, bootstrap likelihood -2466965.107781, best rearrangement setting 14
Bootstrap[44]: Time 23.686679 seconds, bootstrap likelihood -2471821.595539, best rearrangement setting 10
Bootstrap[45]: Time 23.691050 seconds, bootstrap likelihood -2465853.293837, best rearrangement setting 15
Bootstrap[46]: Time 24.191508 seconds, bootstrap likelihood -2472317.323903, best rearrangement setting 14
Bootstrap[47]: Time 24.481115 seconds, bootstrap likelihood -2468180.701900, best rearrangement setting 8
Bootstrap[48]: Time 24.539634 seconds, bootstrap likelihood -2470385.272689, best rearrangement setting 6
Bootstrap[49]: Time 25.452526 seconds, bootstrap likelihood -2468342.536678, best rearrangement setting 7
Bootstrap[50]: Time 24.996453 seconds, bootstrap likelihood -2469327.731559, best rearrangement setting 7
Bootstrap[51]: Time 23.920373 seconds, bootstrap likelihood -2466119.740401, best rearrangement setting 11
Bootstrap[52]: Time 24.146593 seconds, bootstrap likelihood -2465563.990213, best rearrangement setting 12
Bootstrap[53]: Time 24.476447 seconds, bootstrap likelihood -2466857.282847, best rearrangement setting 8
Bootstrap[54]: Time 23.725544 seconds, bootstrap likelihood -2466459.491813, best rearrangement setting 9
Bootstrap[55]: Time 24.199242 seconds, bootstrap likelihood -2470381.012704, best rearrangement setting 11
Bootstrap[56]: Time 23.240827 seconds, bootstrap likelihood -2463118.609803, best rearrangement setting 5
Bootstrap[57]: Time 23.248789 seconds, bootstrap likelihood -2467273.388274, best rearrangement setting 7
Bootstrap[58]: Time 23.775362 seconds, bootstrap likelihood -2467923.838437, best rearrangement setting 10
Bootstrap[59]: Time 23.845102 seconds, bootstrap likelihood -2468849.555029, best rearrangement setting 9
Bootstrap[60]: Time 24.262060 seconds, bootstrap likelihood -2465655.406758, best rearrangement setting 7
Bootstrap[61]: Time 23.551494 seconds, bootstrap likelihood -2462163.310975, best rearrangement setting 5
Bootstrap[62]: Time 24.129409 seconds, bootstrap likelihood -2467595.184403, best rearrangement setting 11
Bootstrap[63]: Time 24.197897 seconds, bootstrap likelihood -2468964.749591, best rearrangement setting 12
Bootstrap[64]: Time 24.078131 seconds, bootstrap likelihood -2466762.700272, best rearrangement setting 7
Bootstrap[65]: Time 23.703676 seconds, bootstrap likelihood -2468769.865283, best rearrangement setting 5
Bootstrap[66]: Time 23.591140 seconds, bootstrap likelihood -2466582.304360, best rearrangement setting 5
Bootstrap[67]: Time 24.093925 seconds, bootstrap likelihood -2470105.127205, best rearrangement setting 15
Bootstrap[68]: Time 25.540474 seconds, bootstrap likelihood -2468585.117634, best rearrangement setting 11
Bootstrap[69]: Time 26.520154 seconds, bootstrap likelihood -2471726.941564, best rearrangement setting 5
Bootstrap[70]: Time 26.333985 seconds, bootstrap likelihood -2468879.179368, best rearrangement setting 8
Bootstrap[71]: Time 25.397560 seconds, bootstrap likelihood -2470620.726622, best rearrangement setting 10
Bootstrap[72]: Time 26.848608 seconds, bootstrap likelihood -2467055.546599, best rearrangement setting 11
Bootstrap[73]: Time 27.305807 seconds, bootstrap likelihood -2465638.506076, best rearrangement setting 9
Bootstrap[74]: Time 26.502929 seconds, bootstrap likelihood -2466350.963110, best rearrangement setting 5
Bootstrap[75]: Time 27.004585 seconds, bootstrap likelihood -2464876.595795, best rearrangement setting 8
Bootstrap[76]: Time 26.251759 seconds, bootstrap likelihood -2463426.631083, best rearrangement setting 9
Bootstrap[77]: Time 25.753075 seconds, bootstrap likelihood -2469283.111730, best rearrangement setting 11
Bootstrap[78]: Time 24.792883 seconds, bootstrap likelihood -2468564.115020, best rearrangement setting 15
Bootstrap[79]: Time 23.943376 seconds, bootstrap likelihood -2469910.596181, best rearrangement setting 9
Bootstrap[80]: Time 24.498781 seconds, bootstrap likelihood -2462075.872074, best rearrangement setting 15
Bootstrap[81]: Time 11.041780 seconds, bootstrap likelihood -2465862.518551, best rearrangement setting 7
Bootstrap[82]: Time 24.751616 seconds, bootstrap likelihood -2466880.401239, best rearrangement setting 6
Bootstrap[83]: Time 23.945247 seconds, bootstrap likelihood -2471349.283297, best rearrangement setting 10
Bootstrap[84]: Time 24.551385 seconds, bootstrap likelihood -2466402.332499, best rearrangement setting 11
Bootstrap[85]: Time 24.381635 seconds, bootstrap likelihood -2473358.114818, best rearrangement setting 8
Bootstrap[86]: Time 24.850040 seconds, bootstrap likelihood -2472250.516490, best rearrangement setting 7
Bootstrap[87]: Time 24.454594 seconds, bootstrap likelihood -2468654.933132, best rearrangement setting 7
Bootstrap[88]: Time 24.466680 seconds, bootstrap likelihood -2464895.266020, best rearrangement setting 12
Bootstrap[89]: Time 26.427751 seconds, bootstrap likelihood -2467867.970732, best rearrangement setting 10
Bootstrap[90]: Time 28.805284 seconds, bootstrap likelihood -2467657.355493, best rearrangement setting 8
Bootstrap[91]: Time 28.639346 seconds, bootstrap likelihood -2463867.523058, best rearrangement setting 12
Bootstrap[92]: Time 26.718752 seconds, bootstrap likelihood -2466705.906800, best rearrangement setting 13
Bootstrap[93]: Time 26.355074 seconds, bootstrap likelihood -2468609.304525, best rearrangement setting 15
Bootstrap[94]: Time 25.788089 seconds, bootstrap likelihood -2467300.086850, best rearrangement setting 5
Bootstrap[95]: Time 24.522279 seconds, bootstrap likelihood -2467706.457577, best rearrangement setting 5
Bootstrap[96]: Time 25.344975 seconds, bootstrap likelihood -2473796.085587, best rearrangement setting 13
Bootstrap[97]: Time 24.820686 seconds, bootstrap likelihood -2471272.053330, best rearrangement setting 11
Bootstrap[98]: Time 24.612583 seconds, bootstrap likelihood -2469781.484630, best rearrangement setting 6
Bootstrap[99]: Time 24.720576 seconds, bootstrap likelihood -2471563.672977, best rearrangement setting 14
Bootstrap[100]: Time 25.083839 seconds, bootstrap likelihood -2466043.366514, best rearrangement setting 12
Bootstrap[101]: Time 24.594104 seconds, bootstrap likelihood -2467396.938577, best rearrangement setting 10
Bootstrap[102]: Time 23.672961 seconds, bootstrap likelihood -2468955.607289, best rearrangement setting 8
Bootstrap[103]: Time 24.218340 seconds, bootstrap likelihood -2468248.821601, best rearrangement setting 8
Bootstrap[104]: Time 27.399031 seconds, bootstrap likelihood -2471079.628451, best rearrangement setting 15
Bootstrap[105]: Time 27.842541 seconds, bootstrap likelihood -2466995.613884, best rearrangement setting 7
Bootstrap[106]: Time 26.742474 seconds, bootstrap likelihood -2462580.017868, best rearrangement setting 6
Bootstrap[107]: Time 26.901610 seconds, bootstrap likelihood -2469026.876959, best rearrangement setting 13
Bootstrap[108]: Time 25.372624 seconds, bootstrap likelihood -2472526.445709, best rearrangement setting 14
Bootstrap[109]: Time 10.056371 seconds, bootstrap likelihood -2471460.710202, best rearrangement setting 12
Bootstrap[110]: Time 24.605946 seconds, bootstrap likelihood -2469339.918395, best rearrangement setting 7
Bootstrap[111]: Time 23.921732 seconds, bootstrap likelihood -2466500.516103, best rearrangement setting 15
Bootstrap[112]: Time 24.202838 seconds, bootstrap likelihood -2468252.581052, best rearrangement setting 14
Bootstrap[113]: Time 23.897471 seconds, bootstrap likelihood -2471554.845328, best rearrangement setting 5
Bootstrap[114]: Time 23.941704 seconds, bootstrap likelihood -2464566.433181, best rearrangement setting 6
Bootstrap[115]: Time 24.376900 seconds, bootstrap likelihood -2466676.148486, best rearrangement setting 7
Bootstrap[116]: Time 24.249322 seconds, bootstrap likelihood -2468815.149137, best rearrangement setting 11
Bootstrap[117]: Time 26.091635 seconds, bootstrap likelihood -2466831.825223, best rearrangement setting 8
Bootstrap[118]: Time 27.514286 seconds, bootstrap likelihood -2467730.667592, best rearrangement setting 9
Bootstrap[119]: Time 26.926452 seconds, bootstrap likelihood -2467007.390673, best rearrangement setting 14
Bootstrap[120]: Time 27.005698 seconds, bootstrap likelihood -2469014.387771, best rearrangement setting 12
Bootstrap[121]: Time 27.238252 seconds, bootstrap likelihood -2471905.408440, best rearrangement setting 8
Bootstrap[122]: Time 27.719454 seconds, bootstrap likelihood -2466876.025584, best rearrangement setting 9
Bootstrap[123]: Time 27.407671 seconds, bootstrap likelihood -2467499.083644, best rearrangement setting 6
Bootstrap[124]: Time 27.356786 seconds, bootstrap likelihood -2469679.509936, best rearrangement setting 11
Bootstrap[125]: Time 27.349476 seconds, bootstrap likelihood -2469490.068173, best rearrangement setting 11
Bootstrap[126]: Time 26.877606 seconds, bootstrap likelihood -2466910.284926, best rearrangement setting 12
Bootstrap[127]: Time 25.867301 seconds, bootstrap likelihood -2469256.824336, best rearrangement setting 9
Bootstrap[128]: Time 24.693408 seconds, bootstrap likelihood -2468347.378100, best rearrangement setting 11
Bootstrap[129]: Time 25.149522 seconds, bootstrap likelihood -2468940.111662, best rearrangement setting 5
Bootstrap[130]: Time 25.232543 seconds, bootstrap likelihood -2468768.751049, best rearrangement setting 10
Bootstrap[131]: Time 26.099831 seconds, bootstrap likelihood -2464477.288449, best rearrangement setting 9
Bootstrap[132]: Time 25.785763 seconds, bootstrap likelihood -2472427.854129, best rearrangement setting 14
Bootstrap[133]: Time 25.273912 seconds, bootstrap likelihood -2464389.333533, best rearrangement setting 13
Bootstrap[134]: Time 10.584091 seconds, bootstrap likelihood -2469617.700717, best rearrangement setting 6
Bootstrap[135]: Time 24.780249 seconds, bootstrap likelihood -2466943.583196, best rearrangement setting 11
Bootstrap[136]: Time 24.886303 seconds, bootstrap likelihood -2465722.958583, best rearrangement setting 13
Bootstrap[137]: Time 25.861972 seconds, bootstrap likelihood -2466710.236188, best rearrangement setting 6
Bootstrap[138]: Time 26.921672 seconds, bootstrap likelihood -2468676.120388, best rearrangement setting 15
Bootstrap[139]: Time 26.270385 seconds, bootstrap likelihood -2468477.797825, best rearrangement setting 5
Bootstrap[140]: Time 26.576358 seconds, bootstrap likelihood -2466861.660750, best rearrangement setting 13
Bootstrap[141]: Time 25.893655 seconds, bootstrap likelihood -2464365.355697, best rearrangement setting 5
Bootstrap[142]: Time 26.290917 seconds, bootstrap likelihood -2467259.579063, best rearrangement setting 15
Bootstrap[143]: Time 26.291737 seconds, bootstrap likelihood -2468044.292778, best rearrangement setting 7
Bootstrap[144]: Time 26.753743 seconds, bootstrap likelihood -2466669.301137, best rearrangement setting 13
Bootstrap[145]: Time 26.801888 seconds, bootstrap likelihood -2469912.375607, best rearrangement setting 7
Bootstrap[146]: Time 26.502142 seconds, bootstrap likelihood -2469286.864004, best rearrangement setting 9
Bootstrap[147]: Time 26.812954 seconds, bootstrap likelihood -2469895.983074, best rearrangement setting 12
Bootstrap[148]: Time 26.364855 seconds, bootstrap likelihood -2466168.120904, best rearrangement setting 8
Bootstrap[149]: Time 26.621429 seconds, bootstrap likelihood -2470896.493170, best rearrangement setting 12
Bootstrap[150]: Time 26.503934 seconds, bootstrap likelihood -2469163.699855, best rearrangement setting 14
Bootstrap[151]: Time 26.013811 seconds, bootstrap likelihood -2467995.972471, best rearrangement setting 5
Bootstrap[152]: Time 24.553290 seconds, bootstrap likelihood -2470726.279980, best rearrangement setting 5
Bootstrap[153]: Time 24.313088 seconds, bootstrap likelihood -2466479.540526, best rearrangement setting 13
Bootstrap[154]: Time 25.199269 seconds, bootstrap likelihood -2465589.137757, best rearrangement setting 14
Bootstrap[155]: Time 26.293139 seconds, bootstrap likelihood -2470289.514833, best rearrangement setting 13
Bootstrap[156]: Time 25.620422 seconds, bootstrap likelihood -2464599.853975, best rearrangement setting 11
Bootstrap[157]: Time 24.721683 seconds, bootstrap likelihood -2466917.162241, best rearrangement setting 8
Bootstrap[158]: Time 24.960930 seconds, bootstrap likelihood -2465418.213810, best rearrangement setting 8
Bootstrap[159]: Time 25.819075 seconds, bootstrap likelihood -2466799.650942, best rearrangement setting 5
Bootstrap[160]: Time 27.603616 seconds, bootstrap likelihood -2467583.988970, best rearrangement setting 15
Bootstrap[161]: Time 26.918378 seconds, bootstrap likelihood -2468791.650483, best rearrangement setting 13
Bootstrap[162]: Time 27.398082 seconds, bootstrap likelihood -2465199.024991, best rearrangement setting 13
Bootstrap[163]: Time 27.515597 seconds, bootstrap likelihood -2470635.095598, best rearrangement setting 12
Bootstrap[164]: Time 27.966366 seconds, bootstrap likelihood -2466071.418183, best rearrangement setting 7
Bootstrap[165]: Time 26.248774 seconds, bootstrap likelihood -2466656.278725, best rearrangement setting 13
Bootstrap[166]: Time 25.585166 seconds, bootstrap likelihood -2472473.410786, best rearrangement setting 10
Bootstrap[167]: Time 25.023515 seconds, bootstrap likelihood -2467356.604269, best rearrangement setting 12
Bootstrap[168]: Time 26.619662 seconds, bootstrap likelihood -2466737.576243, best rearrangement setting 14
Bootstrap[169]: Time 25.791511 seconds, bootstrap likelihood -2467203.392806, best rearrangement setting 10
Bootstrap[170]: Time 25.388852 seconds, bootstrap likelihood -2470347.108262, best rearrangement setting 5
Bootstrap[171]: Time 26.445591 seconds, bootstrap likelihood -2467400.962323, best rearrangement setting 11
Bootstrap[172]: Time 26.233439 seconds, bootstrap likelihood -2467125.298185, best rearrangement setting 12
Bootstrap[173]: Time 27.253420 seconds, bootstrap likelihood -2471910.244366, best rearrangement setting 11
Bootstrap[174]: Time 10.924702 seconds, bootstrap likelihood -2464044.509527, best rearrangement setting 15
Bootstrap[175]: Time 26.417688 seconds, bootstrap likelihood -2469597.161817, best rearrangement setting 14
Bootstrap[176]: Time 24.283451 seconds, bootstrap likelihood -2468031.207538, best rearrangement setting 8
Bootstrap[177]: Time 24.786446 seconds, bootstrap likelihood -2467382.110611, best rearrangement setting 8
Bootstrap[178]: Time 25.912772 seconds, bootstrap likelihood -2467272.340784, best rearrangement setting 14
Bootstrap[179]: Time 26.088733 seconds, bootstrap likelihood -2470561.826637, best rearrangement setting 5
Bootstrap[180]: Time 27.917738 seconds, bootstrap likelihood -2469591.206434, best rearrangement setting 12
Bootstrap[181]: Time 26.255559 seconds, bootstrap likelihood -2468106.057151, best rearrangement setting 14
Bootstrap[182]: Time 25.459369 seconds, bootstrap likelihood -2468876.035207, best rearrangement setting 7
Bootstrap[183]: Time 9.607656 seconds, bootstrap likelihood -2470927.177533, best rearrangement setting 11
Bootstrap[184]: Time 25.781347 seconds, bootstrap likelihood -2464690.254492, best rearrangement setting 15
Bootstrap[185]: Time 26.751769 seconds, bootstrap likelihood -2469669.924448, best rearrangement setting 8
Bootstrap[186]: Time 25.554853 seconds, bootstrap likelihood -2465914.629766, best rearrangement setting 13
Bootstrap[187]: Time 25.743363 seconds, bootstrap likelihood -2465583.705396, best rearrangement setting 8
Bootstrap[188]: Time 27.353304 seconds, bootstrap likelihood -2469556.946765, best rearrangement setting 12
Bootstrap[189]: Time 11.037970 seconds, bootstrap likelihood -2467839.873011, best rearrangement setting 11
Bootstrap[190]: Time 25.322023 seconds, bootstrap likelihood -2468021.272238, best rearrangement setting 15
Bootstrap[191]: Time 24.533879 seconds, bootstrap likelihood -2469893.729778, best rearrangement setting 8
Bootstrap[192]: Time 25.420502 seconds, bootstrap likelihood -2469596.231320, best rearrangement setting 8
Bootstrap[193]: Time 26.798108 seconds, bootstrap likelihood -2470210.722628, best rearrangement setting 10
Bootstrap[194]: Time 10.685988 seconds, bootstrap likelihood -2470483.911342, best rearrangement setting 8
Bootstrap[195]: Time 26.774622 seconds, bootstrap likelihood -2462775.307385, best rearrangement setting 7
Bootstrap[196]: Time 27.553463 seconds, bootstrap likelihood -2468124.507758, best rearrangement setting 11
Bootstrap[197]: Time 27.587673 seconds, bootstrap likelihood -2464658.220603, best rearrangement setting 8
Bootstrap[198]: Time 10.984971 seconds, bootstrap likelihood -2466825.492968, best rearrangement setting 15
Bootstrap[199]: Time 23.727361 seconds, bootstrap likelihood -2465679.288402, best rearrangement setting 8
Overall Time for 200 Rapid Bootstraps 4994.151075 seconds
Average Time per Rapid Bootstrap 24.970755 seconds
Starting ML Search ...
Fast ML optimization finished
Fast ML search Time: 3556.954129 seconds
Slow ML Search 0 Likelihood: -2468092.412374
Slow ML Search 1 Likelihood: -2468092.411882
Slow ML Search 2 Likelihood: -2468092.412464
Slow ML Search 3 Likelihood: -2468092.412282
Slow ML Search 4 Likelihood: -2468092.411644
Slow ML Search 5 Likelihood: -2468092.411647
Slow ML Search 6 Likelihood: -2468092.411642
Slow ML Search 7 Likelihood: -2468092.411847
Slow ML Search 8 Likelihood: -2468092.411813
Slow ML Search 9 Likelihood: -2468092.411647
Slow ML optimization finished
Slow ML search Time: 618.560356 seconds
Thorough ML search Time: 197.216015 seconds
Final ML Optimization Likelihood: -2468092.411675
Model Information:
Model Parameters of Partition 0, Name: No Name Provided, Type of Data: DNA
alpha: 0.020000
Tree-Length: 0.077163
rate A <-> C: 1.025752
rate A <-> G: 3.081519
rate A <-> T: 0.882273
rate C <-> G: 1.075203
rate C <-> T: 3.068799
rate G <-> T: 1.000000
freq pi(A): 0.305811
freq pi(C): 0.192902
freq pi(G): 0.190503
freq pi(T): 0.310784
ML search took 4372.732442 secs or 1.214648 hours
Combined Bootstrap and ML search took 9366.883561 secs or 2.601912 hours
Drawing Bootstrap Support Values on best-scoring ML tree ...
Found 1 tree in File /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.FBMGV_m20p5
Found 1 tree in File /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.FBMGV_m20p5
Program execution info written to /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_info.FBMGV_m20p5
All 200 bootstrapped trees written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bootstrap.FBMGV_m20p5
Best-scoring ML tree written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.FBMGV_m20p5
Best-scoring ML tree with support values written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bipartitions.FBMGV_m20p5
Best-scoring ML tree with support values as branch labels written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bipartitionsBranchLabels.FBMGV_m20p5
Overall execution time for full ML analysis: 9366.889394 secs or 2.601914 hours or 0.108413 days