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RAxML_info.FB_m12p5
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RAxML_info.FB_m12p5
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This is RAxML version 8.0.16 released by Alexandros Stamatakis on March 21 2014.
With greatly appreciated code contributions by:
Andre Aberer (HITS)
Simon Berger (HITS)
Alexey Kozlov (HITS)
Nick Pattengale (Sandia)
Wayne Pfeiffer (SDSC)
Akifumi S. Tanabe (NRIFS)
David Dao (KIT)
Charlie Taylor (UF)
Alignment has 45244 distinct alignment patterns
Proportion of gaps and completely undetermined characters in this alignment: 9.60%
RAxML rapid bootstrapping and subsequent ML search
Using 1 distinct models/data partitions with joint branch length optimization
Executing 200 rapid bootstrap inferences and thereafter a thorough ML search
All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units
Partition: 0
Alignment Patterns: 45244
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
RAxML was called as follows:
raxmlHPC-PTHREADS-AVX -f a -m GTRGAMMA -N 200 -x 12345 -p 12345 -T 20 -o NI,HE -w /home/deren/Documents/Oaks/Virentes/analysis_raxml/ -s analysis_pyrad/outfiles/FB_c85d6m12p5.phy -n FB_m12p5
Time for BS model parameter optimization 6.170137
Bootstrap[0]: Time 7.972013 seconds, bootstrap likelihood -2349958.824674, best rearrangement setting 13
Bootstrap[1]: Time 1.602674 seconds, bootstrap likelihood -2351437.728468, best rearrangement setting 13
Bootstrap[2]: Time 1.601430 seconds, bootstrap likelihood -2354693.134622, best rearrangement setting 12
Bootstrap[3]: Time 1.561562 seconds, bootstrap likelihood -2348585.080630, best rearrangement setting 15
Bootstrap[4]: Time 1.618044 seconds, bootstrap likelihood -2355169.507646, best rearrangement setting 10
Bootstrap[5]: Time 1.596463 seconds, bootstrap likelihood -2348895.084261, best rearrangement setting 10
Bootstrap[6]: Time 0.734954 seconds, bootstrap likelihood -2354305.860071, best rearrangement setting 6
Bootstrap[7]: Time 0.735187 seconds, bootstrap likelihood -2350387.557376, best rearrangement setting 14
Bootstrap[8]: Time 1.591060 seconds, bootstrap likelihood -2349153.128044, best rearrangement setting 5
Bootstrap[9]: Time 1.544315 seconds, bootstrap likelihood -2349866.037572, best rearrangement setting 7
Bootstrap[10]: Time 1.787252 seconds, bootstrap likelihood -2355216.333444, best rearrangement setting 7
Bootstrap[11]: Time 1.672743 seconds, bootstrap likelihood -2349766.216459, best rearrangement setting 5
Bootstrap[12]: Time 1.597607 seconds, bootstrap likelihood -2352779.901368, best rearrangement setting 8
Bootstrap[13]: Time 1.621244 seconds, bootstrap likelihood -2352680.981549, best rearrangement setting 7
Bootstrap[14]: Time 0.760599 seconds, bootstrap likelihood -2346402.009829, best rearrangement setting 12
Bootstrap[15]: Time 1.669615 seconds, bootstrap likelihood -2350263.031884, best rearrangement setting 15
Bootstrap[16]: Time 1.609723 seconds, bootstrap likelihood -2354347.826984, best rearrangement setting 12
Bootstrap[17]: Time 1.586670 seconds, bootstrap likelihood -2355548.239811, best rearrangement setting 12
Bootstrap[18]: Time 1.617622 seconds, bootstrap likelihood -2350604.276719, best rearrangement setting 5
Bootstrap[19]: Time 1.677528 seconds, bootstrap likelihood -2352672.160062, best rearrangement setting 8
Bootstrap[20]: Time 1.712649 seconds, bootstrap likelihood -2351860.868698, best rearrangement setting 10
Bootstrap[21]: Time 1.660408 seconds, bootstrap likelihood -2356665.205494, best rearrangement setting 6
Bootstrap[22]: Time 0.763928 seconds, bootstrap likelihood -2352462.521989, best rearrangement setting 5
Bootstrap[23]: Time 1.592456 seconds, bootstrap likelihood -2349184.014877, best rearrangement setting 7
Bootstrap[24]: Time 1.679986 seconds, bootstrap likelihood -2349329.358630, best rearrangement setting 8
Bootstrap[25]: Time 1.630255 seconds, bootstrap likelihood -2352168.429583, best rearrangement setting 6
Bootstrap[26]: Time 1.666664 seconds, bootstrap likelihood -2354203.773961, best rearrangement setting 12
Bootstrap[27]: Time 1.646764 seconds, bootstrap likelihood -2352309.176653, best rearrangement setting 10
Bootstrap[28]: Time 0.765892 seconds, bootstrap likelihood -2349174.365237, best rearrangement setting 11
Bootstrap[29]: Time 1.613011 seconds, bootstrap likelihood -2348718.783143, best rearrangement setting 12
Bootstrap[30]: Time 1.689559 seconds, bootstrap likelihood -2351673.687825, best rearrangement setting 15
Bootstrap[31]: Time 1.597098 seconds, bootstrap likelihood -2351062.748704, best rearrangement setting 15
Bootstrap[32]: Time 1.692883 seconds, bootstrap likelihood -2351085.996154, best rearrangement setting 6
Bootstrap[33]: Time 1.671938 seconds, bootstrap likelihood -2351108.730306, best rearrangement setting 15
Bootstrap[34]: Time 1.697771 seconds, bootstrap likelihood -2353907.129184, best rearrangement setting 11
Bootstrap[35]: Time 1.694662 seconds, bootstrap likelihood -2349725.025462, best rearrangement setting 8
Bootstrap[36]: Time 1.791673 seconds, bootstrap likelihood -2350468.853105, best rearrangement setting 9
Bootstrap[37]: Time 1.623473 seconds, bootstrap likelihood -2352747.516516, best rearrangement setting 11
Bootstrap[38]: Time 1.651831 seconds, bootstrap likelihood -2350907.970834, best rearrangement setting 8
Bootstrap[39]: Time 1.640755 seconds, bootstrap likelihood -2352188.222571, best rearrangement setting 13
Bootstrap[40]: Time 1.708962 seconds, bootstrap likelihood -2351029.026120, best rearrangement setting 13
Bootstrap[41]: Time 1.641284 seconds, bootstrap likelihood -2353266.120462, best rearrangement setting 10
Bootstrap[42]: Time 1.668744 seconds, bootstrap likelihood -2351668.517032, best rearrangement setting 5
Bootstrap[43]: Time 1.685591 seconds, bootstrap likelihood -2351388.591986, best rearrangement setting 14
Bootstrap[44]: Time 1.652764 seconds, bootstrap likelihood -2351272.762197, best rearrangement setting 10
Bootstrap[45]: Time 1.606656 seconds, bootstrap likelihood -2349461.728581, best rearrangement setting 15
Bootstrap[46]: Time 1.585122 seconds, bootstrap likelihood -2350067.510023, best rearrangement setting 14
Bootstrap[47]: Time 0.782351 seconds, bootstrap likelihood -2353733.059333, best rearrangement setting 8
Bootstrap[48]: Time 1.639129 seconds, bootstrap likelihood -2350971.892247, best rearrangement setting 6
Bootstrap[49]: Time 1.601434 seconds, bootstrap likelihood -2349845.583897, best rearrangement setting 7
Bootstrap[50]: Time 0.913166 seconds, bootstrap likelihood -2351448.381047, best rearrangement setting 7
Bootstrap[51]: Time 1.590578 seconds, bootstrap likelihood -2351785.503687, best rearrangement setting 11
Bootstrap[52]: Time 1.620135 seconds, bootstrap likelihood -2352644.175391, best rearrangement setting 12
Bootstrap[53]: Time 1.587590 seconds, bootstrap likelihood -2355028.249146, best rearrangement setting 8
Bootstrap[54]: Time 1.639187 seconds, bootstrap likelihood -2353000.929821, best rearrangement setting 9
Bootstrap[55]: Time 0.776303 seconds, bootstrap likelihood -2351259.270154, best rearrangement setting 11
Bootstrap[56]: Time 1.596022 seconds, bootstrap likelihood -2349041.123598, best rearrangement setting 5
Bootstrap[57]: Time 1.557112 seconds, bootstrap likelihood -2353027.488167, best rearrangement setting 7
Bootstrap[58]: Time 1.569447 seconds, bootstrap likelihood -2347848.843827, best rearrangement setting 10
Bootstrap[59]: Time 1.578841 seconds, bootstrap likelihood -2352374.653570, best rearrangement setting 9
Bootstrap[60]: Time 1.711489 seconds, bootstrap likelihood -2349188.241903, best rearrangement setting 7
Bootstrap[61]: Time 1.548685 seconds, bootstrap likelihood -2347852.159468, best rearrangement setting 5
Bootstrap[62]: Time 0.726236 seconds, bootstrap likelihood -2351471.883363, best rearrangement setting 11
Bootstrap[63]: Time 1.576111 seconds, bootstrap likelihood -2347525.675179, best rearrangement setting 12
Bootstrap[64]: Time 1.558399 seconds, bootstrap likelihood -2348873.295848, best rearrangement setting 7
Bootstrap[65]: Time 1.600747 seconds, bootstrap likelihood -2351503.253848, best rearrangement setting 5
Bootstrap[66]: Time 1.562671 seconds, bootstrap likelihood -2350663.944998, best rearrangement setting 5
Bootstrap[67]: Time 0.738962 seconds, bootstrap likelihood -2351996.849682, best rearrangement setting 15
Bootstrap[68]: Time 1.591594 seconds, bootstrap likelihood -2349734.978126, best rearrangement setting 11
Bootstrap[69]: Time 0.766490 seconds, bootstrap likelihood -2351540.191365, best rearrangement setting 5
Bootstrap[70]: Time 1.709822 seconds, bootstrap likelihood -2350450.662444, best rearrangement setting 8
Bootstrap[71]: Time 1.590060 seconds, bootstrap likelihood -2352286.363804, best rearrangement setting 10
Bootstrap[72]: Time 1.592471 seconds, bootstrap likelihood -2355922.959842, best rearrangement setting 11
Bootstrap[73]: Time 1.559131 seconds, bootstrap likelihood -2349162.324274, best rearrangement setting 9
Bootstrap[74]: Time 1.586336 seconds, bootstrap likelihood -2347625.126824, best rearrangement setting 5
Bootstrap[75]: Time 1.618854 seconds, bootstrap likelihood -2351560.527642, best rearrangement setting 8
Bootstrap[76]: Time 1.585666 seconds, bootstrap likelihood -2351243.442685, best rearrangement setting 9
Bootstrap[77]: Time 1.616689 seconds, bootstrap likelihood -2351943.796500, best rearrangement setting 11
Bootstrap[78]: Time 1.625020 seconds, bootstrap likelihood -2350938.527199, best rearrangement setting 15
Bootstrap[79]: Time 1.526578 seconds, bootstrap likelihood -2352969.983200, best rearrangement setting 9
Bootstrap[80]: Time 0.836399 seconds, bootstrap likelihood -2353924.390624, best rearrangement setting 15
Bootstrap[81]: Time 1.637422 seconds, bootstrap likelihood -2350100.282111, best rearrangement setting 7
Bootstrap[82]: Time 1.597848 seconds, bootstrap likelihood -2352942.788419, best rearrangement setting 6
Bootstrap[83]: Time 0.727405 seconds, bootstrap likelihood -2349742.660997, best rearrangement setting 10
Bootstrap[84]: Time 1.561268 seconds, bootstrap likelihood -2354741.477371, best rearrangement setting 11
Bootstrap[85]: Time 1.628713 seconds, bootstrap likelihood -2351977.467739, best rearrangement setting 8
Bootstrap[86]: Time 1.498535 seconds, bootstrap likelihood -2350140.017532, best rearrangement setting 7
Bootstrap[87]: Time 1.598677 seconds, bootstrap likelihood -2353784.027759, best rearrangement setting 7
Bootstrap[88]: Time 1.614987 seconds, bootstrap likelihood -2352543.045161, best rearrangement setting 12
Bootstrap[89]: Time 1.557598 seconds, bootstrap likelihood -2353422.620848, best rearrangement setting 10
Bootstrap[90]: Time 1.696512 seconds, bootstrap likelihood -2353004.605076, best rearrangement setting 8
Bootstrap[91]: Time 1.607890 seconds, bootstrap likelihood -2352250.630969, best rearrangement setting 12
Bootstrap[92]: Time 0.750176 seconds, bootstrap likelihood -2352659.337888, best rearrangement setting 13
Bootstrap[93]: Time 1.559658 seconds, bootstrap likelihood -2354054.566149, best rearrangement setting 15
Bootstrap[94]: Time 1.511617 seconds, bootstrap likelihood -2348033.715934, best rearrangement setting 5
Bootstrap[95]: Time 1.657712 seconds, bootstrap likelihood -2352031.758685, best rearrangement setting 5
Bootstrap[96]: Time 1.682853 seconds, bootstrap likelihood -2355418.643427, best rearrangement setting 13
Bootstrap[97]: Time 1.597729 seconds, bootstrap likelihood -2350529.148417, best rearrangement setting 11
Bootstrap[98]: Time 1.650553 seconds, bootstrap likelihood -2349425.732179, best rearrangement setting 6
Bootstrap[99]: Time 1.658064 seconds, bootstrap likelihood -2351980.897341, best rearrangement setting 14
Bootstrap[100]: Time 1.744342 seconds, bootstrap likelihood -2351152.590245, best rearrangement setting 12
Bootstrap[101]: Time 1.599913 seconds, bootstrap likelihood -2350070.200728, best rearrangement setting 10
Bootstrap[102]: Time 1.591292 seconds, bootstrap likelihood -2353361.874218, best rearrangement setting 8
Bootstrap[103]: Time 1.629477 seconds, bootstrap likelihood -2353880.684111, best rearrangement setting 8
Bootstrap[104]: Time 0.717388 seconds, bootstrap likelihood -2350459.705690, best rearrangement setting 15
Bootstrap[105]: Time 1.610447 seconds, bootstrap likelihood -2354329.107705, best rearrangement setting 7
Bootstrap[106]: Time 1.655323 seconds, bootstrap likelihood -2352392.332100, best rearrangement setting 6
Bootstrap[107]: Time 1.596537 seconds, bootstrap likelihood -2351871.427883, best rearrangement setting 13
Bootstrap[108]: Time 1.719956 seconds, bootstrap likelihood -2354948.188349, best rearrangement setting 14
Bootstrap[109]: Time 1.600011 seconds, bootstrap likelihood -2352304.170741, best rearrangement setting 12
Bootstrap[110]: Time 1.807045 seconds, bootstrap likelihood -2350482.410727, best rearrangement setting 7
Bootstrap[111]: Time 1.620078 seconds, bootstrap likelihood -2352918.893377, best rearrangement setting 15
Bootstrap[112]: Time 0.740533 seconds, bootstrap likelihood -2351543.760491, best rearrangement setting 14
Bootstrap[113]: Time 0.740581 seconds, bootstrap likelihood -2355016.051376, best rearrangement setting 5
Bootstrap[114]: Time 1.599017 seconds, bootstrap likelihood -2352669.389805, best rearrangement setting 6
Bootstrap[115]: Time 1.648957 seconds, bootstrap likelihood -2351897.164296, best rearrangement setting 7
Bootstrap[116]: Time 0.725714 seconds, bootstrap likelihood -2354667.467856, best rearrangement setting 11
Bootstrap[117]: Time 0.725690 seconds, bootstrap likelihood -2356043.948916, best rearrangement setting 8
Bootstrap[118]: Time 1.541147 seconds, bootstrap likelihood -2355398.444242, best rearrangement setting 9
Bootstrap[119]: Time 1.597277 seconds, bootstrap likelihood -2348373.543007, best rearrangement setting 14
Bootstrap[120]: Time 1.769481 seconds, bootstrap likelihood -2353134.758236, best rearrangement setting 12
Bootstrap[121]: Time 1.625988 seconds, bootstrap likelihood -2352003.948878, best rearrangement setting 8
Bootstrap[122]: Time 1.613474 seconds, bootstrap likelihood -2349980.235972, best rearrangement setting 9
Bootstrap[123]: Time 1.602433 seconds, bootstrap likelihood -2349380.950919, best rearrangement setting 6
Bootstrap[124]: Time 1.580699 seconds, bootstrap likelihood -2352631.054456, best rearrangement setting 11
Bootstrap[125]: Time 1.564152 seconds, bootstrap likelihood -2349599.679379, best rearrangement setting 11
Bootstrap[126]: Time 1.701582 seconds, bootstrap likelihood -2351282.680603, best rearrangement setting 12
Bootstrap[127]: Time 1.591908 seconds, bootstrap likelihood -2352892.241174, best rearrangement setting 9
Bootstrap[128]: Time 1.597467 seconds, bootstrap likelihood -2352183.869156, best rearrangement setting 11
Bootstrap[129]: Time 1.586512 seconds, bootstrap likelihood -2352111.211775, best rearrangement setting 5
Bootstrap[130]: Time 1.759429 seconds, bootstrap likelihood -2350023.308621, best rearrangement setting 10
Bootstrap[131]: Time 1.614541 seconds, bootstrap likelihood -2351875.727358, best rearrangement setting 9
Bootstrap[132]: Time 1.692114 seconds, bootstrap likelihood -2351466.740260, best rearrangement setting 14
Bootstrap[133]: Time 1.560469 seconds, bootstrap likelihood -2352313.095129, best rearrangement setting 13
Bootstrap[134]: Time 1.636377 seconds, bootstrap likelihood -2351192.701756, best rearrangement setting 6
Bootstrap[135]: Time 0.755773 seconds, bootstrap likelihood -2354416.291133, best rearrangement setting 11
Bootstrap[136]: Time 1.715389 seconds, bootstrap likelihood -2354309.452126, best rearrangement setting 13
Bootstrap[137]: Time 1.580231 seconds, bootstrap likelihood -2352933.050653, best rearrangement setting 6
Bootstrap[138]: Time 1.572906 seconds, bootstrap likelihood -2352768.413179, best rearrangement setting 15
Bootstrap[139]: Time 1.762953 seconds, bootstrap likelihood -2350326.425887, best rearrangement setting 5
Bootstrap[140]: Time 1.800131 seconds, bootstrap likelihood -2351557.477517, best rearrangement setting 13
Bootstrap[141]: Time 1.632786 seconds, bootstrap likelihood -2350671.881317, best rearrangement setting 5
Bootstrap[142]: Time 1.754471 seconds, bootstrap likelihood -2350373.483904, best rearrangement setting 15
Bootstrap[143]: Time 1.615215 seconds, bootstrap likelihood -2350361.315280, best rearrangement setting 7
Bootstrap[144]: Time 1.739383 seconds, bootstrap likelihood -2351136.910376, best rearrangement setting 13
Bootstrap[145]: Time 1.656764 seconds, bootstrap likelihood -2353410.899548, best rearrangement setting 7
Bootstrap[146]: Time 1.539840 seconds, bootstrap likelihood -2354997.757076, best rearrangement setting 9
Bootstrap[147]: Time 1.645214 seconds, bootstrap likelihood -2355601.909086, best rearrangement setting 12
Bootstrap[148]: Time 1.626698 seconds, bootstrap likelihood -2352124.289168, best rearrangement setting 8
Bootstrap[149]: Time 1.622401 seconds, bootstrap likelihood -2352171.347805, best rearrangement setting 12
Bootstrap[150]: Time 1.636244 seconds, bootstrap likelihood -2351492.316846, best rearrangement setting 14
Bootstrap[151]: Time 1.645387 seconds, bootstrap likelihood -2352209.716079, best rearrangement setting 5
Bootstrap[152]: Time 0.872035 seconds, bootstrap likelihood -2353179.782643, best rearrangement setting 5
Bootstrap[153]: Time 1.738119 seconds, bootstrap likelihood -2353532.695498, best rearrangement setting 13
Bootstrap[154]: Time 1.788312 seconds, bootstrap likelihood -2349048.083236, best rearrangement setting 14
Bootstrap[155]: Time 1.615590 seconds, bootstrap likelihood -2353586.209362, best rearrangement setting 13
Bootstrap[156]: Time 1.588736 seconds, bootstrap likelihood -2349263.430747, best rearrangement setting 11
Bootstrap[157]: Time 1.656587 seconds, bootstrap likelihood -2353415.469618, best rearrangement setting 8
Bootstrap[158]: Time 0.773857 seconds, bootstrap likelihood -2353456.504527, best rearrangement setting 8
Bootstrap[159]: Time 1.649669 seconds, bootstrap likelihood -2351881.057432, best rearrangement setting 5
Bootstrap[160]: Time 1.734525 seconds, bootstrap likelihood -2354422.998584, best rearrangement setting 15
Bootstrap[161]: Time 0.740674 seconds, bootstrap likelihood -2350114.060454, best rearrangement setting 13
Bootstrap[162]: Time 0.780109 seconds, bootstrap likelihood -2354086.938284, best rearrangement setting 13
Bootstrap[163]: Time 1.697113 seconds, bootstrap likelihood -2355000.595161, best rearrangement setting 12
Bootstrap[164]: Time 1.588710 seconds, bootstrap likelihood -2350054.392425, best rearrangement setting 7
Bootstrap[165]: Time 1.647932 seconds, bootstrap likelihood -2349995.813902, best rearrangement setting 13
Bootstrap[166]: Time 1.698655 seconds, bootstrap likelihood -2350856.004685, best rearrangement setting 10
Bootstrap[167]: Time 1.857695 seconds, bootstrap likelihood -2347885.360832, best rearrangement setting 12
Bootstrap[168]: Time 1.722801 seconds, bootstrap likelihood -2345984.860506, best rearrangement setting 14
Bootstrap[169]: Time 0.791102 seconds, bootstrap likelihood -2353117.425343, best rearrangement setting 10
Bootstrap[170]: Time 1.640160 seconds, bootstrap likelihood -2349736.087066, best rearrangement setting 5
Bootstrap[171]: Time 1.632069 seconds, bootstrap likelihood -2349984.841184, best rearrangement setting 11
Bootstrap[172]: Time 1.630303 seconds, bootstrap likelihood -2350630.773305, best rearrangement setting 12
Bootstrap[173]: Time 1.597518 seconds, bootstrap likelihood -2348097.952922, best rearrangement setting 11
Bootstrap[174]: Time 1.641701 seconds, bootstrap likelihood -2354007.378338, best rearrangement setting 15
Bootstrap[175]: Time 1.692218 seconds, bootstrap likelihood -2353175.282905, best rearrangement setting 14
Bootstrap[176]: Time 0.764690 seconds, bootstrap likelihood -2354373.491753, best rearrangement setting 8
Bootstrap[177]: Time 1.598651 seconds, bootstrap likelihood -2351801.323819, best rearrangement setting 8
Bootstrap[178]: Time 1.573383 seconds, bootstrap likelihood -2350039.227847, best rearrangement setting 14
Bootstrap[179]: Time 1.575323 seconds, bootstrap likelihood -2352207.624622, best rearrangement setting 5
Bootstrap[180]: Time 1.740639 seconds, bootstrap likelihood -2351825.799567, best rearrangement setting 12
Bootstrap[181]: Time 1.604268 seconds, bootstrap likelihood -2350232.309339, best rearrangement setting 14
Bootstrap[182]: Time 1.564790 seconds, bootstrap likelihood -2346637.339562, best rearrangement setting 7
Bootstrap[183]: Time 1.600328 seconds, bootstrap likelihood -2351568.954002, best rearrangement setting 11
Bootstrap[184]: Time 1.639786 seconds, bootstrap likelihood -2352770.220966, best rearrangement setting 15
Bootstrap[185]: Time 1.603691 seconds, bootstrap likelihood -2352226.856388, best rearrangement setting 8
Bootstrap[186]: Time 1.569243 seconds, bootstrap likelihood -2350625.105560, best rearrangement setting 13
Bootstrap[187]: Time 1.575029 seconds, bootstrap likelihood -2351559.753405, best rearrangement setting 8
Bootstrap[188]: Time 1.610097 seconds, bootstrap likelihood -2353049.648525, best rearrangement setting 12
Bootstrap[189]: Time 1.628410 seconds, bootstrap likelihood -2355833.404508, best rearrangement setting 11
Bootstrap[190]: Time 1.689466 seconds, bootstrap likelihood -2348737.898784, best rearrangement setting 15
Bootstrap[191]: Time 1.548739 seconds, bootstrap likelihood -2351300.420226, best rearrangement setting 8
Bootstrap[192]: Time 1.624833 seconds, bootstrap likelihood -2352977.930935, best rearrangement setting 8
Bootstrap[193]: Time 1.574305 seconds, bootstrap likelihood -2354193.157558, best rearrangement setting 10
Bootstrap[194]: Time 1.600392 seconds, bootstrap likelihood -2351078.040726, best rearrangement setting 8
Bootstrap[195]: Time 1.589329 seconds, bootstrap likelihood -2350756.331167, best rearrangement setting 7
Bootstrap[196]: Time 0.743536 seconds, bootstrap likelihood -2350361.754180, best rearrangement setting 11
Bootstrap[197]: Time 1.584722 seconds, bootstrap likelihood -2351268.404474, best rearrangement setting 8
Bootstrap[198]: Time 1.660014 seconds, bootstrap likelihood -2350162.863814, best rearrangement setting 15
Bootstrap[199]: Time 1.529922 seconds, bootstrap likelihood -2351935.987543, best rearrangement setting 8
Overall Time for 200 Rapid Bootstraps 314.417487 seconds
Average Time per Rapid Bootstrap 1.572087 seconds
Starting ML Search ...
Fast ML optimization finished
Fast ML search Time: 199.168784 seconds
Slow ML Search 0 Likelihood: -2351794.538088
Slow ML Search 1 Likelihood: -2351794.538105
Slow ML Search 2 Likelihood: -2351794.538096
Slow ML Search 3 Likelihood: -2351794.538079
Slow ML Search 4 Likelihood: -2351794.538096
Slow ML Search 5 Likelihood: -2351794.538080
Slow ML Search 6 Likelihood: -2351794.538107
Slow ML Search 7 Likelihood: -2351794.538080
Slow ML Search 8 Likelihood: -2351794.538089
Slow ML Search 9 Likelihood: -2351794.538094
Slow ML optimization finished
Slow ML search Time: 27.950493 seconds
Thorough ML search Time: 14.164462 seconds
Final ML Optimization Likelihood: -2351794.538072
Model Information:
Model Parameters of Partition 0, Name: No Name Provided, Type of Data: DNA
alpha: 0.020000
Tree-Length: 0.058737
rate A <-> C: 1.033447
rate A <-> G: 3.154752
rate A <-> T: 0.927153
rate C <-> G: 1.019777
rate C <-> T: 3.131364
rate G <-> T: 1.000000
freq pi(A): 0.306827
freq pi(C): 0.193358
freq pi(G): 0.190429
freq pi(T): 0.309385
ML search took 241.285214 secs or 0.067024 hours
Combined Bootstrap and ML search took 555.702756 secs or 0.154362 hours
Drawing Bootstrap Support Values on best-scoring ML tree ...
Found 1 tree in File /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.FB_m12p5
Found 1 tree in File /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.FB_m12p5
Program execution info written to /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_info.FB_m12p5
All 200 bootstrapped trees written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bootstrap.FB_m12p5
Best-scoring ML tree written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.FB_m12p5
Best-scoring ML tree with support values written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bipartitions.FB_m12p5
Best-scoring ML tree with support values as branch labels written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bipartitionsBranchLabels.FB_m12p5
Overall execution time for full ML analysis: 555.704945 secs or 0.154362 hours or 0.006432 days