/
RAxML_info.OSMGV_m4p5
319 lines (270 loc) · 24.8 KB
/
RAxML_info.OSMGV_m4p5
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
This is RAxML version 8.0.16 released by Alexandros Stamatakis on March 21 2014.
With greatly appreciated code contributions by:
Andre Aberer (HITS)
Simon Berger (HITS)
Alexey Kozlov (HITS)
Nick Pattengale (Sandia)
Wayne Pfeiffer (SDSC)
Akifumi S. Tanabe (NRIFS)
David Dao (KIT)
Charlie Taylor (UF)
Alignment has 825661 distinct alignment patterns
Proportion of gaps and completely undetermined characters in this alignment: 52.11%
RAxML rapid bootstrapping and subsequent ML search
Using 1 distinct models/data partitions with joint branch length optimization
Executing 200 rapid bootstrap inferences and thereafter a thorough ML search
All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units
Partition: 0
Alignment Patterns: 825661
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
RAxML was called as follows:
raxmlHPC-PTHREADS-AVX -f a -m GTRGAMMA -N 200 -x 12345 -p 12345 -T 20 -o NI,HE -w /home/deren/Documents/Oaks/Virentes/analysis_raxml/ -s analysis_pyrad/outfiles/OSMGV_c85d6m4p5.phy -n OSMGV_m4p5
Time for BS model parameter optimization 426.653137
Bootstrap[0]: Time 679.255735 seconds, bootstrap likelihood -12425928.430682, best rearrangement setting 13
Bootstrap[1]: Time 242.992257 seconds, bootstrap likelihood -12430043.443802, best rearrangement setting 13
Bootstrap[2]: Time 235.156790 seconds, bootstrap likelihood -12420964.072294, best rearrangement setting 12
Bootstrap[3]: Time 124.099730 seconds, bootstrap likelihood -12426004.668258, best rearrangement setting 15
Bootstrap[4]: Time 239.119950 seconds, bootstrap likelihood -12439328.934981, best rearrangement setting 10
Bootstrap[5]: Time 242.760819 seconds, bootstrap likelihood -12427185.326525, best rearrangement setting 10
Bootstrap[6]: Time 257.356809 seconds, bootstrap likelihood -12428621.156842, best rearrangement setting 6
Bootstrap[7]: Time 249.444679 seconds, bootstrap likelihood -12427389.502657, best rearrangement setting 14
Bootstrap[8]: Time 248.050298 seconds, bootstrap likelihood -12412043.570725, best rearrangement setting 5
Bootstrap[9]: Time 115.028061 seconds, bootstrap likelihood -12425502.275993, best rearrangement setting 7
Bootstrap[10]: Time 256.193403 seconds, bootstrap likelihood -12423970.614543, best rearrangement setting 7
Bootstrap[11]: Time 258.549102 seconds, bootstrap likelihood -12425388.051350, best rearrangement setting 5
Bootstrap[12]: Time 272.899106 seconds, bootstrap likelihood -12418803.977487, best rearrangement setting 8
Bootstrap[13]: Time 277.231731 seconds, bootstrap likelihood -12422798.903395, best rearrangement setting 7
Bootstrap[14]: Time 259.029213 seconds, bootstrap likelihood -12432533.688738, best rearrangement setting 12
Bootstrap[15]: Time 245.869319 seconds, bootstrap likelihood -12428215.178147, best rearrangement setting 15
Bootstrap[16]: Time 243.104297 seconds, bootstrap likelihood -12424537.554746, best rearrangement setting 12
Bootstrap[17]: Time 235.353712 seconds, bootstrap likelihood -12418258.742241, best rearrangement setting 12
Bootstrap[18]: Time 221.666708 seconds, bootstrap likelihood -12427204.254118, best rearrangement setting 5
Bootstrap[19]: Time 109.609524 seconds, bootstrap likelihood -12420187.864976, best rearrangement setting 8
Bootstrap[20]: Time 248.932015 seconds, bootstrap likelihood -12421654.148808, best rearrangement setting 10
Bootstrap[21]: Time 250.379140 seconds, bootstrap likelihood -12428775.824670, best rearrangement setting 6
Bootstrap[22]: Time 246.697521 seconds, bootstrap likelihood -12428697.500659, best rearrangement setting 5
Bootstrap[23]: Time 261.217445 seconds, bootstrap likelihood -12421381.084449, best rearrangement setting 7
Bootstrap[24]: Time 243.074698 seconds, bootstrap likelihood -12418676.601404, best rearrangement setting 8
Bootstrap[25]: Time 242.484591 seconds, bootstrap likelihood -12425144.176328, best rearrangement setting 6
Bootstrap[26]: Time 242.921695 seconds, bootstrap likelihood -12434442.799285, best rearrangement setting 12
Bootstrap[27]: Time 237.441810 seconds, bootstrap likelihood -12426548.827805, best rearrangement setting 10
Bootstrap[28]: Time 241.014107 seconds, bootstrap likelihood -12428229.827579, best rearrangement setting 11
Bootstrap[29]: Time 242.402744 seconds, bootstrap likelihood -12436486.542084, best rearrangement setting 12
Bootstrap[30]: Time 240.795965 seconds, bootstrap likelihood -12429638.118893, best rearrangement setting 15
Bootstrap[31]: Time 245.900182 seconds, bootstrap likelihood -12429997.118585, best rearrangement setting 15
Bootstrap[32]: Time 119.535463 seconds, bootstrap likelihood -12429399.825389, best rearrangement setting 6
Bootstrap[33]: Time 244.552522 seconds, bootstrap likelihood -12420493.890872, best rearrangement setting 15
Bootstrap[34]: Time 236.680979 seconds, bootstrap likelihood -12427790.303226, best rearrangement setting 11
Bootstrap[35]: Time 235.329934 seconds, bootstrap likelihood -12424988.608636, best rearrangement setting 8
Bootstrap[36]: Time 122.064851 seconds, bootstrap likelihood -12432083.503010, best rearrangement setting 9
Bootstrap[37]: Time 246.204292 seconds, bootstrap likelihood -12432938.025625, best rearrangement setting 11
Bootstrap[38]: Time 240.780446 seconds, bootstrap likelihood -12425498.281437, best rearrangement setting 8
Bootstrap[39]: Time 242.046500 seconds, bootstrap likelihood -12431285.878368, best rearrangement setting 13
Bootstrap[40]: Time 235.825116 seconds, bootstrap likelihood -12424653.624137, best rearrangement setting 13
Bootstrap[41]: Time 239.510779 seconds, bootstrap likelihood -12430895.050096, best rearrangement setting 10
Bootstrap[42]: Time 232.317388 seconds, bootstrap likelihood -12423563.244941, best rearrangement setting 5
Bootstrap[43]: Time 115.726385 seconds, bootstrap likelihood -12427057.554258, best rearrangement setting 14
Bootstrap[44]: Time 110.514560 seconds, bootstrap likelihood -12421646.890865, best rearrangement setting 10
Bootstrap[45]: Time 239.977848 seconds, bootstrap likelihood -12435040.423149, best rearrangement setting 15
Bootstrap[46]: Time 237.138760 seconds, bootstrap likelihood -12416478.566462, best rearrangement setting 14
Bootstrap[47]: Time 233.782922 seconds, bootstrap likelihood -12424597.800131, best rearrangement setting 8
Bootstrap[48]: Time 237.781547 seconds, bootstrap likelihood -12422560.503477, best rearrangement setting 6
Bootstrap[49]: Time 237.033719 seconds, bootstrap likelihood -12422646.650547, best rearrangement setting 7
Bootstrap[50]: Time 232.430158 seconds, bootstrap likelihood -12424736.358044, best rearrangement setting 7
Bootstrap[51]: Time 237.895554 seconds, bootstrap likelihood -12427776.436805, best rearrangement setting 11
Bootstrap[52]: Time 249.300577 seconds, bootstrap likelihood -12432799.613217, best rearrangement setting 12
Bootstrap[53]: Time 240.265422 seconds, bootstrap likelihood -12430481.116281, best rearrangement setting 8
Bootstrap[54]: Time 238.777359 seconds, bootstrap likelihood -12419713.130951, best rearrangement setting 9
Bootstrap[55]: Time 245.075984 seconds, bootstrap likelihood -12422853.726964, best rearrangement setting 11
Bootstrap[56]: Time 121.114462 seconds, bootstrap likelihood -12433088.779812, best rearrangement setting 5
Bootstrap[57]: Time 239.607416 seconds, bootstrap likelihood -12428663.122902, best rearrangement setting 7
Bootstrap[58]: Time 228.437046 seconds, bootstrap likelihood -12431694.667252, best rearrangement setting 10
Bootstrap[59]: Time 251.612416 seconds, bootstrap likelihood -12423275.159235, best rearrangement setting 9
Bootstrap[60]: Time 254.667007 seconds, bootstrap likelihood -12409359.621259, best rearrangement setting 7
Bootstrap[61]: Time 218.345565 seconds, bootstrap likelihood -12428045.879502, best rearrangement setting 5
Bootstrap[62]: Time 110.019933 seconds, bootstrap likelihood -12425479.984041, best rearrangement setting 11
Bootstrap[63]: Time 111.440196 seconds, bootstrap likelihood -12426304.981704, best rearrangement setting 12
Bootstrap[64]: Time 109.282830 seconds, bootstrap likelihood -12422319.674276, best rearrangement setting 7
Bootstrap[65]: Time 105.934927 seconds, bootstrap likelihood -12427421.884197, best rearrangement setting 5
Bootstrap[66]: Time 224.415783 seconds, bootstrap likelihood -12428126.477021, best rearrangement setting 5
Bootstrap[67]: Time 239.620896 seconds, bootstrap likelihood -12431321.847240, best rearrangement setting 15
Bootstrap[68]: Time 226.726318 seconds, bootstrap likelihood -12422612.396786, best rearrangement setting 11
Bootstrap[69]: Time 229.367551 seconds, bootstrap likelihood -12439914.810505, best rearrangement setting 5
Bootstrap[70]: Time 233.928607 seconds, bootstrap likelihood -12418283.503101, best rearrangement setting 8
Bootstrap[71]: Time 242.365615 seconds, bootstrap likelihood -12433897.140187, best rearrangement setting 10
Bootstrap[72]: Time 227.239610 seconds, bootstrap likelihood -12414101.356060, best rearrangement setting 11
Bootstrap[73]: Time 111.368662 seconds, bootstrap likelihood -12419510.564054, best rearrangement setting 9
Bootstrap[74]: Time 114.545741 seconds, bootstrap likelihood -12426658.832203, best rearrangement setting 5
Bootstrap[75]: Time 227.394152 seconds, bootstrap likelihood -12419509.883106, best rearrangement setting 8
Bootstrap[76]: Time 222.472504 seconds, bootstrap likelihood -12412462.135733, best rearrangement setting 9
Bootstrap[77]: Time 221.175781 seconds, bootstrap likelihood -12430635.866684, best rearrangement setting 11
Bootstrap[78]: Time 222.323617 seconds, bootstrap likelihood -12434954.900122, best rearrangement setting 15
Bootstrap[79]: Time 231.403820 seconds, bootstrap likelihood -12430420.648794, best rearrangement setting 9
Bootstrap[80]: Time 241.164618 seconds, bootstrap likelihood -12424002.758591, best rearrangement setting 15
Bootstrap[81]: Time 223.240987 seconds, bootstrap likelihood -12429389.101812, best rearrangement setting 7
Bootstrap[82]: Time 227.077728 seconds, bootstrap likelihood -12428858.352221, best rearrangement setting 6
Bootstrap[83]: Time 224.694417 seconds, bootstrap likelihood -12418738.451633, best rearrangement setting 10
Bootstrap[84]: Time 231.427767 seconds, bootstrap likelihood -12429838.880392, best rearrangement setting 11
Bootstrap[85]: Time 233.618200 seconds, bootstrap likelihood -12430170.628942, best rearrangement setting 8
Bootstrap[86]: Time 221.849951 seconds, bootstrap likelihood -12423681.847875, best rearrangement setting 7
Bootstrap[87]: Time 233.656028 seconds, bootstrap likelihood -12426225.317039, best rearrangement setting 7
Bootstrap[88]: Time 230.349330 seconds, bootstrap likelihood -12415018.979875, best rearrangement setting 12
Bootstrap[89]: Time 119.961870 seconds, bootstrap likelihood -12417108.895693, best rearrangement setting 10
Bootstrap[90]: Time 260.406106 seconds, bootstrap likelihood -12423193.598294, best rearrangement setting 8
Bootstrap[91]: Time 242.075832 seconds, bootstrap likelihood -12423166.716869, best rearrangement setting 12
Bootstrap[92]: Time 224.285495 seconds, bootstrap likelihood -12423757.413209, best rearrangement setting 13
Bootstrap[93]: Time 225.303134 seconds, bootstrap likelihood -12426141.983427, best rearrangement setting 15
Bootstrap[94]: Time 211.370375 seconds, bootstrap likelihood -12424060.293190, best rearrangement setting 5
Bootstrap[95]: Time 105.598712 seconds, bootstrap likelihood -12426154.893298, best rearrangement setting 5
Bootstrap[96]: Time 227.264841 seconds, bootstrap likelihood -12425125.273871, best rearrangement setting 13
Bootstrap[97]: Time 238.399731 seconds, bootstrap likelihood -12419955.974421, best rearrangement setting 11
Bootstrap[98]: Time 111.062167 seconds, bootstrap likelihood -12420872.295000, best rearrangement setting 6
Bootstrap[99]: Time 228.846610 seconds, bootstrap likelihood -12432016.239292, best rearrangement setting 14
Bootstrap[100]: Time 235.690384 seconds, bootstrap likelihood -12421716.364752, best rearrangement setting 12
Bootstrap[101]: Time 108.409678 seconds, bootstrap likelihood -12434495.882430, best rearrangement setting 10
Bootstrap[102]: Time 220.930223 seconds, bootstrap likelihood -12425613.151182, best rearrangement setting 8
Bootstrap[103]: Time 240.479687 seconds, bootstrap likelihood -12429973.724989, best rearrangement setting 8
Bootstrap[104]: Time 237.094406 seconds, bootstrap likelihood -12436309.385217, best rearrangement setting 15
Bootstrap[105]: Time 218.783622 seconds, bootstrap likelihood -12429629.977638, best rearrangement setting 7
Bootstrap[106]: Time 222.062533 seconds, bootstrap likelihood -12427205.114672, best rearrangement setting 6
Bootstrap[107]: Time 216.983304 seconds, bootstrap likelihood -12433512.802875, best rearrangement setting 13
Bootstrap[108]: Time 225.059736 seconds, bootstrap likelihood -12422067.421786, best rearrangement setting 14
Bootstrap[109]: Time 248.160888 seconds, bootstrap likelihood -12435499.518572, best rearrangement setting 12
Bootstrap[110]: Time 262.864301 seconds, bootstrap likelihood -12420310.167231, best rearrangement setting 7
Bootstrap[111]: Time 241.037344 seconds, bootstrap likelihood -12415962.267236, best rearrangement setting 15
Bootstrap[112]: Time 233.358779 seconds, bootstrap likelihood -12429551.656724, best rearrangement setting 14
Bootstrap[113]: Time 228.268487 seconds, bootstrap likelihood -12425638.610573, best rearrangement setting 5
Bootstrap[114]: Time 236.012117 seconds, bootstrap likelihood -12429428.466961, best rearrangement setting 6
Bootstrap[115]: Time 236.163045 seconds, bootstrap likelihood -12423834.726874, best rearrangement setting 7
Bootstrap[116]: Time 231.422955 seconds, bootstrap likelihood -12433211.810498, best rearrangement setting 11
Bootstrap[117]: Time 236.778638 seconds, bootstrap likelihood -12442563.167276, best rearrangement setting 8
Bootstrap[118]: Time 253.183655 seconds, bootstrap likelihood -12420185.247740, best rearrangement setting 9
Bootstrap[119]: Time 228.543038 seconds, bootstrap likelihood -12430258.453100, best rearrangement setting 14
Bootstrap[120]: Time 233.649322 seconds, bootstrap likelihood -12420349.485769, best rearrangement setting 12
Bootstrap[121]: Time 256.972581 seconds, bootstrap likelihood -12424128.183631, best rearrangement setting 8
Bootstrap[122]: Time 228.755496 seconds, bootstrap likelihood -12430911.464428, best rearrangement setting 9
Bootstrap[123]: Time 226.614514 seconds, bootstrap likelihood -12427115.230922, best rearrangement setting 6
Bootstrap[124]: Time 237.051452 seconds, bootstrap likelihood -12423863.019106, best rearrangement setting 11
Bootstrap[125]: Time 239.602110 seconds, bootstrap likelihood -12429462.230245, best rearrangement setting 11
Bootstrap[126]: Time 246.735924 seconds, bootstrap likelihood -12422214.305504, best rearrangement setting 12
Bootstrap[127]: Time 249.687101 seconds, bootstrap likelihood -12427468.751176, best rearrangement setting 9
Bootstrap[128]: Time 230.848928 seconds, bootstrap likelihood -12425997.970638, best rearrangement setting 11
Bootstrap[129]: Time 228.161562 seconds, bootstrap likelihood -12436726.216185, best rearrangement setting 5
Bootstrap[130]: Time 238.209967 seconds, bootstrap likelihood -12428404.839925, best rearrangement setting 10
Bootstrap[131]: Time 242.872521 seconds, bootstrap likelihood -12424392.994506, best rearrangement setting 9
Bootstrap[132]: Time 256.392672 seconds, bootstrap likelihood -12431436.060260, best rearrangement setting 14
Bootstrap[133]: Time 245.251456 seconds, bootstrap likelihood -12431615.662077, best rearrangement setting 13
Bootstrap[134]: Time 114.849229 seconds, bootstrap likelihood -12417978.989662, best rearrangement setting 6
Bootstrap[135]: Time 236.344480 seconds, bootstrap likelihood -12429857.128825, best rearrangement setting 11
Bootstrap[136]: Time 242.904230 seconds, bootstrap likelihood -12420578.995371, best rearrangement setting 13
Bootstrap[137]: Time 107.423711 seconds, bootstrap likelihood -12427517.158469, best rearrangement setting 6
Bootstrap[138]: Time 227.294032 seconds, bootstrap likelihood -12432076.211419, best rearrangement setting 15
Bootstrap[139]: Time 231.577879 seconds, bootstrap likelihood -12417084.389548, best rearrangement setting 5
Bootstrap[140]: Time 258.318444 seconds, bootstrap likelihood -12424672.817113, best rearrangement setting 13
Bootstrap[141]: Time 235.554917 seconds, bootstrap likelihood -12432684.886368, best rearrangement setting 5
Bootstrap[142]: Time 259.511195 seconds, bootstrap likelihood -12429129.196531, best rearrangement setting 15
Bootstrap[143]: Time 265.810879 seconds, bootstrap likelihood -12423425.289332, best rearrangement setting 7
Bootstrap[144]: Time 258.261418 seconds, bootstrap likelihood -12431988.260605, best rearrangement setting 13
Bootstrap[145]: Time 264.930521 seconds, bootstrap likelihood -12431891.094015, best rearrangement setting 7
Bootstrap[146]: Time 245.546404 seconds, bootstrap likelihood -12434859.298853, best rearrangement setting 9
Bootstrap[147]: Time 114.443413 seconds, bootstrap likelihood -12429964.011360, best rearrangement setting 12
Bootstrap[148]: Time 232.937664 seconds, bootstrap likelihood -12430081.888916, best rearrangement setting 8
Bootstrap[149]: Time 228.317655 seconds, bootstrap likelihood -12426257.542089, best rearrangement setting 12
Bootstrap[150]: Time 224.623744 seconds, bootstrap likelihood -12427336.336127, best rearrangement setting 14
Bootstrap[151]: Time 104.487545 seconds, bootstrap likelihood -12429877.635016, best rearrangement setting 5
Bootstrap[152]: Time 106.961047 seconds, bootstrap likelihood -12431008.686969, best rearrangement setting 5
Bootstrap[153]: Time 245.883852 seconds, bootstrap likelihood -12431389.349524, best rearrangement setting 13
Bootstrap[154]: Time 241.341443 seconds, bootstrap likelihood -12424854.853880, best rearrangement setting 14
Bootstrap[155]: Time 225.858877 seconds, bootstrap likelihood -12426579.638453, best rearrangement setting 13
Bootstrap[156]: Time 225.887650 seconds, bootstrap likelihood -12421953.117918, best rearrangement setting 11
Bootstrap[157]: Time 232.943606 seconds, bootstrap likelihood -12435662.708373, best rearrangement setting 8
Bootstrap[158]: Time 111.158024 seconds, bootstrap likelihood -12420485.678786, best rearrangement setting 8
Bootstrap[159]: Time 229.351120 seconds, bootstrap likelihood -12428132.688661, best rearrangement setting 5
Bootstrap[160]: Time 254.182644 seconds, bootstrap likelihood -12436003.989411, best rearrangement setting 15
Bootstrap[161]: Time 111.450937 seconds, bootstrap likelihood -12428272.496879, best rearrangement setting 13
Bootstrap[162]: Time 236.006901 seconds, bootstrap likelihood -12423504.743945, best rearrangement setting 13
Bootstrap[163]: Time 238.330153 seconds, bootstrap likelihood -12430443.590982, best rearrangement setting 12
Bootstrap[164]: Time 230.186250 seconds, bootstrap likelihood -12414208.067935, best rearrangement setting 7
Bootstrap[165]: Time 228.409870 seconds, bootstrap likelihood -12423752.662039, best rearrangement setting 13
Bootstrap[166]: Time 237.808412 seconds, bootstrap likelihood -12423091.494687, best rearrangement setting 10
Bootstrap[167]: Time 257.044518 seconds, bootstrap likelihood -12423847.751958, best rearrangement setting 12
Bootstrap[168]: Time 267.897967 seconds, bootstrap likelihood -12422794.999262, best rearrangement setting 14
Bootstrap[169]: Time 264.285626 seconds, bootstrap likelihood -12423779.942227, best rearrangement setting 10
Bootstrap[170]: Time 248.442779 seconds, bootstrap likelihood -12433837.555557, best rearrangement setting 5
Bootstrap[171]: Time 238.484503 seconds, bootstrap likelihood -12422389.161818, best rearrangement setting 11
Bootstrap[172]: Time 232.234236 seconds, bootstrap likelihood -12424557.111658, best rearrangement setting 12
Bootstrap[173]: Time 231.600307 seconds, bootstrap likelihood -12420886.392101, best rearrangement setting 11
Bootstrap[174]: Time 225.701335 seconds, bootstrap likelihood -12423498.368456, best rearrangement setting 15
Bootstrap[175]: Time 107.329916 seconds, bootstrap likelihood -12419838.326587, best rearrangement setting 14
Bootstrap[176]: Time 224.914288 seconds, bootstrap likelihood -12426369.678458, best rearrangement setting 8
Bootstrap[177]: Time 225.167148 seconds, bootstrap likelihood -12423784.138354, best rearrangement setting 8
Bootstrap[178]: Time 233.963452 seconds, bootstrap likelihood -12429726.302753, best rearrangement setting 14
Bootstrap[179]: Time 249.924699 seconds, bootstrap likelihood -12422875.281671, best rearrangement setting 5
Bootstrap[180]: Time 242.933691 seconds, bootstrap likelihood -12419649.076894, best rearrangement setting 12
Bootstrap[181]: Time 241.150860 seconds, bootstrap likelihood -12427611.042873, best rearrangement setting 14
Bootstrap[182]: Time 229.354106 seconds, bootstrap likelihood -12434729.612565, best rearrangement setting 7
Bootstrap[183]: Time 108.999329 seconds, bootstrap likelihood -12427600.232850, best rearrangement setting 11
Bootstrap[184]: Time 240.575909 seconds, bootstrap likelihood -12426438.489162, best rearrangement setting 15
Bootstrap[185]: Time 236.045778 seconds, bootstrap likelihood -12435535.590692, best rearrangement setting 8
Bootstrap[186]: Time 110.224106 seconds, bootstrap likelihood -12427757.278733, best rearrangement setting 13
Bootstrap[187]: Time 225.261999 seconds, bootstrap likelihood -12431005.532994, best rearrangement setting 8
Bootstrap[188]: Time 229.404705 seconds, bootstrap likelihood -12429193.704433, best rearrangement setting 12
Bootstrap[189]: Time 231.776332 seconds, bootstrap likelihood -12418008.465819, best rearrangement setting 11
Bootstrap[190]: Time 241.336654 seconds, bootstrap likelihood -12429884.449712, best rearrangement setting 15
Bootstrap[191]: Time 234.115437 seconds, bootstrap likelihood -12427338.591406, best rearrangement setting 8
Bootstrap[192]: Time 222.223240 seconds, bootstrap likelihood -12432809.352578, best rearrangement setting 8
Bootstrap[193]: Time 224.424117 seconds, bootstrap likelihood -12428154.436707, best rearrangement setting 10
Bootstrap[194]: Time 237.493775 seconds, bootstrap likelihood -12433318.027404, best rearrangement setting 8
Bootstrap[195]: Time 248.005704 seconds, bootstrap likelihood -12425179.590025, best rearrangement setting 7
Bootstrap[196]: Time 246.024748 seconds, bootstrap likelihood -12423640.781987, best rearrangement setting 11
Bootstrap[197]: Time 236.697877 seconds, bootstrap likelihood -12431409.974675, best rearrangement setting 8
Bootstrap[198]: Time 111.171970 seconds, bootstrap likelihood -12426527.137970, best rearrangement setting 15
Bootstrap[199]: Time 222.184754 seconds, bootstrap likelihood -12422165.488281, best rearrangement setting 8
Overall Time for 200 Rapid Bootstraps 44552.335745 seconds
Average Time per Rapid Bootstrap 222.761679 seconds
Starting ML Search ...
Fast ML optimization finished
Fast ML search Time: 21812.828246 seconds
Slow ML Search 0 Likelihood: -12426576.459472
Slow ML Search 1 Likelihood: -12426576.459414
Slow ML Search 2 Likelihood: -12426576.493425
Slow ML Search 3 Likelihood: -12426576.457312
Slow ML Search 4 Likelihood: -12426576.457578
Slow ML Search 5 Likelihood: -12426576.499330
Slow ML Search 6 Likelihood: -12426576.492966
Slow ML Search 7 Likelihood: -12426576.457692
Slow ML Search 8 Likelihood: -12426576.499330
Slow ML Search 9 Likelihood: -12426576.497952
Slow ML optimization finished
Slow ML search Time: 5270.769174 seconds
Thorough ML search Time: 1185.601490 seconds
Final ML Optimization Likelihood: -12426576.451657
Model Information:
Model Parameters of Partition 0, Name: No Name Provided, Type of Data: DNA
alpha: 0.020000
Tree-Length: 0.120788
rate A <-> C: 0.993756
rate A <-> G: 3.072321
rate A <-> T: 0.927772
rate C <-> G: 1.078837
rate C <-> T: 3.086704
rate G <-> T: 1.000000
freq pi(A): 0.313064
freq pi(C): 0.187938
freq pi(G): 0.187346
freq pi(T): 0.311652
ML search took 28269.204614 secs or 7.852557 hours
Combined Bootstrap and ML search took 72821.540394 secs or 20.228206 hours
Drawing Bootstrap Support Values on best-scoring ML tree ...
Found 1 tree in File /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.OSMGV_m4p5
Found 1 tree in File /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.OSMGV_m4p5
Program execution info written to /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_info.OSMGV_m4p5
All 200 bootstrapped trees written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bootstrap.OSMGV_m4p5
Best-scoring ML tree written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.OSMGV_m4p5
Best-scoring ML tree with support values written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bipartitions.OSMGV_m4p5
Best-scoring ML tree with support values as branch labels written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bipartitionsBranchLabels.OSMGV_m4p5
Overall execution time for full ML analysis: 72821.546153 secs or 20.228207 hours or 0.842842 days