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RAxML_info.FBOS_m16p5
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RAxML_info.FBOS_m16p5
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This is RAxML version 8.0.16 released by Alexandros Stamatakis on March 21 2014.
With greatly appreciated code contributions by:
Andre Aberer (HITS)
Simon Berger (HITS)
Alexey Kozlov (HITS)
Nick Pattengale (Sandia)
Wayne Pfeiffer (SDSC)
Akifumi S. Tanabe (NRIFS)
David Dao (KIT)
Charlie Taylor (UF)
Alignment has 197800 distinct alignment patterns
Proportion of gaps and completely undetermined characters in this alignment: 17.84%
RAxML rapid bootstrapping and subsequent ML search
Using 1 distinct models/data partitions with joint branch length optimization
Executing 200 rapid bootstrap inferences and thereafter a thorough ML search
All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units
Partition: 0
Alignment Patterns: 197800
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
RAxML was called as follows:
raxmlHPC-PTHREADS-AVX -f a -m GTRGAMMA -N 200 -x 12345 -p 12345 -T 20 -o NI,HE -w /home/deren/Documents/Oaks/Virentes/analysis_raxml/ -s analysis_pyrad/outfiles/FBOS_c85d6m16p5.phy -n FBOS_m16p5
Time for BS model parameter optimization 44.544120
Bootstrap[0]: Time 58.459237 seconds, bootstrap likelihood -3594670.714532, best rearrangement setting 13
Bootstrap[1]: Time 13.185747 seconds, bootstrap likelihood -3594968.093549, best rearrangement setting 13
Bootstrap[2]: Time 13.164696 seconds, bootstrap likelihood -3596690.063292, best rearrangement setting 12
Bootstrap[3]: Time 13.127997 seconds, bootstrap likelihood -3594430.126054, best rearrangement setting 15
Bootstrap[4]: Time 13.103919 seconds, bootstrap likelihood -3595190.754328, best rearrangement setting 10
Bootstrap[5]: Time 12.874744 seconds, bootstrap likelihood -3595494.305690, best rearrangement setting 10
Bootstrap[6]: Time 13.230657 seconds, bootstrap likelihood -3588516.636571, best rearrangement setting 6
Bootstrap[7]: Time 12.997049 seconds, bootstrap likelihood -3602804.333586, best rearrangement setting 14
Bootstrap[8]: Time 13.246426 seconds, bootstrap likelihood -3596493.397887, best rearrangement setting 5
Bootstrap[9]: Time 12.901942 seconds, bootstrap likelihood -3598111.882457, best rearrangement setting 7
Bootstrap[10]: Time 13.336036 seconds, bootstrap likelihood -3596718.200121, best rearrangement setting 7
Bootstrap[11]: Time 5.596676 seconds, bootstrap likelihood -3596347.160175, best rearrangement setting 5
Bootstrap[12]: Time 12.879899 seconds, bootstrap likelihood -3596136.450504, best rearrangement setting 8
Bootstrap[13]: Time 13.154579 seconds, bootstrap likelihood -3596071.867403, best rearrangement setting 7
Bootstrap[14]: Time 12.866925 seconds, bootstrap likelihood -3594535.043263, best rearrangement setting 12
Bootstrap[15]: Time 13.330390 seconds, bootstrap likelihood -3596711.769470, best rearrangement setting 15
Bootstrap[16]: Time 12.868140 seconds, bootstrap likelihood -3599478.591265, best rearrangement setting 12
Bootstrap[17]: Time 12.998847 seconds, bootstrap likelihood -3597585.186675, best rearrangement setting 12
Bootstrap[18]: Time 13.114895 seconds, bootstrap likelihood -3594552.989068, best rearrangement setting 5
Bootstrap[19]: Time 12.909634 seconds, bootstrap likelihood -3593957.187968, best rearrangement setting 8
Bootstrap[20]: Time 5.796727 seconds, bootstrap likelihood -3593739.694673, best rearrangement setting 10
Bootstrap[21]: Time 13.008925 seconds, bootstrap likelihood -3593789.614234, best rearrangement setting 6
Bootstrap[22]: Time 12.840772 seconds, bootstrap likelihood -3594856.863877, best rearrangement setting 5
Bootstrap[23]: Time 5.555597 seconds, bootstrap likelihood -3593687.044935, best rearrangement setting 7
Bootstrap[24]: Time 12.963649 seconds, bootstrap likelihood -3596111.912672, best rearrangement setting 8
Bootstrap[25]: Time 12.935445 seconds, bootstrap likelihood -3594492.882339, best rearrangement setting 6
Bootstrap[26]: Time 13.125205 seconds, bootstrap likelihood -3594148.937407, best rearrangement setting 12
Bootstrap[27]: Time 5.649623 seconds, bootstrap likelihood -3598669.790986, best rearrangement setting 10
Bootstrap[28]: Time 13.014078 seconds, bootstrap likelihood -3597507.495673, best rearrangement setting 11
Bootstrap[29]: Time 13.017486 seconds, bootstrap likelihood -3598091.435824, best rearrangement setting 12
Bootstrap[30]: Time 13.694756 seconds, bootstrap likelihood -3593834.400594, best rearrangement setting 15
Bootstrap[31]: Time 13.227795 seconds, bootstrap likelihood -3601981.655123, best rearrangement setting 15
Bootstrap[32]: Time 5.568425 seconds, bootstrap likelihood -3596537.235218, best rearrangement setting 6
Bootstrap[33]: Time 12.734278 seconds, bootstrap likelihood -3597622.911673, best rearrangement setting 15
Bootstrap[34]: Time 13.137065 seconds, bootstrap likelihood -3599364.266904, best rearrangement setting 11
Bootstrap[35]: Time 12.980436 seconds, bootstrap likelihood -3597971.138215, best rearrangement setting 8
Bootstrap[36]: Time 12.993087 seconds, bootstrap likelihood -3599928.219309, best rearrangement setting 9
Bootstrap[37]: Time 13.072185 seconds, bootstrap likelihood -3596224.321605, best rearrangement setting 11
Bootstrap[38]: Time 12.934275 seconds, bootstrap likelihood -3593306.608450, best rearrangement setting 8
Bootstrap[39]: Time 13.138489 seconds, bootstrap likelihood -3601048.208036, best rearrangement setting 13
Bootstrap[40]: Time 13.589626 seconds, bootstrap likelihood -3603469.816215, best rearrangement setting 13
Bootstrap[41]: Time 5.588792 seconds, bootstrap likelihood -3599806.065780, best rearrangement setting 10
Bootstrap[42]: Time 12.948506 seconds, bootstrap likelihood -3591597.136676, best rearrangement setting 5
Bootstrap[43]: Time 13.012570 seconds, bootstrap likelihood -3595695.803160, best rearrangement setting 14
Bootstrap[44]: Time 13.187117 seconds, bootstrap likelihood -3593605.356259, best rearrangement setting 10
Bootstrap[45]: Time 13.156222 seconds, bootstrap likelihood -3596256.066781, best rearrangement setting 15
Bootstrap[46]: Time 13.249474 seconds, bootstrap likelihood -3597180.733913, best rearrangement setting 14
Bootstrap[47]: Time 13.341754 seconds, bootstrap likelihood -3602506.107509, best rearrangement setting 8
Bootstrap[48]: Time 12.822727 seconds, bootstrap likelihood -3604051.638892, best rearrangement setting 6
Bootstrap[49]: Time 13.099795 seconds, bootstrap likelihood -3595612.060932, best rearrangement setting 7
Bootstrap[50]: Time 13.226115 seconds, bootstrap likelihood -3601450.275260, best rearrangement setting 7
Bootstrap[51]: Time 12.949912 seconds, bootstrap likelihood -3596091.798267, best rearrangement setting 11
Bootstrap[52]: Time 12.958363 seconds, bootstrap likelihood -3596493.616779, best rearrangement setting 12
Bootstrap[53]: Time 13.290440 seconds, bootstrap likelihood -3598833.012755, best rearrangement setting 8
Bootstrap[54]: Time 13.055662 seconds, bootstrap likelihood -3595489.669268, best rearrangement setting 9
Bootstrap[55]: Time 13.015235 seconds, bootstrap likelihood -3597727.798229, best rearrangement setting 11
Bootstrap[56]: Time 12.524678 seconds, bootstrap likelihood -3595707.910178, best rearrangement setting 5
Bootstrap[57]: Time 13.174579 seconds, bootstrap likelihood -3597729.679099, best rearrangement setting 7
Bootstrap[58]: Time 13.143896 seconds, bootstrap likelihood -3596595.901523, best rearrangement setting 10
Bootstrap[59]: Time 13.157875 seconds, bootstrap likelihood -3598784.525632, best rearrangement setting 9
Bootstrap[60]: Time 5.784470 seconds, bootstrap likelihood -3592407.346900, best rearrangement setting 7
Bootstrap[61]: Time 12.917299 seconds, bootstrap likelihood -3597716.795503, best rearrangement setting 5
Bootstrap[62]: Time 13.148544 seconds, bootstrap likelihood -3599056.084603, best rearrangement setting 11
Bootstrap[63]: Time 13.154469 seconds, bootstrap likelihood -3593517.342466, best rearrangement setting 12
Bootstrap[64]: Time 12.891901 seconds, bootstrap likelihood -3595266.598197, best rearrangement setting 7
Bootstrap[65]: Time 12.945925 seconds, bootstrap likelihood -3598740.594204, best rearrangement setting 5
Bootstrap[66]: Time 12.985752 seconds, bootstrap likelihood -3596641.556498, best rearrangement setting 5
Bootstrap[67]: Time 13.261708 seconds, bootstrap likelihood -3596458.747739, best rearrangement setting 15
Bootstrap[68]: Time 12.707204 seconds, bootstrap likelihood -3590191.472932, best rearrangement setting 11
Bootstrap[69]: Time 12.870642 seconds, bootstrap likelihood -3597377.541545, best rearrangement setting 5
Bootstrap[70]: Time 13.163720 seconds, bootstrap likelihood -3596987.373364, best rearrangement setting 8
Bootstrap[71]: Time 13.010182 seconds, bootstrap likelihood -3600431.892955, best rearrangement setting 10
Bootstrap[72]: Time 12.945941 seconds, bootstrap likelihood -3594322.289982, best rearrangement setting 11
Bootstrap[73]: Time 13.398414 seconds, bootstrap likelihood -3599001.973456, best rearrangement setting 9
Bootstrap[74]: Time 13.308586 seconds, bootstrap likelihood -3599573.368494, best rearrangement setting 5
Bootstrap[75]: Time 13.049197 seconds, bootstrap likelihood -3598136.711293, best rearrangement setting 8
Bootstrap[76]: Time 13.179722 seconds, bootstrap likelihood -3594761.325570, best rearrangement setting 9
Bootstrap[77]: Time 13.119869 seconds, bootstrap likelihood -3597132.825708, best rearrangement setting 11
Bootstrap[78]: Time 12.926197 seconds, bootstrap likelihood -3596567.298112, best rearrangement setting 15
Bootstrap[79]: Time 13.126476 seconds, bootstrap likelihood -3594387.633783, best rearrangement setting 9
Bootstrap[80]: Time 13.069143 seconds, bootstrap likelihood -3595281.320022, best rearrangement setting 15
Bootstrap[81]: Time 13.122751 seconds, bootstrap likelihood -3597274.830230, best rearrangement setting 7
Bootstrap[82]: Time 12.900220 seconds, bootstrap likelihood -3595337.479390, best rearrangement setting 6
Bootstrap[83]: Time 12.874413 seconds, bootstrap likelihood -3597274.023869, best rearrangement setting 10
Bootstrap[84]: Time 13.255599 seconds, bootstrap likelihood -3591429.222719, best rearrangement setting 11
Bootstrap[85]: Time 13.514034 seconds, bootstrap likelihood -3598836.117007, best rearrangement setting 8
Bootstrap[86]: Time 13.094161 seconds, bootstrap likelihood -3595359.408199, best rearrangement setting 7
Bootstrap[87]: Time 13.157205 seconds, bootstrap likelihood -3600213.936674, best rearrangement setting 7
Bootstrap[88]: Time 12.655847 seconds, bootstrap likelihood -3598524.716678, best rearrangement setting 12
Bootstrap[89]: Time 12.854274 seconds, bootstrap likelihood -3594787.712710, best rearrangement setting 10
Bootstrap[90]: Time 13.159911 seconds, bootstrap likelihood -3597090.843929, best rearrangement setting 8
Bootstrap[91]: Time 12.645404 seconds, bootstrap likelihood -3593230.527885, best rearrangement setting 12
Bootstrap[92]: Time 12.971304 seconds, bootstrap likelihood -3596721.252475, best rearrangement setting 13
Bootstrap[93]: Time 12.781924 seconds, bootstrap likelihood -3595496.018511, best rearrangement setting 15
Bootstrap[94]: Time 12.851980 seconds, bootstrap likelihood -3591810.067234, best rearrangement setting 5
Bootstrap[95]: Time 12.781725 seconds, bootstrap likelihood -3598004.025519, best rearrangement setting 5
Bootstrap[96]: Time 13.003357 seconds, bootstrap likelihood -3596068.398861, best rearrangement setting 13
Bootstrap[97]: Time 13.175292 seconds, bootstrap likelihood -3598266.887131, best rearrangement setting 11
Bootstrap[98]: Time 13.636528 seconds, bootstrap likelihood -3589163.424859, best rearrangement setting 6
Bootstrap[99]: Time 13.275236 seconds, bootstrap likelihood -3599905.462455, best rearrangement setting 14
Bootstrap[100]: Time 5.802063 seconds, bootstrap likelihood -3597145.225806, best rearrangement setting 12
Bootstrap[101]: Time 12.975708 seconds, bootstrap likelihood -3598816.825328, best rearrangement setting 10
Bootstrap[102]: Time 13.160101 seconds, bootstrap likelihood -3595087.402786, best rearrangement setting 8
Bootstrap[103]: Time 12.966792 seconds, bootstrap likelihood -3595947.320114, best rearrangement setting 8
Bootstrap[104]: Time 13.137391 seconds, bootstrap likelihood -3596392.466842, best rearrangement setting 15
Bootstrap[105]: Time 13.137667 seconds, bootstrap likelihood -3599246.935474, best rearrangement setting 7
Bootstrap[106]: Time 12.623014 seconds, bootstrap likelihood -3593407.706169, best rearrangement setting 6
Bootstrap[107]: Time 12.869988 seconds, bootstrap likelihood -3597144.676333, best rearrangement setting 13
Bootstrap[108]: Time 13.000660 seconds, bootstrap likelihood -3594550.979199, best rearrangement setting 14
Bootstrap[109]: Time 12.955581 seconds, bootstrap likelihood -3599032.439232, best rearrangement setting 12
Bootstrap[110]: Time 13.232407 seconds, bootstrap likelihood -3599536.707548, best rearrangement setting 7
Bootstrap[111]: Time 13.171643 seconds, bootstrap likelihood -3597073.879244, best rearrangement setting 15
Bootstrap[112]: Time 12.906920 seconds, bootstrap likelihood -3600991.410906, best rearrangement setting 14
Bootstrap[113]: Time 12.808381 seconds, bootstrap likelihood -3600676.860313, best rearrangement setting 5
Bootstrap[114]: Time 13.284699 seconds, bootstrap likelihood -3590142.627686, best rearrangement setting 6
Bootstrap[115]: Time 13.031759 seconds, bootstrap likelihood -3598848.994120, best rearrangement setting 7
Bootstrap[116]: Time 13.031942 seconds, bootstrap likelihood -3595237.734809, best rearrangement setting 11
Bootstrap[117]: Time 13.298915 seconds, bootstrap likelihood -3592744.966214, best rearrangement setting 8
Bootstrap[118]: Time 13.065728 seconds, bootstrap likelihood -3601024.123248, best rearrangement setting 9
Bootstrap[119]: Time 13.000086 seconds, bootstrap likelihood -3595492.320044, best rearrangement setting 14
Bootstrap[120]: Time 13.583374 seconds, bootstrap likelihood -3595708.638501, best rearrangement setting 12
Bootstrap[121]: Time 13.475121 seconds, bootstrap likelihood -3604239.163297, best rearrangement setting 8
Bootstrap[122]: Time 13.506480 seconds, bootstrap likelihood -3598536.131229, best rearrangement setting 9
Bootstrap[123]: Time 13.015756 seconds, bootstrap likelihood -3594871.960398, best rearrangement setting 6
Bootstrap[124]: Time 12.520939 seconds, bootstrap likelihood -3598693.874159, best rearrangement setting 11
Bootstrap[125]: Time 13.162377 seconds, bootstrap likelihood -3595007.418678, best rearrangement setting 11
Bootstrap[126]: Time 13.070117 seconds, bootstrap likelihood -3597686.656020, best rearrangement setting 12
Bootstrap[127]: Time 13.008725 seconds, bootstrap likelihood -3595399.717400, best rearrangement setting 9
Bootstrap[128]: Time 12.936808 seconds, bootstrap likelihood -3591408.826793, best rearrangement setting 11
Bootstrap[129]: Time 5.635480 seconds, bootstrap likelihood -3594435.465147, best rearrangement setting 5
Bootstrap[130]: Time 13.327619 seconds, bootstrap likelihood -3594789.861395, best rearrangement setting 10
Bootstrap[131]: Time 13.336484 seconds, bootstrap likelihood -3598183.967310, best rearrangement setting 9
Bootstrap[132]: Time 12.739188 seconds, bootstrap likelihood -3594746.283700, best rearrangement setting 14
Bootstrap[133]: Time 13.276156 seconds, bootstrap likelihood -3595441.470574, best rearrangement setting 13
Bootstrap[134]: Time 12.900327 seconds, bootstrap likelihood -3596844.349597, best rearrangement setting 6
Bootstrap[135]: Time 13.112964 seconds, bootstrap likelihood -3594263.410412, best rearrangement setting 11
Bootstrap[136]: Time 12.843027 seconds, bootstrap likelihood -3592695.121419, best rearrangement setting 13
Bootstrap[137]: Time 13.038833 seconds, bootstrap likelihood -3595844.901015, best rearrangement setting 6
Bootstrap[138]: Time 5.719136 seconds, bootstrap likelihood -3596300.791240, best rearrangement setting 15
Bootstrap[139]: Time 12.755009 seconds, bootstrap likelihood -3599471.739718, best rearrangement setting 5
Bootstrap[140]: Time 5.762953 seconds, bootstrap likelihood -3598140.549073, best rearrangement setting 13
Bootstrap[141]: Time 12.744558 seconds, bootstrap likelihood -3595400.011520, best rearrangement setting 5
Bootstrap[142]: Time 12.711129 seconds, bootstrap likelihood -3598795.845748, best rearrangement setting 15
Bootstrap[143]: Time 13.299242 seconds, bootstrap likelihood -3595512.554045, best rearrangement setting 7
Bootstrap[144]: Time 13.395829 seconds, bootstrap likelihood -3597106.419760, best rearrangement setting 13
Bootstrap[145]: Time 12.836063 seconds, bootstrap likelihood -3599980.473501, best rearrangement setting 7
Bootstrap[146]: Time 13.445991 seconds, bootstrap likelihood -3594921.112446, best rearrangement setting 9
Bootstrap[147]: Time 13.073597 seconds, bootstrap likelihood -3593299.270418, best rearrangement setting 12
Bootstrap[148]: Time 13.064383 seconds, bootstrap likelihood -3595266.990104, best rearrangement setting 8
Bootstrap[149]: Time 12.791075 seconds, bootstrap likelihood -3592519.850647, best rearrangement setting 12
Bootstrap[150]: Time 13.217852 seconds, bootstrap likelihood -3601787.700245, best rearrangement setting 14
Bootstrap[151]: Time 13.227893 seconds, bootstrap likelihood -3593957.852586, best rearrangement setting 5
Bootstrap[152]: Time 12.918569 seconds, bootstrap likelihood -3594098.996466, best rearrangement setting 5
Bootstrap[153]: Time 13.134252 seconds, bootstrap likelihood -3598859.929398, best rearrangement setting 13
Bootstrap[154]: Time 13.336758 seconds, bootstrap likelihood -3600187.720752, best rearrangement setting 14
Bootstrap[155]: Time 13.381479 seconds, bootstrap likelihood -3600967.813016, best rearrangement setting 13
Bootstrap[156]: Time 13.341472 seconds, bootstrap likelihood -3590490.571425, best rearrangement setting 11
Bootstrap[157]: Time 13.198805 seconds, bootstrap likelihood -3591135.571726, best rearrangement setting 8
Bootstrap[158]: Time 13.281649 seconds, bootstrap likelihood -3599379.230832, best rearrangement setting 8
Bootstrap[159]: Time 12.875273 seconds, bootstrap likelihood -3591834.052555, best rearrangement setting 5
Bootstrap[160]: Time 13.374467 seconds, bootstrap likelihood -3596685.714135, best rearrangement setting 15
Bootstrap[161]: Time 13.394589 seconds, bootstrap likelihood -3598482.594097, best rearrangement setting 13
Bootstrap[162]: Time 12.621398 seconds, bootstrap likelihood -3595732.633451, best rearrangement setting 13
Bootstrap[163]: Time 12.969281 seconds, bootstrap likelihood -3597022.581765, best rearrangement setting 12
Bootstrap[164]: Time 13.260730 seconds, bootstrap likelihood -3593229.748455, best rearrangement setting 7
Bootstrap[165]: Time 12.990642 seconds, bootstrap likelihood -3598122.980582, best rearrangement setting 13
Bootstrap[166]: Time 13.040830 seconds, bootstrap likelihood -3596300.895007, best rearrangement setting 10
Bootstrap[167]: Time 12.942168 seconds, bootstrap likelihood -3594888.654282, best rearrangement setting 12
Bootstrap[168]: Time 13.186161 seconds, bootstrap likelihood -3596360.250783, best rearrangement setting 14
Bootstrap[169]: Time 12.898752 seconds, bootstrap likelihood -3593547.497490, best rearrangement setting 10
Bootstrap[170]: Time 13.074785 seconds, bootstrap likelihood -3592240.914788, best rearrangement setting 5
Bootstrap[171]: Time 13.102965 seconds, bootstrap likelihood -3590274.115223, best rearrangement setting 11
Bootstrap[172]: Time 12.709411 seconds, bootstrap likelihood -3599068.258342, best rearrangement setting 12
Bootstrap[173]: Time 13.194136 seconds, bootstrap likelihood -3592651.355681, best rearrangement setting 11
Bootstrap[174]: Time 12.951928 seconds, bootstrap likelihood -3600990.950032, best rearrangement setting 15
Bootstrap[175]: Time 13.054713 seconds, bootstrap likelihood -3589323.113794, best rearrangement setting 14
Bootstrap[176]: Time 12.935520 seconds, bootstrap likelihood -3600898.321188, best rearrangement setting 8
Bootstrap[177]: Time 12.779052 seconds, bootstrap likelihood -3594131.384917, best rearrangement setting 8
Bootstrap[178]: Time 13.216099 seconds, bootstrap likelihood -3594270.718923, best rearrangement setting 14
Bootstrap[179]: Time 12.816621 seconds, bootstrap likelihood -3595666.697468, best rearrangement setting 5
Bootstrap[180]: Time 13.685860 seconds, bootstrap likelihood -3592557.326225, best rearrangement setting 12
Bootstrap[181]: Time 13.092866 seconds, bootstrap likelihood -3595515.314945, best rearrangement setting 14
Bootstrap[182]: Time 13.663357 seconds, bootstrap likelihood -3594953.436537, best rearrangement setting 7
Bootstrap[183]: Time 13.279963 seconds, bootstrap likelihood -3596519.650382, best rearrangement setting 11
Bootstrap[184]: Time 12.835416 seconds, bootstrap likelihood -3594167.587527, best rearrangement setting 15
Bootstrap[185]: Time 13.198670 seconds, bootstrap likelihood -3595129.748582, best rearrangement setting 8
Bootstrap[186]: Time 12.932413 seconds, bootstrap likelihood -3598347.989786, best rearrangement setting 13
Bootstrap[187]: Time 12.996954 seconds, bootstrap likelihood -3597511.023719, best rearrangement setting 8
Bootstrap[188]: Time 13.391834 seconds, bootstrap likelihood -3596821.298414, best rearrangement setting 12
Bootstrap[189]: Time 13.167805 seconds, bootstrap likelihood -3593077.494075, best rearrangement setting 11
Bootstrap[190]: Time 13.590604 seconds, bootstrap likelihood -3597085.293667, best rearrangement setting 15
Bootstrap[191]: Time 12.996953 seconds, bootstrap likelihood -3595292.293110, best rearrangement setting 8
Bootstrap[192]: Time 13.338732 seconds, bootstrap likelihood -3604189.301735, best rearrangement setting 8
Bootstrap[193]: Time 5.593964 seconds, bootstrap likelihood -3595385.936366, best rearrangement setting 10
Bootstrap[194]: Time 13.131851 seconds, bootstrap likelihood -3595437.830029, best rearrangement setting 8
Bootstrap[195]: Time 13.230411 seconds, bootstrap likelihood -3600806.616127, best rearrangement setting 7
Bootstrap[196]: Time 12.807818 seconds, bootstrap likelihood -3599232.301705, best rearrangement setting 11
Bootstrap[197]: Time 12.857933 seconds, bootstrap likelihood -3598057.909448, best rearrangement setting 8
Bootstrap[198]: Time 13.182557 seconds, bootstrap likelihood -3600117.046068, best rearrangement setting 15
Bootstrap[199]: Time 12.993381 seconds, bootstrap likelihood -3592054.678149, best rearrangement setting 8
Overall Time for 200 Rapid Bootstraps 2589.548572 seconds
Average Time per Rapid Bootstrap 12.947743 seconds
Starting ML Search ...
Fast ML optimization finished
Fast ML search Time: 2056.448635 seconds
Slow ML Search 0 Likelihood: -3596466.262518
Slow ML Search 1 Likelihood: -3596466.263515
Slow ML Search 2 Likelihood: -3596466.262508
Slow ML Search 3 Likelihood: -3596466.263014
Slow ML Search 4 Likelihood: -3596466.263534
Slow ML Search 5 Likelihood: -3596466.263628
Slow ML Search 6 Likelihood: -3596466.263116
Slow ML Search 7 Likelihood: -3596466.263036
Slow ML Search 8 Likelihood: -3596466.263694
Slow ML Search 9 Likelihood: -3596466.263040
Slow ML optimization finished
Slow ML search Time: 427.543183 seconds
Thorough ML search Time: 119.435863 seconds
Final ML Optimization Likelihood: -3596466.262509
Model Information:
Model Parameters of Partition 0, Name: No Name Provided, Type of Data: DNA
alpha: 0.020000
Tree-Length: 0.076462
rate A <-> C: 1.013691
rate A <-> G: 3.052874
rate A <-> T: 0.900490
rate C <-> G: 1.057715
rate C <-> T: 3.060383
rate G <-> T: 1.000000
freq pi(A): 0.308154
freq pi(C): 0.191770
freq pi(G): 0.189811
freq pi(T): 0.310266
ML search took 2603.430345 secs or 0.723175 hours
Combined Bootstrap and ML search took 5192.978954 secs or 1.442494 hours
Drawing Bootstrap Support Values on best-scoring ML tree ...
Found 1 tree in File /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.FBOS_m16p5
Found 1 tree in File /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.FBOS_m16p5
Program execution info written to /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_info.FBOS_m16p5
All 200 bootstrapped trees written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bootstrap.FBOS_m16p5
Best-scoring ML tree written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.FBOS_m16p5
Best-scoring ML tree with support values written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bipartitions.FBOS_m16p5
Best-scoring ML tree with support values as branch labels written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bipartitionsBranchLabels.FBOS_m16p5
Overall execution time for full ML analysis: 5192.982376 secs or 1.442495 hours or 0.060104 days