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RAxML_info.FB_m4p5
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RAxML_info.FB_m4p5
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This is RAxML version 8.0.16 released by Alexandros Stamatakis on March 21 2014.
With greatly appreciated code contributions by:
Andre Aberer (HITS)
Simon Berger (HITS)
Alexey Kozlov (HITS)
Nick Pattengale (Sandia)
Wayne Pfeiffer (SDSC)
Akifumi S. Tanabe (NRIFS)
David Dao (KIT)
Charlie Taylor (UF)
Alignment has 326485 distinct alignment patterns
Proportion of gaps and completely undetermined characters in this alignment: 39.44%
RAxML rapid bootstrapping and subsequent ML search
Using 1 distinct models/data partitions with joint branch length optimization
Executing 200 rapid bootstrap inferences and thereafter a thorough ML search
All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units
Partition: 0
Alignment Patterns: 326485
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
RAxML was called as follows:
raxmlHPC-PTHREADS-AVX -f a -m GTRGAMMA -N 200 -x 12345 -p 12345 -T 20 -o NI,HE -w /home/deren/Documents/Oaks/Virentes/analysis_raxml/ -s analysis_pyrad/outfiles/FB_c85d6m4p5.phy -n FB_m4p5
Time for BS model parameter optimization 76.003994
Bootstrap[0]: Time 89.555577 seconds, bootstrap likelihood -10656041.982547, best rearrangement setting 13
Bootstrap[1]: Time 25.749389 seconds, bootstrap likelihood -10661049.649814, best rearrangement setting 13
Bootstrap[2]: Time 26.411791 seconds, bootstrap likelihood -10655970.429805, best rearrangement setting 12
Bootstrap[3]: Time 11.863274 seconds, bootstrap likelihood -10663908.079230, best rearrangement setting 15
Bootstrap[4]: Time 11.598089 seconds, bootstrap likelihood -10656708.100133, best rearrangement setting 10
Bootstrap[5]: Time 12.052230 seconds, bootstrap likelihood -10651441.341207, best rearrangement setting 10
Bootstrap[6]: Time 12.532197 seconds, bootstrap likelihood -10652459.816446, best rearrangement setting 6
Bootstrap[7]: Time 12.143756 seconds, bootstrap likelihood -10659503.702890, best rearrangement setting 14
Bootstrap[8]: Time 12.025327 seconds, bootstrap likelihood -10658892.241475, best rearrangement setting 5
Bootstrap[9]: Time 11.209750 seconds, bootstrap likelihood -10656299.653526, best rearrangement setting 7
Bootstrap[10]: Time 26.008760 seconds, bootstrap likelihood -10656650.152146, best rearrangement setting 7
Bootstrap[11]: Time 12.073292 seconds, bootstrap likelihood -10653457.414340, best rearrangement setting 5
Bootstrap[12]: Time 27.061651 seconds, bootstrap likelihood -10659178.573332, best rearrangement setting 8
Bootstrap[13]: Time 12.696000 seconds, bootstrap likelihood -10655774.119896, best rearrangement setting 7
Bootstrap[14]: Time 12.326133 seconds, bootstrap likelihood -10660908.269674, best rearrangement setting 12
Bootstrap[15]: Time 12.009682 seconds, bootstrap likelihood -10658105.277293, best rearrangement setting 15
Bootstrap[16]: Time 26.432548 seconds, bootstrap likelihood -10655119.852076, best rearrangement setting 12
Bootstrap[17]: Time 11.770755 seconds, bootstrap likelihood -10657196.326942, best rearrangement setting 12
Bootstrap[18]: Time 25.783731 seconds, bootstrap likelihood -10660582.855034, best rearrangement setting 5
Bootstrap[19]: Time 11.204888 seconds, bootstrap likelihood -10654072.051178, best rearrangement setting 8
Bootstrap[20]: Time 12.049263 seconds, bootstrap likelihood -10655566.120668, best rearrangement setting 10
Bootstrap[21]: Time 11.815792 seconds, bootstrap likelihood -10649722.728697, best rearrangement setting 6
Bootstrap[22]: Time 11.903728 seconds, bootstrap likelihood -10654393.329545, best rearrangement setting 5
Bootstrap[23]: Time 12.129302 seconds, bootstrap likelihood -10661388.373603, best rearrangement setting 7
Bootstrap[24]: Time 12.262831 seconds, bootstrap likelihood -10652825.866031, best rearrangement setting 8
Bootstrap[25]: Time 12.344480 seconds, bootstrap likelihood -10660453.722657, best rearrangement setting 6
Bootstrap[26]: Time 27.815525 seconds, bootstrap likelihood -10652802.571371, best rearrangement setting 12
Bootstrap[27]: Time 27.063434 seconds, bootstrap likelihood -10655417.664447, best rearrangement setting 10
Bootstrap[28]: Time 11.999115 seconds, bootstrap likelihood -10652829.839899, best rearrangement setting 11
Bootstrap[29]: Time 12.286668 seconds, bootstrap likelihood -10660663.915538, best rearrangement setting 12
Bootstrap[30]: Time 28.644590 seconds, bootstrap likelihood -10651006.463418, best rearrangement setting 15
Bootstrap[31]: Time 26.460565 seconds, bootstrap likelihood -10653133.397807, best rearrangement setting 15
Bootstrap[32]: Time 28.030474 seconds, bootstrap likelihood -10657276.632723, best rearrangement setting 6
Bootstrap[33]: Time 27.253057 seconds, bootstrap likelihood -10657799.122296, best rearrangement setting 15
Bootstrap[34]: Time 11.376935 seconds, bootstrap likelihood -10655299.378752, best rearrangement setting 11
Bootstrap[35]: Time 24.394238 seconds, bootstrap likelihood -10646152.698731, best rearrangement setting 8
Bootstrap[36]: Time 26.046158 seconds, bootstrap likelihood -10661842.902360, best rearrangement setting 9
Bootstrap[37]: Time 12.615144 seconds, bootstrap likelihood -10656552.362751, best rearrangement setting 11
Bootstrap[38]: Time 26.207602 seconds, bootstrap likelihood -10656931.455776, best rearrangement setting 8
Bootstrap[39]: Time 11.751979 seconds, bootstrap likelihood -10655785.255963, best rearrangement setting 13
Bootstrap[40]: Time 11.996907 seconds, bootstrap likelihood -10659232.269645, best rearrangement setting 13
Bootstrap[41]: Time 11.842608 seconds, bootstrap likelihood -10657773.791650, best rearrangement setting 10
Bootstrap[42]: Time 11.786465 seconds, bootstrap likelihood -10654245.913773, best rearrangement setting 5
Bootstrap[43]: Time 11.805103 seconds, bootstrap likelihood -10652162.130551, best rearrangement setting 14
Bootstrap[44]: Time 11.981251 seconds, bootstrap likelihood -10653724.953501, best rearrangement setting 10
Bootstrap[45]: Time 11.959760 seconds, bootstrap likelihood -10651662.226063, best rearrangement setting 15
Bootstrap[46]: Time 11.788576 seconds, bootstrap likelihood -10650231.821969, best rearrangement setting 14
Bootstrap[47]: Time 11.956596 seconds, bootstrap likelihood -10663098.359947, best rearrangement setting 8
Bootstrap[48]: Time 11.648453 seconds, bootstrap likelihood -10651519.577906, best rearrangement setting 6
Bootstrap[49]: Time 25.821575 seconds, bootstrap likelihood -10654537.261073, best rearrangement setting 7
Bootstrap[50]: Time 25.832921 seconds, bootstrap likelihood -10662266.372436, best rearrangement setting 7
Bootstrap[51]: Time 25.248924 seconds, bootstrap likelihood -10653971.273344, best rearrangement setting 11
Bootstrap[52]: Time 11.238717 seconds, bootstrap likelihood -10652782.091178, best rearrangement setting 12
Bootstrap[53]: Time 11.191290 seconds, bootstrap likelihood -10653465.219444, best rearrangement setting 8
Bootstrap[54]: Time 11.916459 seconds, bootstrap likelihood -10656738.412109, best rearrangement setting 9
Bootstrap[55]: Time 11.296194 seconds, bootstrap likelihood -10651606.559916, best rearrangement setting 11
Bootstrap[56]: Time 11.380903 seconds, bootstrap likelihood -10661797.397989, best rearrangement setting 5
Bootstrap[57]: Time 11.792945 seconds, bootstrap likelihood -10658643.262222, best rearrangement setting 7
Bootstrap[58]: Time 25.126540 seconds, bootstrap likelihood -10650204.666281, best rearrangement setting 10
Bootstrap[59]: Time 25.852091 seconds, bootstrap likelihood -10648498.959936, best rearrangement setting 9
Bootstrap[60]: Time 26.058973 seconds, bootstrap likelihood -10658349.702450, best rearrangement setting 7
Bootstrap[61]: Time 25.031301 seconds, bootstrap likelihood -10660318.994538, best rearrangement setting 5
Bootstrap[62]: Time 11.564954 seconds, bootstrap likelihood -10657475.678395, best rearrangement setting 11
Bootstrap[63]: Time 10.882945 seconds, bootstrap likelihood -10655807.194599, best rearrangement setting 12
Bootstrap[64]: Time 10.722160 seconds, bootstrap likelihood -10657554.937827, best rearrangement setting 7
Bootstrap[65]: Time 10.568795 seconds, bootstrap likelihood -10651666.857968, best rearrangement setting 5
Bootstrap[66]: Time 23.407717 seconds, bootstrap likelihood -10659960.046134, best rearrangement setting 5
Bootstrap[67]: Time 10.966084 seconds, bootstrap likelihood -10658371.424324, best rearrangement setting 15
Bootstrap[68]: Time 11.111039 seconds, bootstrap likelihood -10658997.472062, best rearrangement setting 11
Bootstrap[69]: Time 25.278862 seconds, bootstrap likelihood -10654809.358968, best rearrangement setting 5
Bootstrap[70]: Time 11.735193 seconds, bootstrap likelihood -10656781.944045, best rearrangement setting 8
Bootstrap[71]: Time 11.723199 seconds, bootstrap likelihood -10648475.762593, best rearrangement setting 10
Bootstrap[72]: Time 11.120040 seconds, bootstrap likelihood -10658375.554875, best rearrangement setting 11
Bootstrap[73]: Time 11.179060 seconds, bootstrap likelihood -10657198.109295, best rearrangement setting 9
Bootstrap[74]: Time 10.918659 seconds, bootstrap likelihood -10648813.229800, best rearrangement setting 5
Bootstrap[75]: Time 10.915424 seconds, bootstrap likelihood -10656936.291539, best rearrangement setting 8
Bootstrap[76]: Time 11.068728 seconds, bootstrap likelihood -10660560.796816, best rearrangement setting 9
Bootstrap[77]: Time 24.269235 seconds, bootstrap likelihood -10653109.987300, best rearrangement setting 11
Bootstrap[78]: Time 23.752750 seconds, bootstrap likelihood -10656226.432900, best rearrangement setting 15
Bootstrap[79]: Time 10.820534 seconds, bootstrap likelihood -10660973.724903, best rearrangement setting 9
Bootstrap[80]: Time 11.249348 seconds, bootstrap likelihood -10655940.571407, best rearrangement setting 15
Bootstrap[81]: Time 11.008666 seconds, bootstrap likelihood -10655460.562053, best rearrangement setting 7
Bootstrap[82]: Time 10.979167 seconds, bootstrap likelihood -10655171.749767, best rearrangement setting 6
Bootstrap[83]: Time 10.672128 seconds, bootstrap likelihood -10653259.065928, best rearrangement setting 10
Bootstrap[84]: Time 10.808616 seconds, bootstrap likelihood -10656466.505796, best rearrangement setting 11
Bootstrap[85]: Time 10.851219 seconds, bootstrap likelihood -10654846.726361, best rearrangement setting 8
Bootstrap[86]: Time 23.492494 seconds, bootstrap likelihood -10645387.493246, best rearrangement setting 7
Bootstrap[87]: Time 10.923675 seconds, bootstrap likelihood -10653739.052048, best rearrangement setting 7
Bootstrap[88]: Time 24.354102 seconds, bootstrap likelihood -10651096.402297, best rearrangement setting 12
Bootstrap[89]: Time 11.038579 seconds, bootstrap likelihood -10665035.945724, best rearrangement setting 10
Bootstrap[90]: Time 25.053164 seconds, bootstrap likelihood -10654645.324139, best rearrangement setting 8
Bootstrap[91]: Time 24.533005 seconds, bootstrap likelihood -10650750.220810, best rearrangement setting 12
Bootstrap[92]: Time 10.999523 seconds, bootstrap likelihood -10656190.056825, best rearrangement setting 13
Bootstrap[93]: Time 11.077630 seconds, bootstrap likelihood -10656279.755697, best rearrangement setting 15
Bootstrap[94]: Time 10.864450 seconds, bootstrap likelihood -10656700.400649, best rearrangement setting 5
Bootstrap[95]: Time 23.879246 seconds, bootstrap likelihood -10654747.135209, best rearrangement setting 5
Bootstrap[96]: Time 23.900652 seconds, bootstrap likelihood -10656928.228538, best rearrangement setting 13
Bootstrap[97]: Time 10.592837 seconds, bootstrap likelihood -10656204.981241, best rearrangement setting 11
Bootstrap[98]: Time 10.622367 seconds, bootstrap likelihood -10651520.388351, best rearrangement setting 6
Bootstrap[99]: Time 10.474076 seconds, bootstrap likelihood -10656239.339270, best rearrangement setting 14
Bootstrap[100]: Time 11.151101 seconds, bootstrap likelihood -10656365.596202, best rearrangement setting 12
Bootstrap[101]: Time 10.937226 seconds, bootstrap likelihood -10655221.184132, best rearrangement setting 10
Bootstrap[102]: Time 11.065621 seconds, bootstrap likelihood -10662346.932190, best rearrangement setting 8
Bootstrap[103]: Time 24.015851 seconds, bootstrap likelihood -10658413.752208, best rearrangement setting 8
Bootstrap[104]: Time 25.840157 seconds, bootstrap likelihood -10651989.091320, best rearrangement setting 15
Bootstrap[105]: Time 11.926055 seconds, bootstrap likelihood -10657313.377792, best rearrangement setting 7
Bootstrap[106]: Time 11.783537 seconds, bootstrap likelihood -10652086.729954, best rearrangement setting 6
Bootstrap[107]: Time 11.796424 seconds, bootstrap likelihood -10653031.220151, best rearrangement setting 13
Bootstrap[108]: Time 25.879145 seconds, bootstrap likelihood -10659517.624211, best rearrangement setting 14
Bootstrap[109]: Time 26.078449 seconds, bootstrap likelihood -10655785.472265, best rearrangement setting 12
Bootstrap[110]: Time 12.351062 seconds, bootstrap likelihood -10658619.121942, best rearrangement setting 7
Bootstrap[111]: Time 11.909231 seconds, bootstrap likelihood -10656948.310257, best rearrangement setting 15
Bootstrap[112]: Time 11.899773 seconds, bootstrap likelihood -10654396.325160, best rearrangement setting 14
Bootstrap[113]: Time 11.821239 seconds, bootstrap likelihood -10658765.377540, best rearrangement setting 5
Bootstrap[114]: Time 11.785481 seconds, bootstrap likelihood -10659306.731526, best rearrangement setting 6
Bootstrap[115]: Time 11.802795 seconds, bootstrap likelihood -10656705.131491, best rearrangement setting 7
Bootstrap[116]: Time 11.800638 seconds, bootstrap likelihood -10652917.392071, best rearrangement setting 11
Bootstrap[117]: Time 11.917031 seconds, bootstrap likelihood -10662242.199060, best rearrangement setting 8
Bootstrap[118]: Time 12.023456 seconds, bootstrap likelihood -10659019.539899, best rearrangement setting 9
Bootstrap[119]: Time 12.717116 seconds, bootstrap likelihood -10651139.931385, best rearrangement setting 14
Bootstrap[120]: Time 12.959152 seconds, bootstrap likelihood -10656016.318788, best rearrangement setting 12
Bootstrap[121]: Time 12.444148 seconds, bootstrap likelihood -10655799.894944, best rearrangement setting 8
Bootstrap[122]: Time 12.583308 seconds, bootstrap likelihood -10662282.444229, best rearrangement setting 9
Bootstrap[123]: Time 12.674157 seconds, bootstrap likelihood -10659798.173644, best rearrangement setting 6
Bootstrap[124]: Time 12.134284 seconds, bootstrap likelihood -10653953.850971, best rearrangement setting 11
Bootstrap[125]: Time 12.029743 seconds, bootstrap likelihood -10653871.181853, best rearrangement setting 11
Bootstrap[126]: Time 26.327948 seconds, bootstrap likelihood -10655850.342768, best rearrangement setting 12
Bootstrap[127]: Time 25.755071 seconds, bootstrap likelihood -10658987.817379, best rearrangement setting 9
Bootstrap[128]: Time 27.591996 seconds, bootstrap likelihood -10657260.193523, best rearrangement setting 11
Bootstrap[129]: Time 13.850234 seconds, bootstrap likelihood -10659246.661151, best rearrangement setting 5
Bootstrap[130]: Time 14.387034 seconds, bootstrap likelihood -10659571.618958, best rearrangement setting 10
Bootstrap[131]: Time 28.572353 seconds, bootstrap likelihood -10655696.479797, best rearrangement setting 9
Bootstrap[132]: Time 27.960472 seconds, bootstrap likelihood -10659630.750535, best rearrangement setting 14
Bootstrap[133]: Time 11.709293 seconds, bootstrap likelihood -10655648.780563, best rearrangement setting 13
Bootstrap[134]: Time 25.304384 seconds, bootstrap likelihood -10660311.189997, best rearrangement setting 6
Bootstrap[135]: Time 25.818380 seconds, bootstrap likelihood -10659537.480360, best rearrangement setting 11
Bootstrap[136]: Time 28.269328 seconds, bootstrap likelihood -10655547.521675, best rearrangement setting 13
Bootstrap[137]: Time 26.638605 seconds, bootstrap likelihood -10656244.697469, best rearrangement setting 6
Bootstrap[138]: Time 11.833367 seconds, bootstrap likelihood -10663928.632677, best rearrangement setting 15
Bootstrap[139]: Time 11.847675 seconds, bootstrap likelihood -10651300.529015, best rearrangement setting 5
Bootstrap[140]: Time 12.037008 seconds, bootstrap likelihood -10653373.456298, best rearrangement setting 13
Bootstrap[141]: Time 11.708369 seconds, bootstrap likelihood -10655611.525482, best rearrangement setting 5
Bootstrap[142]: Time 25.761792 seconds, bootstrap likelihood -10656797.515424, best rearrangement setting 15
Bootstrap[143]: Time 11.819070 seconds, bootstrap likelihood -10648268.064991, best rearrangement setting 7
Bootstrap[144]: Time 25.661423 seconds, bootstrap likelihood -10664836.448696, best rearrangement setting 13
Bootstrap[145]: Time 11.725490 seconds, bootstrap likelihood -10653313.308251, best rearrangement setting 7
Bootstrap[146]: Time 25.643598 seconds, bootstrap likelihood -10647411.588775, best rearrangement setting 9
Bootstrap[147]: Time 11.900255 seconds, bootstrap likelihood -10657103.464949, best rearrangement setting 12
Bootstrap[148]: Time 25.844888 seconds, bootstrap likelihood -10649860.129211, best rearrangement setting 8
Bootstrap[149]: Time 11.731186 seconds, bootstrap likelihood -10655682.916682, best rearrangement setting 12
Bootstrap[150]: Time 12.170461 seconds, bootstrap likelihood -10649073.799282, best rearrangement setting 14
Bootstrap[151]: Time 26.224445 seconds, bootstrap likelihood -10652924.318059, best rearrangement setting 5
Bootstrap[152]: Time 26.363650 seconds, bootstrap likelihood -10651890.816193, best rearrangement setting 5
Bootstrap[153]: Time 12.094980 seconds, bootstrap likelihood -10654828.968513, best rearrangement setting 13
Bootstrap[154]: Time 26.152040 seconds, bootstrap likelihood -10658047.405467, best rearrangement setting 14
Bootstrap[155]: Time 26.952331 seconds, bootstrap likelihood -10661181.914787, best rearrangement setting 13
Bootstrap[156]: Time 11.470508 seconds, bootstrap likelihood -10655421.421355, best rearrangement setting 11
Bootstrap[157]: Time 10.771704 seconds, bootstrap likelihood -10654354.164763, best rearrangement setting 8
Bootstrap[158]: Time 11.478597 seconds, bootstrap likelihood -10656024.094423, best rearrangement setting 8
Bootstrap[159]: Time 25.109263 seconds, bootstrap likelihood -10651739.490764, best rearrangement setting 5
Bootstrap[160]: Time 12.656366 seconds, bootstrap likelihood -10660408.101575, best rearrangement setting 15
Bootstrap[161]: Time 26.214292 seconds, bootstrap likelihood -10648579.224043, best rearrangement setting 13
Bootstrap[162]: Time 25.769174 seconds, bootstrap likelihood -10662018.628062, best rearrangement setting 13
Bootstrap[163]: Time 11.559984 seconds, bootstrap likelihood -10658966.338955, best rearrangement setting 12
Bootstrap[164]: Time 25.591294 seconds, bootstrap likelihood -10657794.751922, best rearrangement setting 7
Bootstrap[165]: Time 25.763548 seconds, bootstrap likelihood -10654375.152601, best rearrangement setting 13
Bootstrap[166]: Time 11.481642 seconds, bootstrap likelihood -10653882.188264, best rearrangement setting 10
Bootstrap[167]: Time 11.555971 seconds, bootstrap likelihood -10657805.992089, best rearrangement setting 12
Bootstrap[168]: Time 26.728052 seconds, bootstrap likelihood -10657225.655534, best rearrangement setting 14
Bootstrap[169]: Time 29.080706 seconds, bootstrap likelihood -10655846.123819, best rearrangement setting 10
Bootstrap[170]: Time 28.966166 seconds, bootstrap likelihood -10660695.610369, best rearrangement setting 5
Bootstrap[171]: Time 28.457540 seconds, bootstrap likelihood -10656382.025808, best rearrangement setting 11
Bootstrap[172]: Time 13.022510 seconds, bootstrap likelihood -10658178.566533, best rearrangement setting 12
Bootstrap[173]: Time 13.067619 seconds, bootstrap likelihood -10659455.745935, best rearrangement setting 11
Bootstrap[174]: Time 13.030824 seconds, bootstrap likelihood -10659700.333268, best rearrangement setting 15
Bootstrap[175]: Time 12.596146 seconds, bootstrap likelihood -10659162.920790, best rearrangement setting 14
Bootstrap[176]: Time 13.230621 seconds, bootstrap likelihood -10660758.118856, best rearrangement setting 8
Bootstrap[177]: Time 11.784319 seconds, bootstrap likelihood -10655483.164961, best rearrangement setting 8
Bootstrap[178]: Time 11.770030 seconds, bootstrap likelihood -10652014.447633, best rearrangement setting 14
Bootstrap[179]: Time 11.956369 seconds, bootstrap likelihood -10652890.759420, best rearrangement setting 5
Bootstrap[180]: Time 12.890313 seconds, bootstrap likelihood -10660083.862992, best rearrangement setting 12
Bootstrap[181]: Time 12.515026 seconds, bootstrap likelihood -10654795.149006, best rearrangement setting 14
Bootstrap[182]: Time 26.325048 seconds, bootstrap likelihood -10662411.399098, best rearrangement setting 7
Bootstrap[183]: Time 23.675048 seconds, bootstrap likelihood -10653114.948161, best rearrangement setting 11
Bootstrap[184]: Time 23.442825 seconds, bootstrap likelihood -10657790.333829, best rearrangement setting 15
Bootstrap[185]: Time 23.771886 seconds, bootstrap likelihood -10655822.435795, best rearrangement setting 8
Bootstrap[186]: Time 10.901467 seconds, bootstrap likelihood -10658191.088522, best rearrangement setting 13
Bootstrap[187]: Time 11.068415 seconds, bootstrap likelihood -10658079.824982, best rearrangement setting 8
Bootstrap[188]: Time 23.857859 seconds, bootstrap likelihood -10658277.549365, best rearrangement setting 12
Bootstrap[189]: Time 11.133477 seconds, bootstrap likelihood -10656549.522651, best rearrangement setting 11
Bootstrap[190]: Time 24.219672 seconds, bootstrap likelihood -10659657.078187, best rearrangement setting 15
Bootstrap[191]: Time 23.804144 seconds, bootstrap likelihood -10656689.646027, best rearrangement setting 8
Bootstrap[192]: Time 10.884407 seconds, bootstrap likelihood -10654585.379430, best rearrangement setting 8
Bootstrap[193]: Time 10.851023 seconds, bootstrap likelihood -10653401.797122, best rearrangement setting 10
Bootstrap[194]: Time 11.052528 seconds, bootstrap likelihood -10653622.255803, best rearrangement setting 8
Bootstrap[195]: Time 11.486952 seconds, bootstrap likelihood -10654621.678536, best rearrangement setting 7
Bootstrap[196]: Time 11.816173 seconds, bootstrap likelihood -10656800.475518, best rearrangement setting 11
Bootstrap[197]: Time 11.637815 seconds, bootstrap likelihood -10656514.109704, best rearrangement setting 8
Bootstrap[198]: Time 11.755701 seconds, bootstrap likelihood -10655985.087195, best rearrangement setting 15
Bootstrap[199]: Time 11.588555 seconds, bootstrap likelihood -10656398.118292, best rearrangement setting 8
Overall Time for 200 Rapid Bootstraps 3452.703019 seconds
Average Time per Rapid Bootstrap 17.263515 seconds
Starting ML Search ...
Fast ML optimization finished
Fast ML search Time: 1972.805841 seconds
Slow ML Search 0 Likelihood: -10656018.387808
Slow ML Search 1 Likelihood: -10656018.387719
Slow ML Search 2 Likelihood: -10656018.387716
Slow ML Search 3 Likelihood: -10656018.387716
Slow ML Search 4 Likelihood: -10656018.387776
Slow ML Search 5 Likelihood: -10656018.387776
Slow ML Search 6 Likelihood: -10656018.387932
Slow ML Search 7 Likelihood: -10656018.387932
Slow ML Search 8 Likelihood: -10656018.388090
Slow ML Search 9 Likelihood: -10656018.388090
Slow ML optimization finished
Slow ML search Time: 394.395765 seconds
Thorough ML search Time: 165.601181 seconds
Final ML Optimization Likelihood: -10656018.387861
Model Information:
Model Parameters of Partition 0, Name: No Name Provided, Type of Data: DNA
alpha: 0.020000
Tree-Length: 0.079739
rate A <-> C: 1.002845
rate A <-> G: 3.089142
rate A <-> T: 0.944688
rate C <-> G: 1.056155
rate C <-> T: 3.111729
rate G <-> T: 1.000000
freq pi(A): 0.313425
freq pi(C): 0.187628
freq pi(G): 0.187236
freq pi(T): 0.311711
ML search took 2532.807929 secs or 0.703558 hours
Combined Bootstrap and ML search took 5985.510982 secs or 1.662642 hours
Drawing Bootstrap Support Values on best-scoring ML tree ...
Found 1 tree in File /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.FB_m4p5
Found 1 tree in File /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.FB_m4p5
Program execution info written to /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_info.FB_m4p5
All 200 bootstrapped trees written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bootstrap.FB_m4p5
Best-scoring ML tree written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.FB_m4p5
Best-scoring ML tree with support values written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bipartitions.FB_m4p5
Best-scoring ML tree with support values as branch labels written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bipartitionsBranchLabels.FB_m4p5
Overall execution time for full ML analysis: 5985.514273 secs or 1.662643 hours or 0.069277 days