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RAxML_info.MGV_m4p5
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RAxML_info.MGV_m4p5
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This is RAxML version 8.0.16 released by Alexandros Stamatakis on March 21 2014.
With greatly appreciated code contributions by:
Andre Aberer (HITS)
Simon Berger (HITS)
Alexey Kozlov (HITS)
Nick Pattengale (Sandia)
Wayne Pfeiffer (SDSC)
Akifumi S. Tanabe (NRIFS)
David Dao (KIT)
Charlie Taylor (UF)
Alignment has 579580 distinct alignment patterns
Proportion of gaps and completely undetermined characters in this alignment: 46.72%
RAxML rapid bootstrapping and subsequent ML search
Using 1 distinct models/data partitions with joint branch length optimization
Executing 200 rapid bootstrap inferences and thereafter a thorough ML search
All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units
Partition: 0
Alignment Patterns: 579580
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
RAxML was called as follows:
raxmlHPC-PTHREADS-AVX -f a -m GTRGAMMA -N 200 -x 12345 -p 12345 -T 20 -o NI,HE -w /home/deren/Documents/Oaks/Virentes/analysis_raxml/ -s analysis_pyrad/outfiles/MGV_c85d6m4p5.phy -n MGV_m4p5
Time for BS model parameter optimization 187.023976
Bootstrap[0]: Time 299.758532 seconds, bootstrap likelihood -11401110.132310, best rearrangement setting 13
Bootstrap[1]: Time 116.083169 seconds, bootstrap likelihood -11411483.728727, best rearrangement setting 13
Bootstrap[2]: Time 108.750255 seconds, bootstrap likelihood -11403888.008385, best rearrangement setting 12
Bootstrap[3]: Time 127.877589 seconds, bootstrap likelihood -11406231.966297, best rearrangement setting 15
Bootstrap[4]: Time 123.641399 seconds, bootstrap likelihood -11407315.636180, best rearrangement setting 10
Bootstrap[5]: Time 115.509565 seconds, bootstrap likelihood -11408992.169522, best rearrangement setting 10
Bootstrap[6]: Time 105.828705 seconds, bootstrap likelihood -11405703.185989, best rearrangement setting 6
Bootstrap[7]: Time 110.319313 seconds, bootstrap likelihood -11400544.032377, best rearrangement setting 14
Bootstrap[8]: Time 103.914288 seconds, bootstrap likelihood -11405974.109221, best rearrangement setting 5
Bootstrap[9]: Time 110.167678 seconds, bootstrap likelihood -11401955.426491, best rearrangement setting 7
Bootstrap[10]: Time 112.350495 seconds, bootstrap likelihood -11407080.518273, best rearrangement setting 7
Bootstrap[11]: Time 114.035715 seconds, bootstrap likelihood -11403069.082231, best rearrangement setting 5
Bootstrap[12]: Time 115.538825 seconds, bootstrap likelihood -11409169.730675, best rearrangement setting 8
Bootstrap[13]: Time 114.788893 seconds, bootstrap likelihood -11399789.363286, best rearrangement setting 7
Bootstrap[14]: Time 52.039128 seconds, bootstrap likelihood -11397657.627829, best rearrangement setting 12
Bootstrap[15]: Time 112.504642 seconds, bootstrap likelihood -11398821.209448, best rearrangement setting 15
Bootstrap[16]: Time 107.225846 seconds, bootstrap likelihood -11399253.373755, best rearrangement setting 12
Bootstrap[17]: Time 110.305120 seconds, bootstrap likelihood -11408025.783039, best rearrangement setting 12
Bootstrap[18]: Time 102.452655 seconds, bootstrap likelihood -11408903.301248, best rearrangement setting 5
Bootstrap[19]: Time 110.040671 seconds, bootstrap likelihood -11411670.781146, best rearrangement setting 8
Bootstrap[20]: Time 109.627145 seconds, bootstrap likelihood -11407248.941020, best rearrangement setting 10
Bootstrap[21]: Time 108.187301 seconds, bootstrap likelihood -11407213.620320, best rearrangement setting 6
Bootstrap[22]: Time 115.801777 seconds, bootstrap likelihood -11403222.129540, best rearrangement setting 5
Bootstrap[23]: Time 119.093228 seconds, bootstrap likelihood -11402431.333491, best rearrangement setting 7
Bootstrap[24]: Time 113.775625 seconds, bootstrap likelihood -11406237.415524, best rearrangement setting 8
Bootstrap[25]: Time 119.006382 seconds, bootstrap likelihood -11413445.538951, best rearrangement setting 6
Bootstrap[26]: Time 139.923576 seconds, bootstrap likelihood -11402269.770838, best rearrangement setting 12
Bootstrap[27]: Time 136.158668 seconds, bootstrap likelihood -11406477.010844, best rearrangement setting 10
Bootstrap[28]: Time 128.401932 seconds, bootstrap likelihood -11406120.247220, best rearrangement setting 11
Bootstrap[29]: Time 121.250724 seconds, bootstrap likelihood -11402974.779743, best rearrangement setting 12
Bootstrap[30]: Time 120.770391 seconds, bootstrap likelihood -11398965.022026, best rearrangement setting 15
Bootstrap[31]: Time 121.877771 seconds, bootstrap likelihood -11406684.932300, best rearrangement setting 15
Bootstrap[32]: Time 125.147762 seconds, bootstrap likelihood -11406750.102060, best rearrangement setting 6
Bootstrap[33]: Time 127.939761 seconds, bootstrap likelihood -11404851.698814, best rearrangement setting 15
Bootstrap[34]: Time 132.146896 seconds, bootstrap likelihood -11405456.911002, best rearrangement setting 11
Bootstrap[35]: Time 132.916407 seconds, bootstrap likelihood -11407294.153146, best rearrangement setting 8
Bootstrap[36]: Time 125.043761 seconds, bootstrap likelihood -11404025.681427, best rearrangement setting 9
Bootstrap[37]: Time 59.578041 seconds, bootstrap likelihood -11398308.781808, best rearrangement setting 11
Bootstrap[38]: Time 123.682037 seconds, bootstrap likelihood -11409398.598518, best rearrangement setting 8
Bootstrap[39]: Time 122.912061 seconds, bootstrap likelihood -11401881.874480, best rearrangement setting 13
Bootstrap[40]: Time 117.494079 seconds, bootstrap likelihood -11406044.778096, best rearrangement setting 13
Bootstrap[41]: Time 120.115752 seconds, bootstrap likelihood -11409625.482258, best rearrangement setting 10
Bootstrap[42]: Time 105.102641 seconds, bootstrap likelihood -11403952.478201, best rearrangement setting 5
Bootstrap[43]: Time 113.617269 seconds, bootstrap likelihood -11407063.441962, best rearrangement setting 14
Bootstrap[44]: Time 121.847650 seconds, bootstrap likelihood -11411551.916143, best rearrangement setting 10
Bootstrap[45]: Time 111.793276 seconds, bootstrap likelihood -11411014.435517, best rearrangement setting 15
Bootstrap[46]: Time 107.874158 seconds, bootstrap likelihood -11398660.540238, best rearrangement setting 14
Bootstrap[47]: Time 111.507515 seconds, bootstrap likelihood -11402454.803845, best rearrangement setting 8
Bootstrap[48]: Time 109.150753 seconds, bootstrap likelihood -11407650.187475, best rearrangement setting 6
Bootstrap[49]: Time 110.028217 seconds, bootstrap likelihood -11407224.884851, best rearrangement setting 7
Bootstrap[50]: Time 108.623562 seconds, bootstrap likelihood -11407991.449709, best rearrangement setting 7
Bootstrap[51]: Time 111.385657 seconds, bootstrap likelihood -11406330.668256, best rearrangement setting 11
Bootstrap[52]: Time 107.084201 seconds, bootstrap likelihood -11400844.271804, best rearrangement setting 12
Bootstrap[53]: Time 50.837314 seconds, bootstrap likelihood -11414080.188939, best rearrangement setting 8
Bootstrap[54]: Time 50.195779 seconds, bootstrap likelihood -11404759.655384, best rearrangement setting 9
Bootstrap[55]: Time 109.401523 seconds, bootstrap likelihood -11399674.621161, best rearrangement setting 11
Bootstrap[56]: Time 105.187517 seconds, bootstrap likelihood -11409650.225236, best rearrangement setting 5
Bootstrap[57]: Time 114.938253 seconds, bootstrap likelihood -11409681.802915, best rearrangement setting 7
Bootstrap[58]: Time 117.962668 seconds, bootstrap likelihood -11403801.699884, best rearrangement setting 10
Bootstrap[59]: Time 119.621076 seconds, bootstrap likelihood -11408021.109833, best rearrangement setting 9
Bootstrap[60]: Time 116.230829 seconds, bootstrap likelihood -11407345.342646, best rearrangement setting 7
Bootstrap[61]: Time 121.116578 seconds, bootstrap likelihood -11405654.341852, best rearrangement setting 5
Bootstrap[62]: Time 120.558161 seconds, bootstrap likelihood -11412145.757901, best rearrangement setting 11
Bootstrap[63]: Time 120.489665 seconds, bootstrap likelihood -11411892.133318, best rearrangement setting 12
Bootstrap[64]: Time 124.652196 seconds, bootstrap likelihood -11408557.000054, best rearrangement setting 7
Bootstrap[65]: Time 126.039968 seconds, bootstrap likelihood -11406465.242558, best rearrangement setting 5
Bootstrap[66]: Time 128.954276 seconds, bootstrap likelihood -11405180.931634, best rearrangement setting 5
Bootstrap[67]: Time 129.604881 seconds, bootstrap likelihood -11412800.170985, best rearrangement setting 15
Bootstrap[68]: Time 125.144217 seconds, bootstrap likelihood -11403097.961956, best rearrangement setting 11
Bootstrap[69]: Time 54.993437 seconds, bootstrap likelihood -11408707.841561, best rearrangement setting 5
Bootstrap[70]: Time 128.562549 seconds, bootstrap likelihood -11400865.549224, best rearrangement setting 8
Bootstrap[71]: Time 138.693998 seconds, bootstrap likelihood -11409949.958975, best rearrangement setting 10
Bootstrap[72]: Time 131.499856 seconds, bootstrap likelihood -11406970.039088, best rearrangement setting 11
Bootstrap[73]: Time 132.369730 seconds, bootstrap likelihood -11410035.515302, best rearrangement setting 9
Bootstrap[74]: Time 126.715142 seconds, bootstrap likelihood -11405201.531590, best rearrangement setting 5
Bootstrap[75]: Time 127.918616 seconds, bootstrap likelihood -11400149.590844, best rearrangement setting 8
Bootstrap[76]: Time 122.124255 seconds, bootstrap likelihood -11405045.023921, best rearrangement setting 9
Bootstrap[77]: Time 128.621949 seconds, bootstrap likelihood -11409103.575342, best rearrangement setting 11
Bootstrap[78]: Time 128.380173 seconds, bootstrap likelihood -11407159.740266, best rearrangement setting 15
Bootstrap[79]: Time 119.933651 seconds, bootstrap likelihood -11402876.049703, best rearrangement setting 9
Bootstrap[80]: Time 109.577905 seconds, bootstrap likelihood -11404050.382419, best rearrangement setting 15
Bootstrap[81]: Time 112.587703 seconds, bootstrap likelihood -11409255.289593, best rearrangement setting 7
Bootstrap[82]: Time 116.488704 seconds, bootstrap likelihood -11403364.816020, best rearrangement setting 6
Bootstrap[83]: Time 116.792520 seconds, bootstrap likelihood -11406217.176891, best rearrangement setting 10
Bootstrap[84]: Time 111.742337 seconds, bootstrap likelihood -11412892.051899, best rearrangement setting 11
Bootstrap[85]: Time 112.866554 seconds, bootstrap likelihood -11408012.571407, best rearrangement setting 8
Bootstrap[86]: Time 107.738635 seconds, bootstrap likelihood -11419720.888715, best rearrangement setting 7
Bootstrap[87]: Time 51.386482 seconds, bootstrap likelihood -11416072.945237, best rearrangement setting 7
Bootstrap[88]: Time 50.836486 seconds, bootstrap likelihood -11406419.377778, best rearrangement setting 12
Bootstrap[89]: Time 112.064958 seconds, bootstrap likelihood -11403789.596216, best rearrangement setting 10
Bootstrap[90]: Time 113.084937 seconds, bootstrap likelihood -11408142.369652, best rearrangement setting 8
Bootstrap[91]: Time 112.066355 seconds, bootstrap likelihood -11404291.036775, best rearrangement setting 12
Bootstrap[92]: Time 112.198824 seconds, bootstrap likelihood -11412832.424376, best rearrangement setting 13
Bootstrap[93]: Time 115.916964 seconds, bootstrap likelihood -11407784.209558, best rearrangement setting 15
Bootstrap[94]: Time 117.023855 seconds, bootstrap likelihood -11405841.994917, best rearrangement setting 5
Bootstrap[95]: Time 51.877527 seconds, bootstrap likelihood -11406495.568931, best rearrangement setting 5
Bootstrap[96]: Time 112.487864 seconds, bootstrap likelihood -11408370.157873, best rearrangement setting 13
Bootstrap[97]: Time 102.263540 seconds, bootstrap likelihood -11411918.303610, best rearrangement setting 11
Bootstrap[98]: Time 109.747733 seconds, bootstrap likelihood -11414482.063691, best rearrangement setting 6
Bootstrap[99]: Time 116.924540 seconds, bootstrap likelihood -11408786.347223, best rearrangement setting 14
Bootstrap[100]: Time 110.658878 seconds, bootstrap likelihood -11402689.692330, best rearrangement setting 12
Bootstrap[101]: Time 49.573813 seconds, bootstrap likelihood -11409487.291966, best rearrangement setting 10
Bootstrap[102]: Time 115.129144 seconds, bootstrap likelihood -11396916.029367, best rearrangement setting 8
Bootstrap[103]: Time 118.480000 seconds, bootstrap likelihood -11403297.793629, best rearrangement setting 8
Bootstrap[104]: Time 54.167074 seconds, bootstrap likelihood -11404006.480046, best rearrangement setting 15
Bootstrap[105]: Time 116.623385 seconds, bootstrap likelihood -11406716.856562, best rearrangement setting 7
Bootstrap[106]: Time 109.690820 seconds, bootstrap likelihood -11405214.417226, best rearrangement setting 6
Bootstrap[107]: Time 119.018446 seconds, bootstrap likelihood -11407714.262139, best rearrangement setting 13
Bootstrap[108]: Time 121.656117 seconds, bootstrap likelihood -11407990.566009, best rearrangement setting 14
Bootstrap[109]: Time 117.799860 seconds, bootstrap likelihood -11402909.740925, best rearrangement setting 12
Bootstrap[110]: Time 113.048357 seconds, bootstrap likelihood -11405847.889410, best rearrangement setting 7
Bootstrap[111]: Time 115.825160 seconds, bootstrap likelihood -11407298.801241, best rearrangement setting 15
Bootstrap[112]: Time 118.219221 seconds, bootstrap likelihood -11403631.188043, best rearrangement setting 14
Bootstrap[113]: Time 114.212812 seconds, bootstrap likelihood -11406687.973597, best rearrangement setting 5
Bootstrap[114]: Time 113.837447 seconds, bootstrap likelihood -11405324.126199, best rearrangement setting 6
Bootstrap[115]: Time 112.841317 seconds, bootstrap likelihood -11419078.083512, best rearrangement setting 7
Bootstrap[116]: Time 114.050858 seconds, bootstrap likelihood -11403568.572159, best rearrangement setting 11
Bootstrap[117]: Time 111.622701 seconds, bootstrap likelihood -11406976.073981, best rearrangement setting 8
Bootstrap[118]: Time 115.814647 seconds, bootstrap likelihood -11407007.947588, best rearrangement setting 9
Bootstrap[119]: Time 112.108133 seconds, bootstrap likelihood -11409429.557165, best rearrangement setting 14
Bootstrap[120]: Time 111.799273 seconds, bootstrap likelihood -11404955.845709, best rearrangement setting 12
Bootstrap[121]: Time 110.106179 seconds, bootstrap likelihood -11414022.947882, best rearrangement setting 8
Bootstrap[122]: Time 109.349226 seconds, bootstrap likelihood -11406712.141541, best rearrangement setting 9
Bootstrap[123]: Time 110.565648 seconds, bootstrap likelihood -11399895.858048, best rearrangement setting 6
Bootstrap[124]: Time 103.458025 seconds, bootstrap likelihood -11411517.560088, best rearrangement setting 11
Bootstrap[125]: Time 110.100245 seconds, bootstrap likelihood -11407408.986658, best rearrangement setting 11
Bootstrap[126]: Time 110.671450 seconds, bootstrap likelihood -11401951.642799, best rearrangement setting 12
Bootstrap[127]: Time 114.468752 seconds, bootstrap likelihood -11406335.833628, best rearrangement setting 9
Bootstrap[128]: Time 119.133409 seconds, bootstrap likelihood -11404858.915380, best rearrangement setting 11
Bootstrap[129]: Time 112.334664 seconds, bootstrap likelihood -11410298.303840, best rearrangement setting 5
Bootstrap[130]: Time 114.028784 seconds, bootstrap likelihood -11410933.750714, best rearrangement setting 10
Bootstrap[131]: Time 111.962351 seconds, bootstrap likelihood -11397494.306853, best rearrangement setting 9
Bootstrap[132]: Time 117.157122 seconds, bootstrap likelihood -11404263.381325, best rearrangement setting 14
Bootstrap[133]: Time 117.439079 seconds, bootstrap likelihood -11402887.072685, best rearrangement setting 13
Bootstrap[134]: Time 117.759414 seconds, bootstrap likelihood -11410720.282141, best rearrangement setting 6
Bootstrap[135]: Time 107.140050 seconds, bootstrap likelihood -11411664.552157, best rearrangement setting 11
Bootstrap[136]: Time 109.241288 seconds, bootstrap likelihood -11409432.273084, best rearrangement setting 13
Bootstrap[137]: Time 109.460074 seconds, bootstrap likelihood -11400008.316527, best rearrangement setting 6
Bootstrap[138]: Time 109.104506 seconds, bootstrap likelihood -11401410.060722, best rearrangement setting 15
Bootstrap[139]: Time 105.565842 seconds, bootstrap likelihood -11404165.152269, best rearrangement setting 5
Bootstrap[140]: Time 110.592242 seconds, bootstrap likelihood -11405714.349790, best rearrangement setting 13
Bootstrap[141]: Time 109.717387 seconds, bootstrap likelihood -11409710.696084, best rearrangement setting 5
Bootstrap[142]: Time 115.012851 seconds, bootstrap likelihood -11404073.054084, best rearrangement setting 15
Bootstrap[143]: Time 110.921241 seconds, bootstrap likelihood -11407524.168198, best rearrangement setting 7
Bootstrap[144]: Time 109.021408 seconds, bootstrap likelihood -11400268.107668, best rearrangement setting 13
Bootstrap[145]: Time 107.749052 seconds, bootstrap likelihood -11405419.561381, best rearrangement setting 7
Bootstrap[146]: Time 108.489851 seconds, bootstrap likelihood -11403696.570861, best rearrangement setting 9
Bootstrap[147]: Time 111.326526 seconds, bootstrap likelihood -11406345.688251, best rearrangement setting 12
Bootstrap[148]: Time 112.227846 seconds, bootstrap likelihood -11401588.998063, best rearrangement setting 8
Bootstrap[149]: Time 49.716773 seconds, bootstrap likelihood -11402512.586464, best rearrangement setting 12
Bootstrap[150]: Time 107.017003 seconds, bootstrap likelihood -11409563.176033, best rearrangement setting 14
Bootstrap[151]: Time 103.294771 seconds, bootstrap likelihood -11408073.926657, best rearrangement setting 5
Bootstrap[152]: Time 106.993956 seconds, bootstrap likelihood -11406998.040518, best rearrangement setting 5
Bootstrap[153]: Time 108.173772 seconds, bootstrap likelihood -11408639.475244, best rearrangement setting 13
Bootstrap[154]: Time 110.733890 seconds, bootstrap likelihood -11406214.535480, best rearrangement setting 14
Bootstrap[155]: Time 114.082797 seconds, bootstrap likelihood -11407596.156942, best rearrangement setting 13
Bootstrap[156]: Time 111.239722 seconds, bootstrap likelihood -11399999.317370, best rearrangement setting 11
Bootstrap[157]: Time 51.124456 seconds, bootstrap likelihood -11404609.871868, best rearrangement setting 8
Bootstrap[158]: Time 109.477666 seconds, bootstrap likelihood -11410592.670489, best rearrangement setting 8
Bootstrap[159]: Time 100.515524 seconds, bootstrap likelihood -11401756.608715, best rearrangement setting 5
Bootstrap[160]: Time 110.212814 seconds, bootstrap likelihood -11412997.041549, best rearrangement setting 15
Bootstrap[161]: Time 109.677071 seconds, bootstrap likelihood -11408836.270145, best rearrangement setting 13
Bootstrap[162]: Time 112.817920 seconds, bootstrap likelihood -11404371.396786, best rearrangement setting 13
Bootstrap[163]: Time 53.745448 seconds, bootstrap likelihood -11402156.099213, best rearrangement setting 12
Bootstrap[164]: Time 117.546761 seconds, bootstrap likelihood -11399604.765804, best rearrangement setting 7
Bootstrap[165]: Time 108.760837 seconds, bootstrap likelihood -11408860.997654, best rearrangement setting 13
Bootstrap[166]: Time 100.710133 seconds, bootstrap likelihood -11405711.394106, best rearrangement setting 10
Bootstrap[167]: Time 108.043740 seconds, bootstrap likelihood -11404785.025590, best rearrangement setting 12
Bootstrap[168]: Time 108.655948 seconds, bootstrap likelihood -11405466.672879, best rearrangement setting 14
Bootstrap[169]: Time 103.221233 seconds, bootstrap likelihood -11410894.982372, best rearrangement setting 10
Bootstrap[170]: Time 105.967111 seconds, bootstrap likelihood -11405261.386781, best rearrangement setting 5
Bootstrap[171]: Time 118.534295 seconds, bootstrap likelihood -11403901.400433, best rearrangement setting 11
Bootstrap[172]: Time 119.118555 seconds, bootstrap likelihood -11403835.019220, best rearrangement setting 12
Bootstrap[173]: Time 118.020623 seconds, bootstrap likelihood -11402742.790736, best rearrangement setting 11
Bootstrap[174]: Time 116.650502 seconds, bootstrap likelihood -11403993.259998, best rearrangement setting 15
Bootstrap[175]: Time 129.066368 seconds, bootstrap likelihood -11402605.547399, best rearrangement setting 14
Bootstrap[176]: Time 122.383818 seconds, bootstrap likelihood -11409654.656346, best rearrangement setting 8
Bootstrap[177]: Time 115.803836 seconds, bootstrap likelihood -11399945.120707, best rearrangement setting 8
Bootstrap[178]: Time 116.667237 seconds, bootstrap likelihood -11398874.696570, best rearrangement setting 14
Bootstrap[179]: Time 120.396518 seconds, bootstrap likelihood -11401488.416291, best rearrangement setting 5
Bootstrap[180]: Time 117.652202 seconds, bootstrap likelihood -11397422.000950, best rearrangement setting 12
Bootstrap[181]: Time 121.587781 seconds, bootstrap likelihood -11407272.979468, best rearrangement setting 14
Bootstrap[182]: Time 115.014705 seconds, bootstrap likelihood -11408308.365688, best rearrangement setting 7
Bootstrap[183]: Time 119.731496 seconds, bootstrap likelihood -11413940.089178, best rearrangement setting 11
Bootstrap[184]: Time 115.275288 seconds, bootstrap likelihood -11405529.672038, best rearrangement setting 15
Bootstrap[185]: Time 110.164574 seconds, bootstrap likelihood -11405198.804473, best rearrangement setting 8
Bootstrap[186]: Time 56.098372 seconds, bootstrap likelihood -11405764.853357, best rearrangement setting 13
Bootstrap[187]: Time 52.938436 seconds, bootstrap likelihood -11401363.512575, best rearrangement setting 8
Bootstrap[188]: Time 113.663662 seconds, bootstrap likelihood -11406440.703704, best rearrangement setting 12
Bootstrap[189]: Time 119.174472 seconds, bootstrap likelihood -11413920.182168, best rearrangement setting 11
Bootstrap[190]: Time 126.088295 seconds, bootstrap likelihood -11400896.539914, best rearrangement setting 15
Bootstrap[191]: Time 125.356205 seconds, bootstrap likelihood -11406510.545644, best rearrangement setting 8
Bootstrap[192]: Time 126.905050 seconds, bootstrap likelihood -11408767.934231, best rearrangement setting 8
Bootstrap[193]: Time 134.499372 seconds, bootstrap likelihood -11401674.766552, best rearrangement setting 10
Bootstrap[194]: Time 142.260387 seconds, bootstrap likelihood -11399592.193375, best rearrangement setting 8
Bootstrap[195]: Time 131.429256 seconds, bootstrap likelihood -11404358.619364, best rearrangement setting 7
Bootstrap[196]: Time 121.526717 seconds, bootstrap likelihood -11407268.242773, best rearrangement setting 11
Bootstrap[197]: Time 114.023973 seconds, bootstrap likelihood -11405783.953918, best rearrangement setting 8
Bootstrap[198]: Time 111.727718 seconds, bootstrap likelihood -11403380.266132, best rearrangement setting 15
Bootstrap[199]: Time 113.859051 seconds, bootstrap likelihood -11407276.200917, best rearrangement setting 8
Overall Time for 200 Rapid Bootstraps 22471.651881 seconds
Average Time per Rapid Bootstrap 112.358259 seconds
Starting ML Search ...
Fast ML optimization finished
Fast ML search Time: 10656.216506 seconds
Slow ML Search 0 Likelihood: -11406325.490188
Slow ML Search 1 Likelihood: -11406325.491047
Slow ML Search 2 Likelihood: -11406325.490913
Slow ML Search 3 Likelihood: -11406325.490991
Slow ML Search 4 Likelihood: -11406325.490200
Slow ML Search 5 Likelihood: -11406325.490811
Slow ML Search 6 Likelihood: -11406325.490214
Slow ML Search 7 Likelihood: -11406325.491845
Slow ML Search 8 Likelihood: -11406325.508587
Slow ML Search 9 Likelihood: -11406325.519961
Slow ML optimization finished
Slow ML search Time: 2029.286163 seconds
Thorough ML search Time: 500.425943 seconds
Final ML Optimization Likelihood: -11406325.486722
Model Information:
Model Parameters of Partition 0, Name: No Name Provided, Type of Data: DNA
alpha: 0.020000
Tree-Length: 0.095408
rate A <-> C: 0.993340
rate A <-> G: 3.063272
rate A <-> T: 0.935211
rate C <-> G: 1.058117
rate C <-> T: 3.082434
rate G <-> T: 1.000000
freq pi(A): 0.312925
freq pi(C): 0.187941
freq pi(G): 0.187297
freq pi(T): 0.311837
ML search took 13185.936355 secs or 3.662760 hours
Combined Bootstrap and ML search took 35657.588273 secs or 9.904886 hours
Drawing Bootstrap Support Values on best-scoring ML tree ...
Found 1 tree in File /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.MGV_m4p5
Found 1 tree in File /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.MGV_m4p5
Program execution info written to /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_info.MGV_m4p5
All 200 bootstrapped trees written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bootstrap.MGV_m4p5
Best-scoring ML tree written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.MGV_m4p5
Best-scoring ML tree with support values written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bipartitions.MGV_m4p5
Best-scoring ML tree with support values as branch labels written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bipartitionsBranchLabels.MGV_m4p5
Overall execution time for full ML analysis: 35657.592308 secs or 9.904887 hours or 0.412704 days