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RAxML_info.OSMGV_m20p5
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RAxML_info.OSMGV_m20p5
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This is RAxML version 8.0.16 released by Alexandros Stamatakis on March 21 2014.
With greatly appreciated code contributions by:
Andre Aberer (HITS)
Simon Berger (HITS)
Alexey Kozlov (HITS)
Nick Pattengale (Sandia)
Wayne Pfeiffer (SDSC)
Akifumi S. Tanabe (NRIFS)
David Dao (KIT)
Charlie Taylor (UF)
Alignment has 177145 distinct alignment patterns
Proportion of gaps and completely undetermined characters in this alignment: 18.61%
RAxML rapid bootstrapping and subsequent ML search
Using 1 distinct models/data partitions with joint branch length optimization
Executing 200 rapid bootstrap inferences and thereafter a thorough ML search
All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units
Partition: 0
Alignment Patterns: 177145
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
RAxML was called as follows:
raxmlHPC-PTHREADS-AVX -f a -m GTRGAMMA -N 200 -x 12345 -p 12345 -T 20 -o NI,HE -w /home/deren/Documents/Oaks/Virentes/analysis_raxml/ -s analysis_pyrad/outfiles/OSMGV_c85d6m20p5.phy -n OSMGV_m20p5
Time for BS model parameter optimization 59.922189
Bootstrap[0]: Time 93.180525 seconds, bootstrap likelihood -2631090.454191, best rearrangement setting 13
Bootstrap[1]: Time 32.864538 seconds, bootstrap likelihood -2634858.047037, best rearrangement setting 13
Bootstrap[2]: Time 34.715734 seconds, bootstrap likelihood -2629846.716274, best rearrangement setting 12
Bootstrap[3]: Time 33.551490 seconds, bootstrap likelihood -2633587.625392, best rearrangement setting 15
Bootstrap[4]: Time 31.940234 seconds, bootstrap likelihood -2633056.331514, best rearrangement setting 10
Bootstrap[5]: Time 31.072392 seconds, bootstrap likelihood -2630864.251145, best rearrangement setting 10
Bootstrap[6]: Time 33.041693 seconds, bootstrap likelihood -2632280.041949, best rearrangement setting 6
Bootstrap[7]: Time 12.836294 seconds, bootstrap likelihood -2628850.202219, best rearrangement setting 14
Bootstrap[8]: Time 32.970304 seconds, bootstrap likelihood -2626985.583900, best rearrangement setting 5
Bootstrap[9]: Time 33.259381 seconds, bootstrap likelihood -2632195.517495, best rearrangement setting 7
Bootstrap[10]: Time 33.057184 seconds, bootstrap likelihood -2631864.353586, best rearrangement setting 7
Bootstrap[11]: Time 33.810961 seconds, bootstrap likelihood -2630013.096494, best rearrangement setting 5
Bootstrap[12]: Time 35.903157 seconds, bootstrap likelihood -2633680.952514, best rearrangement setting 8
Bootstrap[13]: Time 34.133559 seconds, bootstrap likelihood -2629662.732518, best rearrangement setting 7
Bootstrap[14]: Time 34.950494 seconds, bootstrap likelihood -2630908.243210, best rearrangement setting 12
Bootstrap[15]: Time 33.336004 seconds, bootstrap likelihood -2627594.655987, best rearrangement setting 15
Bootstrap[16]: Time 32.771177 seconds, bootstrap likelihood -2630715.789335, best rearrangement setting 12
Bootstrap[17]: Time 31.548418 seconds, bootstrap likelihood -2632853.901816, best rearrangement setting 12
Bootstrap[18]: Time 33.469398 seconds, bootstrap likelihood -2632281.239973, best rearrangement setting 5
Bootstrap[19]: Time 35.801655 seconds, bootstrap likelihood -2630632.362362, best rearrangement setting 8
Bootstrap[20]: Time 35.555222 seconds, bootstrap likelihood -2635196.934373, best rearrangement setting 10
Bootstrap[21]: Time 32.990407 seconds, bootstrap likelihood -2635400.333614, best rearrangement setting 6
Bootstrap[22]: Time 30.717294 seconds, bootstrap likelihood -2628371.822565, best rearrangement setting 5
Bootstrap[23]: Time 34.998079 seconds, bootstrap likelihood -2635947.882204, best rearrangement setting 7
Bootstrap[24]: Time 35.815848 seconds, bootstrap likelihood -2636749.438892, best rearrangement setting 8
Bootstrap[25]: Time 35.135762 seconds, bootstrap likelihood -2628259.416693, best rearrangement setting 6
Bootstrap[26]: Time 34.878993 seconds, bootstrap likelihood -2635643.959556, best rearrangement setting 12
Bootstrap[27]: Time 35.532084 seconds, bootstrap likelihood -2628101.674989, best rearrangement setting 10
Bootstrap[28]: Time 14.235969 seconds, bootstrap likelihood -2633463.468366, best rearrangement setting 11
Bootstrap[29]: Time 13.773465 seconds, bootstrap likelihood -2632615.780705, best rearrangement setting 12
Bootstrap[30]: Time 36.856657 seconds, bootstrap likelihood -2632157.897158, best rearrangement setting 15
Bootstrap[31]: Time 39.183289 seconds, bootstrap likelihood -2634599.472743, best rearrangement setting 15
Bootstrap[32]: Time 35.999852 seconds, bootstrap likelihood -2633920.753040, best rearrangement setting 6
Bootstrap[33]: Time 37.579359 seconds, bootstrap likelihood -2630551.147080, best rearrangement setting 15
Bootstrap[34]: Time 41.068510 seconds, bootstrap likelihood -2632374.128179, best rearrangement setting 11
Bootstrap[35]: Time 40.655110 seconds, bootstrap likelihood -2624453.132668, best rearrangement setting 8
Bootstrap[36]: Time 39.990673 seconds, bootstrap likelihood -2633327.736940, best rearrangement setting 9
Bootstrap[37]: Time 40.574441 seconds, bootstrap likelihood -2629791.861006, best rearrangement setting 11
Bootstrap[38]: Time 40.436421 seconds, bootstrap likelihood -2628256.754841, best rearrangement setting 8
Bootstrap[39]: Time 39.993444 seconds, bootstrap likelihood -2629185.905472, best rearrangement setting 13
Bootstrap[40]: Time 39.982543 seconds, bootstrap likelihood -2632695.489956, best rearrangement setting 13
Bootstrap[41]: Time 39.925665 seconds, bootstrap likelihood -2629251.272412, best rearrangement setting 10
Bootstrap[42]: Time 38.766609 seconds, bootstrap likelihood -2631339.851513, best rearrangement setting 5
Bootstrap[43]: Time 40.262000 seconds, bootstrap likelihood -2626204.621679, best rearrangement setting 14
Bootstrap[44]: Time 38.831419 seconds, bootstrap likelihood -2632526.279291, best rearrangement setting 10
Bootstrap[45]: Time 38.977056 seconds, bootstrap likelihood -2632377.438083, best rearrangement setting 15
Bootstrap[46]: Time 36.479882 seconds, bootstrap likelihood -2635355.109620, best rearrangement setting 14
Bootstrap[47]: Time 40.790816 seconds, bootstrap likelihood -2633371.246151, best rearrangement setting 8
Bootstrap[48]: Time 43.864686 seconds, bootstrap likelihood -2631081.521500, best rearrangement setting 6
Bootstrap[49]: Time 40.523510 seconds, bootstrap likelihood -2634124.818046, best rearrangement setting 7
Bootstrap[50]: Time 40.668072 seconds, bootstrap likelihood -2629905.240351, best rearrangement setting 7
Bootstrap[51]: Time 41.097454 seconds, bootstrap likelihood -2633401.678995, best rearrangement setting 11
Bootstrap[52]: Time 43.956568 seconds, bootstrap likelihood -2633619.515917, best rearrangement setting 12
Bootstrap[53]: Time 42.020449 seconds, bootstrap likelihood -2630212.262205, best rearrangement setting 8
Bootstrap[54]: Time 38.113676 seconds, bootstrap likelihood -2631493.909313, best rearrangement setting 9
Bootstrap[55]: Time 37.906336 seconds, bootstrap likelihood -2635060.662645, best rearrangement setting 11
Bootstrap[56]: Time 35.731618 seconds, bootstrap likelihood -2632288.748467, best rearrangement setting 5
Bootstrap[57]: Time 39.146894 seconds, bootstrap likelihood -2631044.400653, best rearrangement setting 7
Bootstrap[58]: Time 43.380107 seconds, bootstrap likelihood -2631689.752474, best rearrangement setting 10
Bootstrap[59]: Time 44.563921 seconds, bootstrap likelihood -2630192.219299, best rearrangement setting 9
Bootstrap[60]: Time 18.586870 seconds, bootstrap likelihood -2633081.399403, best rearrangement setting 7
Bootstrap[61]: Time 41.951529 seconds, bootstrap likelihood -2628488.058830, best rearrangement setting 5
Bootstrap[62]: Time 39.764631 seconds, bootstrap likelihood -2631979.447059, best rearrangement setting 11
Bootstrap[63]: Time 37.168273 seconds, bootstrap likelihood -2634086.354786, best rearrangement setting 12
Bootstrap[64]: Time 37.754588 seconds, bootstrap likelihood -2628818.143336, best rearrangement setting 7
Bootstrap[65]: Time 38.579151 seconds, bootstrap likelihood -2634717.525575, best rearrangement setting 5
Bootstrap[66]: Time 36.098387 seconds, bootstrap likelihood -2634568.222571, best rearrangement setting 5
Bootstrap[67]: Time 37.176044 seconds, bootstrap likelihood -2629672.341015, best rearrangement setting 15
Bootstrap[68]: Time 41.115771 seconds, bootstrap likelihood -2632580.931177, best rearrangement setting 11
Bootstrap[69]: Time 37.921602 seconds, bootstrap likelihood -2630945.242954, best rearrangement setting 5
Bootstrap[70]: Time 35.168000 seconds, bootstrap likelihood -2634723.599912, best rearrangement setting 8
Bootstrap[71]: Time 32.476278 seconds, bootstrap likelihood -2628842.293078, best rearrangement setting 10
Bootstrap[72]: Time 37.795527 seconds, bootstrap likelihood -2630692.919550, best rearrangement setting 11
Bootstrap[73]: Time 39.474971 seconds, bootstrap likelihood -2632142.370255, best rearrangement setting 9
Bootstrap[74]: Time 33.758259 seconds, bootstrap likelihood -2633514.797235, best rearrangement setting 5
Bootstrap[75]: Time 34.323208 seconds, bootstrap likelihood -2633118.590014, best rearrangement setting 8
Bootstrap[76]: Time 33.277582 seconds, bootstrap likelihood -2635035.238320, best rearrangement setting 9
Bootstrap[77]: Time 32.501018 seconds, bootstrap likelihood -2635562.634719, best rearrangement setting 11
Bootstrap[78]: Time 31.947196 seconds, bootstrap likelihood -2629924.823188, best rearrangement setting 15
Bootstrap[79]: Time 33.105905 seconds, bootstrap likelihood -2629053.274581, best rearrangement setting 9
Bootstrap[80]: Time 31.700754 seconds, bootstrap likelihood -2633857.964116, best rearrangement setting 15
Bootstrap[81]: Time 12.752340 seconds, bootstrap likelihood -2631686.703884, best rearrangement setting 7
Bootstrap[82]: Time 29.476630 seconds, bootstrap likelihood -2631366.492103, best rearrangement setting 6
Bootstrap[83]: Time 29.322950 seconds, bootstrap likelihood -2631387.248288, best rearrangement setting 10
Bootstrap[84]: Time 30.752987 seconds, bootstrap likelihood -2633857.646612, best rearrangement setting 11
Bootstrap[85]: Time 29.445414 seconds, bootstrap likelihood -2630350.009716, best rearrangement setting 8
Bootstrap[86]: Time 30.160381 seconds, bootstrap likelihood -2633232.496234, best rearrangement setting 7
Bootstrap[87]: Time 30.780430 seconds, bootstrap likelihood -2630900.209194, best rearrangement setting 7
Bootstrap[88]: Time 30.493483 seconds, bootstrap likelihood -2635838.893176, best rearrangement setting 12
Bootstrap[89]: Time 30.568849 seconds, bootstrap likelihood -2637807.578699, best rearrangement setting 10
Bootstrap[90]: Time 30.872423 seconds, bootstrap likelihood -2633997.351375, best rearrangement setting 8
Bootstrap[91]: Time 30.941357 seconds, bootstrap likelihood -2630921.440226, best rearrangement setting 12
Bootstrap[92]: Time 32.843136 seconds, bootstrap likelihood -2633534.372915, best rearrangement setting 13
Bootstrap[93]: Time 32.416057 seconds, bootstrap likelihood -2632685.300978, best rearrangement setting 15
Bootstrap[94]: Time 31.477494 seconds, bootstrap likelihood -2631822.006462, best rearrangement setting 5
Bootstrap[95]: Time 31.689807 seconds, bootstrap likelihood -2634291.656019, best rearrangement setting 5
Bootstrap[96]: Time 31.066895 seconds, bootstrap likelihood -2634818.714759, best rearrangement setting 13
Bootstrap[97]: Time 31.735841 seconds, bootstrap likelihood -2634951.063748, best rearrangement setting 11
Bootstrap[98]: Time 30.449231 seconds, bootstrap likelihood -2636095.723841, best rearrangement setting 6
Bootstrap[99]: Time 30.197901 seconds, bootstrap likelihood -2635584.672800, best rearrangement setting 14
Bootstrap[100]: Time 31.755556 seconds, bootstrap likelihood -2632125.884016, best rearrangement setting 12
Bootstrap[101]: Time 30.451312 seconds, bootstrap likelihood -2627111.744739, best rearrangement setting 10
Bootstrap[102]: Time 32.805262 seconds, bootstrap likelihood -2630067.530681, best rearrangement setting 8
Bootstrap[103]: Time 33.240914 seconds, bootstrap likelihood -2630991.234384, best rearrangement setting 8
Bootstrap[104]: Time 32.030727 seconds, bootstrap likelihood -2631798.921216, best rearrangement setting 15
Bootstrap[105]: Time 31.967938 seconds, bootstrap likelihood -2627260.835257, best rearrangement setting 7
Bootstrap[106]: Time 35.175534 seconds, bootstrap likelihood -2625865.318383, best rearrangement setting 6
Bootstrap[107]: Time 35.877648 seconds, bootstrap likelihood -2630281.648142, best rearrangement setting 13
Bootstrap[108]: Time 35.246171 seconds, bootstrap likelihood -2634506.927068, best rearrangement setting 14
Bootstrap[109]: Time 35.187546 seconds, bootstrap likelihood -2631478.935261, best rearrangement setting 12
Bootstrap[110]: Time 34.733615 seconds, bootstrap likelihood -2630962.762419, best rearrangement setting 7
Bootstrap[111]: Time 34.327383 seconds, bootstrap likelihood -2631240.756178, best rearrangement setting 15
Bootstrap[112]: Time 35.591190 seconds, bootstrap likelihood -2630512.680109, best rearrangement setting 14
Bootstrap[113]: Time 34.895171 seconds, bootstrap likelihood -2627457.590701, best rearrangement setting 5
Bootstrap[114]: Time 36.569076 seconds, bootstrap likelihood -2627726.224810, best rearrangement setting 6
Bootstrap[115]: Time 36.373916 seconds, bootstrap likelihood -2634991.836902, best rearrangement setting 7
Bootstrap[116]: Time 37.192173 seconds, bootstrap likelihood -2632971.048555, best rearrangement setting 11
Bootstrap[117]: Time 34.295683 seconds, bootstrap likelihood -2630445.447483, best rearrangement setting 8
Bootstrap[118]: Time 33.839263 seconds, bootstrap likelihood -2630891.269195, best rearrangement setting 9
Bootstrap[119]: Time 34.418351 seconds, bootstrap likelihood -2632840.824340, best rearrangement setting 14
Bootstrap[120]: Time 35.393516 seconds, bootstrap likelihood -2636203.348529, best rearrangement setting 12
Bootstrap[121]: Time 30.646164 seconds, bootstrap likelihood -2634902.629678, best rearrangement setting 8
Bootstrap[122]: Time 32.035717 seconds, bootstrap likelihood -2631833.139847, best rearrangement setting 9
Bootstrap[123]: Time 29.913006 seconds, bootstrap likelihood -2633465.697828, best rearrangement setting 6
Bootstrap[124]: Time 30.612047 seconds, bootstrap likelihood -2630641.019541, best rearrangement setting 11
Bootstrap[125]: Time 30.851076 seconds, bootstrap likelihood -2633168.634747, best rearrangement setting 11
Bootstrap[126]: Time 31.152941 seconds, bootstrap likelihood -2633294.744181, best rearrangement setting 12
Bootstrap[127]: Time 30.934619 seconds, bootstrap likelihood -2633028.050929, best rearrangement setting 9
Bootstrap[128]: Time 30.660683 seconds, bootstrap likelihood -2628109.073622, best rearrangement setting 11
Bootstrap[129]: Time 30.446286 seconds, bootstrap likelihood -2630902.592329, best rearrangement setting 5
Bootstrap[130]: Time 35.460199 seconds, bootstrap likelihood -2632610.739035, best rearrangement setting 10
Bootstrap[131]: Time 35.480411 seconds, bootstrap likelihood -2631363.565845, best rearrangement setting 9
Bootstrap[132]: Time 36.601417 seconds, bootstrap likelihood -2633892.880982, best rearrangement setting 14
Bootstrap[133]: Time 35.314010 seconds, bootstrap likelihood -2630830.021207, best rearrangement setting 13
Bootstrap[134]: Time 34.099767 seconds, bootstrap likelihood -2636230.187234, best rearrangement setting 6
Bootstrap[135]: Time 34.653793 seconds, bootstrap likelihood -2633679.913512, best rearrangement setting 11
Bootstrap[136]: Time 34.581142 seconds, bootstrap likelihood -2631797.786892, best rearrangement setting 13
Bootstrap[137]: Time 31.860768 seconds, bootstrap likelihood -2626398.557602, best rearrangement setting 6
Bootstrap[138]: Time 33.068180 seconds, bootstrap likelihood -2633355.308568, best rearrangement setting 15
Bootstrap[139]: Time 32.549644 seconds, bootstrap likelihood -2634329.114289, best rearrangement setting 5
Bootstrap[140]: Time 35.958804 seconds, bootstrap likelihood -2631615.425607, best rearrangement setting 13
Bootstrap[141]: Time 32.961962 seconds, bootstrap likelihood -2635098.722312, best rearrangement setting 5
Bootstrap[142]: Time 34.458385 seconds, bootstrap likelihood -2630668.031898, best rearrangement setting 15
Bootstrap[143]: Time 33.344147 seconds, bootstrap likelihood -2631399.353115, best rearrangement setting 7
Bootstrap[144]: Time 31.111263 seconds, bootstrap likelihood -2633348.594649, best rearrangement setting 13
Bootstrap[145]: Time 32.230867 seconds, bootstrap likelihood -2633903.339555, best rearrangement setting 7
Bootstrap[146]: Time 31.924394 seconds, bootstrap likelihood -2626300.891235, best rearrangement setting 9
Bootstrap[147]: Time 13.241853 seconds, bootstrap likelihood -2631970.919756, best rearrangement setting 12
Bootstrap[148]: Time 32.434796 seconds, bootstrap likelihood -2629649.054860, best rearrangement setting 8
Bootstrap[149]: Time 32.592577 seconds, bootstrap likelihood -2636563.339541, best rearrangement setting 12
Bootstrap[150]: Time 32.197398 seconds, bootstrap likelihood -2635424.544788, best rearrangement setting 14
Bootstrap[151]: Time 31.238767 seconds, bootstrap likelihood -2630585.906858, best rearrangement setting 5
Bootstrap[152]: Time 30.815414 seconds, bootstrap likelihood -2627086.760052, best rearrangement setting 5
Bootstrap[153]: Time 30.301640 seconds, bootstrap likelihood -2632820.149763, best rearrangement setting 13
Bootstrap[154]: Time 30.337109 seconds, bootstrap likelihood -2630305.436821, best rearrangement setting 14
Bootstrap[155]: Time 32.885244 seconds, bootstrap likelihood -2632846.195632, best rearrangement setting 13
Bootstrap[156]: Time 33.887556 seconds, bootstrap likelihood -2631328.163465, best rearrangement setting 11
Bootstrap[157]: Time 34.624091 seconds, bootstrap likelihood -2632202.869630, best rearrangement setting 8
Bootstrap[158]: Time 34.125505 seconds, bootstrap likelihood -2633077.559569, best rearrangement setting 8
Bootstrap[159]: Time 32.866609 seconds, bootstrap likelihood -2631347.861758, best rearrangement setting 5
Bootstrap[160]: Time 34.306761 seconds, bootstrap likelihood -2633700.858496, best rearrangement setting 15
Bootstrap[161]: Time 32.433019 seconds, bootstrap likelihood -2633761.398753, best rearrangement setting 13
Bootstrap[162]: Time 32.806606 seconds, bootstrap likelihood -2636894.106684, best rearrangement setting 13
Bootstrap[163]: Time 32.069626 seconds, bootstrap likelihood -2628093.445647, best rearrangement setting 12
Bootstrap[164]: Time 32.436988 seconds, bootstrap likelihood -2631929.837214, best rearrangement setting 7
Bootstrap[165]: Time 32.099462 seconds, bootstrap likelihood -2635196.927534, best rearrangement setting 13
Bootstrap[166]: Time 31.418404 seconds, bootstrap likelihood -2631523.939419, best rearrangement setting 10
Bootstrap[167]: Time 31.078184 seconds, bootstrap likelihood -2631700.102574, best rearrangement setting 12
Bootstrap[168]: Time 31.651522 seconds, bootstrap likelihood -2629160.878253, best rearrangement setting 14
Bootstrap[169]: Time 12.303603 seconds, bootstrap likelihood -2631962.037431, best rearrangement setting 10
Bootstrap[170]: Time 30.905263 seconds, bootstrap likelihood -2632907.597831, best rearrangement setting 5
Bootstrap[171]: Time 30.996023 seconds, bootstrap likelihood -2632279.087155, best rearrangement setting 11
Bootstrap[172]: Time 31.069640 seconds, bootstrap likelihood -2637461.030183, best rearrangement setting 12
Bootstrap[173]: Time 13.101518 seconds, bootstrap likelihood -2632570.789236, best rearrangement setting 11
Bootstrap[174]: Time 31.656209 seconds, bootstrap likelihood -2633794.479612, best rearrangement setting 15
Bootstrap[175]: Time 31.443973 seconds, bootstrap likelihood -2629567.199728, best rearrangement setting 14
Bootstrap[176]: Time 31.730264 seconds, bootstrap likelihood -2634715.743382, best rearrangement setting 8
Bootstrap[177]: Time 31.942504 seconds, bootstrap likelihood -2628381.831636, best rearrangement setting 8
Bootstrap[178]: Time 31.380106 seconds, bootstrap likelihood -2634533.864921, best rearrangement setting 14
Bootstrap[179]: Time 29.799255 seconds, bootstrap likelihood -2634228.635763, best rearrangement setting 5
Bootstrap[180]: Time 32.062151 seconds, bootstrap likelihood -2629523.969296, best rearrangement setting 12
Bootstrap[181]: Time 12.459640 seconds, bootstrap likelihood -2625826.074870, best rearrangement setting 14
Bootstrap[182]: Time 31.742335 seconds, bootstrap likelihood -2628706.562174, best rearrangement setting 7
Bootstrap[183]: Time 31.801674 seconds, bootstrap likelihood -2632131.836123, best rearrangement setting 11
Bootstrap[184]: Time 30.633441 seconds, bootstrap likelihood -2634268.070088, best rearrangement setting 15
Bootstrap[185]: Time 32.147614 seconds, bootstrap likelihood -2632993.547575, best rearrangement setting 8
Bootstrap[186]: Time 30.886498 seconds, bootstrap likelihood -2632080.678649, best rearrangement setting 13
Bootstrap[187]: Time 30.762158 seconds, bootstrap likelihood -2625898.204371, best rearrangement setting 8
Bootstrap[188]: Time 31.679471 seconds, bootstrap likelihood -2632941.353736, best rearrangement setting 12
Bootstrap[189]: Time 30.979204 seconds, bootstrap likelihood -2634565.215289, best rearrangement setting 11
Bootstrap[190]: Time 32.085979 seconds, bootstrap likelihood -2630822.745319, best rearrangement setting 15
Bootstrap[191]: Time 12.985467 seconds, bootstrap likelihood -2633561.826541, best rearrangement setting 8
Bootstrap[192]: Time 12.598843 seconds, bootstrap likelihood -2629687.798414, best rearrangement setting 8
Bootstrap[193]: Time 31.984611 seconds, bootstrap likelihood -2630659.684416, best rearrangement setting 10
Bootstrap[194]: Time 32.017585 seconds, bootstrap likelihood -2629472.903548, best rearrangement setting 8
Bootstrap[195]: Time 32.603282 seconds, bootstrap likelihood -2632611.107693, best rearrangement setting 7
Bootstrap[196]: Time 32.288904 seconds, bootstrap likelihood -2636048.298477, best rearrangement setting 11
Bootstrap[197]: Time 32.200515 seconds, bootstrap likelihood -2633877.096452, best rearrangement setting 8
Bootstrap[198]: Time 13.640065 seconds, bootstrap likelihood -2629790.132192, best rearrangement setting 15
Bootstrap[199]: Time 34.420413 seconds, bootstrap likelihood -2637039.772099, best rearrangement setting 8
Overall Time for 200 Rapid Bootstraps 6664.553165 seconds
Average Time per Rapid Bootstrap 33.322766 seconds
Starting ML Search ...
Fast ML optimization finished
Fast ML search Time: 3978.514831 seconds
Slow ML Search 0 Likelihood: -2632073.188135
Slow ML Search 1 Likelihood: -2632073.188129
Slow ML Search 2 Likelihood: -2632073.188413
Slow ML Search 3 Likelihood: -2632073.188461
Slow ML Search 4 Likelihood: -2632073.188252
Slow ML Search 5 Likelihood: -2632073.188340
Slow ML Search 6 Likelihood: -2632073.188415
Slow ML Search 7 Likelihood: -2632073.187695
Slow ML Search 8 Likelihood: -2632073.187618
Slow ML Search 9 Likelihood: -2632073.188539
Slow ML optimization finished
Slow ML search Time: 823.590408 seconds
Thorough ML search Time: 211.928273 seconds
Final ML Optimization Likelihood: -2632073.187523
Model Information:
Model Parameters of Partition 0, Name: No Name Provided, Type of Data: DNA
alpha: 0.020000
Tree-Length: 0.078947
rate A <-> C: 1.030390
rate A <-> G: 3.130780
rate A <-> T: 0.906517
rate C <-> G: 1.081486
rate C <-> T: 3.126503
rate G <-> T: 1.000000
freq pi(A): 0.305907
freq pi(C): 0.193099
freq pi(G): 0.190551
freq pi(T): 0.310444
ML search took 5014.034988 secs or 1.392787 hours
Combined Bootstrap and ML search took 11678.588193 secs or 3.244052 hours
Drawing Bootstrap Support Values on best-scoring ML tree ...
Found 1 tree in File /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.OSMGV_m20p5
Found 1 tree in File /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.OSMGV_m20p5
Program execution info written to /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_info.OSMGV_m20p5
All 200 bootstrapped trees written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bootstrap.OSMGV_m20p5
Best-scoring ML tree written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.OSMGV_m20p5
Best-scoring ML tree with support values written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bipartitions.OSMGV_m20p5
Best-scoring ML tree with support values as branch labels written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bipartitionsBranchLabels.OSMGV_m20p5
Overall execution time for full ML analysis: 11678.597305 secs or 3.244055 hours or 0.135169 days