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RAxML_info.virentes_m20p5
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RAxML_info.virentes_m20p5
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This is RAxML version 8.0.16 released by Alexandros Stamatakis on March 21 2014.
With greatly appreciated code contributions by:
Andre Aberer (HITS)
Simon Berger (HITS)
Alexey Kozlov (HITS)
Nick Pattengale (Sandia)
Wayne Pfeiffer (SDSC)
Akifumi S. Tanabe (NRIFS)
David Dao (KIT)
Charlie Taylor (UF)
Alignment has 363725 distinct alignment patterns
Proportion of gaps and completely undetermined characters in this alignment: 26.59%
RAxML rapid bootstrapping and subsequent ML search
Using 1 distinct models/data partitions with joint branch length optimization
Executing 200 rapid bootstrap inferences and thereafter a thorough ML search
All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units
Partition: 0
Alignment Patterns: 363725
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
RAxML was called as follows:
raxmlHPC-PTHREADS-AVX -f a -m GTRGAMMA -N 200 -x 12345 -p 12345 -T 20 -o NI,HE -w /home/deren/Documents/Oaks/Virentes/analysis_raxml/ -s analysis_pyrad/outfiles/virentes_c85d6m20p5.phy -n virentes_m20p5
Time for BS model parameter optimization 186.355501
Bootstrap[0]: Time 288.722122 seconds, bootstrap likelihood -4704937.905544, best rearrangement setting 13
Bootstrap[1]: Time 43.033338 seconds, bootstrap likelihood -4703017.727837, best rearrangement setting 13
Bootstrap[2]: Time 95.460196 seconds, bootstrap likelihood -4705868.957359, best rearrangement setting 12
Bootstrap[3]: Time 97.585224 seconds, bootstrap likelihood -4705234.780507, best rearrangement setting 15
Bootstrap[4]: Time 96.701295 seconds, bootstrap likelihood -4704601.044951, best rearrangement setting 10
Bootstrap[5]: Time 95.559916 seconds, bootstrap likelihood -4698916.759198, best rearrangement setting 10
Bootstrap[6]: Time 95.556689 seconds, bootstrap likelihood -4701842.950500, best rearrangement setting 6
Bootstrap[7]: Time 96.318896 seconds, bootstrap likelihood -4707533.371272, best rearrangement setting 14
Bootstrap[8]: Time 95.852834 seconds, bootstrap likelihood -4703540.333232, best rearrangement setting 5
Bootstrap[9]: Time 108.745540 seconds, bootstrap likelihood -4700751.633692, best rearrangement setting 7
Bootstrap[10]: Time 104.538537 seconds, bootstrap likelihood -4704411.117585, best rearrangement setting 7
Bootstrap[11]: Time 96.414379 seconds, bootstrap likelihood -4695840.589766, best rearrangement setting 5
Bootstrap[12]: Time 99.584023 seconds, bootstrap likelihood -4702466.972138, best rearrangement setting 8
Bootstrap[13]: Time 103.168783 seconds, bootstrap likelihood -4700068.031173, best rearrangement setting 7
Bootstrap[14]: Time 99.632100 seconds, bootstrap likelihood -4699536.501637, best rearrangement setting 12
Bootstrap[15]: Time 99.035801 seconds, bootstrap likelihood -4706459.347280, best rearrangement setting 15
Bootstrap[16]: Time 96.896793 seconds, bootstrap likelihood -4708128.535679, best rearrangement setting 12
Bootstrap[17]: Time 96.290101 seconds, bootstrap likelihood -4700071.215912, best rearrangement setting 12
Bootstrap[18]: Time 92.611131 seconds, bootstrap likelihood -4697990.104448, best rearrangement setting 5
Bootstrap[19]: Time 94.939357 seconds, bootstrap likelihood -4699677.780248, best rearrangement setting 8
Bootstrap[20]: Time 97.257766 seconds, bootstrap likelihood -4707015.878760, best rearrangement setting 10
Bootstrap[21]: Time 97.220185 seconds, bootstrap likelihood -4703078.428058, best rearrangement setting 6
Bootstrap[22]: Time 98.986068 seconds, bootstrap likelihood -4706587.305808, best rearrangement setting 5
Bootstrap[23]: Time 101.965864 seconds, bootstrap likelihood -4699550.944618, best rearrangement setting 7
Bootstrap[24]: Time 102.348694 seconds, bootstrap likelihood -4708916.557382, best rearrangement setting 8
Bootstrap[25]: Time 102.600933 seconds, bootstrap likelihood -4700079.111562, best rearrangement setting 6
Bootstrap[26]: Time 104.632660 seconds, bootstrap likelihood -4709684.895875, best rearrangement setting 12
Bootstrap[27]: Time 103.586562 seconds, bootstrap likelihood -4703458.259355, best rearrangement setting 10
Bootstrap[28]: Time 103.065334 seconds, bootstrap likelihood -4697200.460370, best rearrangement setting 11
Bootstrap[29]: Time 100.317558 seconds, bootstrap likelihood -4701505.778181, best rearrangement setting 12
Bootstrap[30]: Time 103.583933 seconds, bootstrap likelihood -4704826.813021, best rearrangement setting 15
Bootstrap[31]: Time 101.697326 seconds, bootstrap likelihood -4701143.478176, best rearrangement setting 15
Bootstrap[32]: Time 112.976858 seconds, bootstrap likelihood -4702568.127671, best rearrangement setting 6
Bootstrap[33]: Time 113.326314 seconds, bootstrap likelihood -4698007.053784, best rearrangement setting 15
Bootstrap[34]: Time 106.288898 seconds, bootstrap likelihood -4698673.279350, best rearrangement setting 11
Bootstrap[35]: Time 102.562777 seconds, bootstrap likelihood -4705788.694613, best rearrangement setting 8
Bootstrap[36]: Time 105.752553 seconds, bootstrap likelihood -4699924.622449, best rearrangement setting 9
Bootstrap[37]: Time 102.619567 seconds, bootstrap likelihood -4701297.534702, best rearrangement setting 11
Bootstrap[38]: Time 103.815768 seconds, bootstrap likelihood -4702694.673709, best rearrangement setting 8
Bootstrap[39]: Time 102.232855 seconds, bootstrap likelihood -4709826.375770, best rearrangement setting 13
Bootstrap[40]: Time 107.897278 seconds, bootstrap likelihood -4707217.484690, best rearrangement setting 13
Bootstrap[41]: Time 103.308204 seconds, bootstrap likelihood -4699870.756590, best rearrangement setting 10
Bootstrap[42]: Time 102.224208 seconds, bootstrap likelihood -4704899.796853, best rearrangement setting 5
Bootstrap[43]: Time 108.271455 seconds, bootstrap likelihood -4707340.711752, best rearrangement setting 14
Bootstrap[44]: Time 114.775731 seconds, bootstrap likelihood -4702956.015602, best rearrangement setting 10
Bootstrap[45]: Time 105.535873 seconds, bootstrap likelihood -4707090.969304, best rearrangement setting 15
Bootstrap[46]: Time 99.812149 seconds, bootstrap likelihood -4705818.830851, best rearrangement setting 14
Bootstrap[47]: Time 94.898892 seconds, bootstrap likelihood -4703180.770448, best rearrangement setting 8
Bootstrap[48]: Time 93.829325 seconds, bootstrap likelihood -4706331.103724, best rearrangement setting 6
Bootstrap[49]: Time 95.208040 seconds, bootstrap likelihood -4702041.662421, best rearrangement setting 7
Bootstrap[50]: Time 103.560636 seconds, bootstrap likelihood -4698019.350371, best rearrangement setting 7
Bootstrap[51]: Time 99.026716 seconds, bootstrap likelihood -4703717.849399, best rearrangement setting 11
Bootstrap[52]: Time 101.009283 seconds, bootstrap likelihood -4703524.944297, best rearrangement setting 12
Bootstrap[53]: Time 105.746706 seconds, bootstrap likelihood -4705617.750934, best rearrangement setting 8
Bootstrap[54]: Time 104.289607 seconds, bootstrap likelihood -4701277.694571, best rearrangement setting 9
Bootstrap[55]: Time 100.230456 seconds, bootstrap likelihood -4699301.058715, best rearrangement setting 11
Bootstrap[56]: Time 103.173779 seconds, bootstrap likelihood -4709448.214570, best rearrangement setting 5
Bootstrap[57]: Time 103.034412 seconds, bootstrap likelihood -4697764.193154, best rearrangement setting 7
Bootstrap[58]: Time 93.128825 seconds, bootstrap likelihood -4702556.086980, best rearrangement setting 10
Bootstrap[59]: Time 97.429347 seconds, bootstrap likelihood -4690456.594586, best rearrangement setting 9
Bootstrap[60]: Time 101.867529 seconds, bootstrap likelihood -4698709.651850, best rearrangement setting 7
Bootstrap[61]: Time 94.915641 seconds, bootstrap likelihood -4707398.886623, best rearrangement setting 5
Bootstrap[62]: Time 101.277433 seconds, bootstrap likelihood -4700062.934497, best rearrangement setting 11
Bootstrap[63]: Time 95.494321 seconds, bootstrap likelihood -4707626.201907, best rearrangement setting 12
Bootstrap[64]: Time 93.977670 seconds, bootstrap likelihood -4701359.765944, best rearrangement setting 7
Bootstrap[65]: Time 95.498461 seconds, bootstrap likelihood -4701589.690573, best rearrangement setting 5
Bootstrap[66]: Time 96.368931 seconds, bootstrap likelihood -4701763.271734, best rearrangement setting 5
Bootstrap[67]: Time 96.068381 seconds, bootstrap likelihood -4700803.020109, best rearrangement setting 15
Bootstrap[68]: Time 99.408752 seconds, bootstrap likelihood -4703128.454951, best rearrangement setting 11
Bootstrap[69]: Time 94.462431 seconds, bootstrap likelihood -4700579.673438, best rearrangement setting 5
Bootstrap[70]: Time 103.826307 seconds, bootstrap likelihood -4707159.856545, best rearrangement setting 8
Bootstrap[71]: Time 98.920652 seconds, bootstrap likelihood -4705060.118140, best rearrangement setting 10
Bootstrap[72]: Time 97.530027 seconds, bootstrap likelihood -4701940.736652, best rearrangement setting 11
Bootstrap[73]: Time 95.747748 seconds, bootstrap likelihood -4696448.303944, best rearrangement setting 9
Bootstrap[74]: Time 97.654672 seconds, bootstrap likelihood -4700471.756851, best rearrangement setting 5
Bootstrap[75]: Time 96.224111 seconds, bootstrap likelihood -4696761.442601, best rearrangement setting 8
Bootstrap[76]: Time 99.889566 seconds, bootstrap likelihood -4710219.190600, best rearrangement setting 9
Bootstrap[77]: Time 99.016372 seconds, bootstrap likelihood -4702941.163731, best rearrangement setting 11
Bootstrap[78]: Time 100.299496 seconds, bootstrap likelihood -4698478.413140, best rearrangement setting 15
Bootstrap[79]: Time 102.987776 seconds, bootstrap likelihood -4702243.946456, best rearrangement setting 9
Bootstrap[80]: Time 107.107236 seconds, bootstrap likelihood -4702304.407923, best rearrangement setting 15
Bootstrap[81]: Time 105.709170 seconds, bootstrap likelihood -4710081.187807, best rearrangement setting 7
Bootstrap[82]: Time 105.272402 seconds, bootstrap likelihood -4703929.845605, best rearrangement setting 6
Bootstrap[83]: Time 48.095530 seconds, bootstrap likelihood -4703074.964748, best rearrangement setting 10
Bootstrap[84]: Time 102.777515 seconds, bootstrap likelihood -4704500.224563, best rearrangement setting 11
Bootstrap[85]: Time 103.088134 seconds, bootstrap likelihood -4707980.169825, best rearrangement setting 8
Bootstrap[86]: Time 103.639792 seconds, bootstrap likelihood -4705595.602996, best rearrangement setting 7
Bootstrap[87]: Time 105.217481 seconds, bootstrap likelihood -4704729.944510, best rearrangement setting 7
Bootstrap[88]: Time 100.923310 seconds, bootstrap likelihood -4706719.948721, best rearrangement setting 12
Bootstrap[89]: Time 100.028739 seconds, bootstrap likelihood -4701261.103792, best rearrangement setting 10
Bootstrap[90]: Time 101.508355 seconds, bootstrap likelihood -4697226.307987, best rearrangement setting 8
Bootstrap[91]: Time 99.955919 seconds, bootstrap likelihood -4704028.196292, best rearrangement setting 12
Bootstrap[92]: Time 101.840691 seconds, bootstrap likelihood -4704371.049642, best rearrangement setting 13
Bootstrap[93]: Time 96.854007 seconds, bootstrap likelihood -4706566.559241, best rearrangement setting 15
Bootstrap[94]: Time 100.783929 seconds, bootstrap likelihood -4705349.073303, best rearrangement setting 5
Bootstrap[95]: Time 97.563176 seconds, bootstrap likelihood -4705552.174255, best rearrangement setting 5
Bootstrap[96]: Time 97.997424 seconds, bootstrap likelihood -4706489.032677, best rearrangement setting 13
Bootstrap[97]: Time 92.937498 seconds, bootstrap likelihood -4698888.011466, best rearrangement setting 11
Bootstrap[98]: Time 96.957277 seconds, bootstrap likelihood -4703549.776029, best rearrangement setting 6
Bootstrap[99]: Time 92.816985 seconds, bootstrap likelihood -4700153.392192, best rearrangement setting 14
Bootstrap[100]: Time 100.885016 seconds, bootstrap likelihood -4702316.517154, best rearrangement setting 12
Bootstrap[101]: Time 99.110844 seconds, bootstrap likelihood -4708356.548227, best rearrangement setting 10
Bootstrap[102]: Time 100.509334 seconds, bootstrap likelihood -4697124.725702, best rearrangement setting 8
Bootstrap[103]: Time 99.066701 seconds, bootstrap likelihood -4702246.700617, best rearrangement setting 8
Bootstrap[104]: Time 99.107563 seconds, bootstrap likelihood -4701741.754723, best rearrangement setting 15
Bootstrap[105]: Time 101.555656 seconds, bootstrap likelihood -4709814.024311, best rearrangement setting 7
Bootstrap[106]: Time 99.986455 seconds, bootstrap likelihood -4696089.126868, best rearrangement setting 6
Bootstrap[107]: Time 103.113254 seconds, bootstrap likelihood -4702539.799656, best rearrangement setting 13
Bootstrap[108]: Time 105.668902 seconds, bootstrap likelihood -4708069.814747, best rearrangement setting 14
Bootstrap[109]: Time 105.832148 seconds, bootstrap likelihood -4703062.855067, best rearrangement setting 12
Bootstrap[110]: Time 100.542327 seconds, bootstrap likelihood -4700509.145163, best rearrangement setting 7
Bootstrap[111]: Time 105.000599 seconds, bootstrap likelihood -4698441.425797, best rearrangement setting 15
Bootstrap[112]: Time 97.396411 seconds, bootstrap likelihood -4701214.239907, best rearrangement setting 14
Bootstrap[113]: Time 99.314449 seconds, bootstrap likelihood -4704397.355650, best rearrangement setting 5
Bootstrap[114]: Time 105.552163 seconds, bootstrap likelihood -4712906.230766, best rearrangement setting 6
Bootstrap[115]: Time 106.359636 seconds, bootstrap likelihood -4708018.276403, best rearrangement setting 7
Bootstrap[116]: Time 107.206565 seconds, bootstrap likelihood -4704350.658342, best rearrangement setting 11
Bootstrap[117]: Time 105.156399 seconds, bootstrap likelihood -4695853.075813, best rearrangement setting 8
Bootstrap[118]: Time 101.830790 seconds, bootstrap likelihood -4697197.434259, best rearrangement setting 9
Bootstrap[119]: Time 104.137203 seconds, bootstrap likelihood -4703359.984728, best rearrangement setting 14
Bootstrap[120]: Time 111.853130 seconds, bootstrap likelihood -4704259.371189, best rearrangement setting 12
Bootstrap[121]: Time 47.731927 seconds, bootstrap likelihood -4706938.978952, best rearrangement setting 8
Bootstrap[122]: Time 110.502698 seconds, bootstrap likelihood -4709982.970470, best rearrangement setting 9
Bootstrap[123]: Time 104.494038 seconds, bootstrap likelihood -4705854.091511, best rearrangement setting 6
Bootstrap[124]: Time 109.140358 seconds, bootstrap likelihood -4702988.002981, best rearrangement setting 11
Bootstrap[125]: Time 107.836295 seconds, bootstrap likelihood -4705917.993255, best rearrangement setting 11
Bootstrap[126]: Time 102.764605 seconds, bootstrap likelihood -4710548.153499, best rearrangement setting 12
Bootstrap[127]: Time 45.184769 seconds, bootstrap likelihood -4703491.808318, best rearrangement setting 9
Bootstrap[128]: Time 99.036006 seconds, bootstrap likelihood -4703312.084264, best rearrangement setting 11
Bootstrap[129]: Time 96.257608 seconds, bootstrap likelihood -4705369.994131, best rearrangement setting 5
Bootstrap[130]: Time 103.456959 seconds, bootstrap likelihood -4703475.681258, best rearrangement setting 10
Bootstrap[131]: Time 104.385182 seconds, bootstrap likelihood -4706998.274010, best rearrangement setting 9
Bootstrap[132]: Time 111.577492 seconds, bootstrap likelihood -4707414.915202, best rearrangement setting 14
Bootstrap[133]: Time 104.558439 seconds, bootstrap likelihood -4700249.978116, best rearrangement setting 13
Bootstrap[134]: Time 99.617149 seconds, bootstrap likelihood -4703481.621998, best rearrangement setting 6
Bootstrap[135]: Time 99.099812 seconds, bootstrap likelihood -4699441.305955, best rearrangement setting 11
Bootstrap[136]: Time 96.574017 seconds, bootstrap likelihood -4701884.328414, best rearrangement setting 13
Bootstrap[137]: Time 95.669475 seconds, bootstrap likelihood -4707032.376828, best rearrangement setting 6
Bootstrap[138]: Time 99.114049 seconds, bootstrap likelihood -4703487.730659, best rearrangement setting 15
Bootstrap[139]: Time 99.425130 seconds, bootstrap likelihood -4704880.902417, best rearrangement setting 5
Bootstrap[140]: Time 102.182779 seconds, bootstrap likelihood -4705015.524356, best rearrangement setting 13
Bootstrap[141]: Time 98.385609 seconds, bootstrap likelihood -4704341.466594, best rearrangement setting 5
Bootstrap[142]: Time 99.671285 seconds, bootstrap likelihood -4700456.684861, best rearrangement setting 15
Bootstrap[143]: Time 98.623662 seconds, bootstrap likelihood -4702818.971710, best rearrangement setting 7
Bootstrap[144]: Time 97.787207 seconds, bootstrap likelihood -4701487.117424, best rearrangement setting 13
Bootstrap[145]: Time 98.399890 seconds, bootstrap likelihood -4700814.151128, best rearrangement setting 7
Bootstrap[146]: Time 100.213524 seconds, bootstrap likelihood -4704392.978433, best rearrangement setting 9
Bootstrap[147]: Time 99.357001 seconds, bootstrap likelihood -4699275.369315, best rearrangement setting 12
Bootstrap[148]: Time 106.733285 seconds, bootstrap likelihood -4701044.738011, best rearrangement setting 8
Bootstrap[149]: Time 101.353411 seconds, bootstrap likelihood -4699620.809998, best rearrangement setting 12
Bootstrap[150]: Time 104.248460 seconds, bootstrap likelihood -4704516.235993, best rearrangement setting 14
Bootstrap[151]: Time 101.039817 seconds, bootstrap likelihood -4704832.779262, best rearrangement setting 5
Bootstrap[152]: Time 104.395692 seconds, bootstrap likelihood -4700574.998814, best rearrangement setting 5
Bootstrap[153]: Time 101.798605 seconds, bootstrap likelihood -4697427.691706, best rearrangement setting 13
Bootstrap[154]: Time 105.703059 seconds, bootstrap likelihood -4707664.685000, best rearrangement setting 14
Bootstrap[155]: Time 106.236914 seconds, bootstrap likelihood -4701497.164181, best rearrangement setting 13
Bootstrap[156]: Time 103.315991 seconds, bootstrap likelihood -4698894.706865, best rearrangement setting 11
Bootstrap[157]: Time 103.868908 seconds, bootstrap likelihood -4703602.001778, best rearrangement setting 8
Bootstrap[158]: Time 96.154710 seconds, bootstrap likelihood -4701921.186770, best rearrangement setting 8
Bootstrap[159]: Time 95.718706 seconds, bootstrap likelihood -4706116.189948, best rearrangement setting 5
Bootstrap[160]: Time 99.045710 seconds, bootstrap likelihood -4704764.487432, best rearrangement setting 15
Bootstrap[161]: Time 96.062339 seconds, bootstrap likelihood -4697202.204835, best rearrangement setting 13
Bootstrap[162]: Time 98.288253 seconds, bootstrap likelihood -4703125.992859, best rearrangement setting 13
Bootstrap[163]: Time 98.418294 seconds, bootstrap likelihood -4695511.058108, best rearrangement setting 12
Bootstrap[164]: Time 96.503888 seconds, bootstrap likelihood -4702436.595668, best rearrangement setting 7
Bootstrap[165]: Time 99.950555 seconds, bootstrap likelihood -4700976.809315, best rearrangement setting 13
Bootstrap[166]: Time 102.379803 seconds, bootstrap likelihood -4707285.903829, best rearrangement setting 10
Bootstrap[167]: Time 102.856533 seconds, bootstrap likelihood -4704432.061901, best rearrangement setting 12
Bootstrap[168]: Time 107.215362 seconds, bootstrap likelihood -4698602.637811, best rearrangement setting 14
Bootstrap[169]: Time 104.815780 seconds, bootstrap likelihood -4705331.619515, best rearrangement setting 10
Bootstrap[170]: Time 106.979902 seconds, bootstrap likelihood -4699433.895192, best rearrangement setting 5
Bootstrap[171]: Time 105.195917 seconds, bootstrap likelihood -4704751.169083, best rearrangement setting 11
Bootstrap[172]: Time 99.977105 seconds, bootstrap likelihood -4698435.673494, best rearrangement setting 12
Bootstrap[173]: Time 94.281170 seconds, bootstrap likelihood -4699986.390980, best rearrangement setting 11
Bootstrap[174]: Time 96.327651 seconds, bootstrap likelihood -4702299.456762, best rearrangement setting 15
Bootstrap[175]: Time 97.661128 seconds, bootstrap likelihood -4707093.169177, best rearrangement setting 14
Bootstrap[176]: Time 96.946323 seconds, bootstrap likelihood -4710455.148236, best rearrangement setting 8
Bootstrap[177]: Time 102.524489 seconds, bootstrap likelihood -4707941.159707, best rearrangement setting 8
Bootstrap[178]: Time 108.745703 seconds, bootstrap likelihood -4706586.849098, best rearrangement setting 14
Bootstrap[179]: Time 100.877444 seconds, bootstrap likelihood -4704540.833910, best rearrangement setting 5
Bootstrap[180]: Time 99.280190 seconds, bootstrap likelihood -4700690.923215, best rearrangement setting 12
Bootstrap[181]: Time 98.572996 seconds, bootstrap likelihood -4707212.088769, best rearrangement setting 14
Bootstrap[182]: Time 99.518740 seconds, bootstrap likelihood -4696770.590429, best rearrangement setting 7
Bootstrap[183]: Time 97.991591 seconds, bootstrap likelihood -4709120.436411, best rearrangement setting 11
Bootstrap[184]: Time 95.971807 seconds, bootstrap likelihood -4706785.571492, best rearrangement setting 15
Bootstrap[185]: Time 95.600983 seconds, bootstrap likelihood -4710410.162742, best rearrangement setting 8
Bootstrap[186]: Time 100.714508 seconds, bootstrap likelihood -4702276.552816, best rearrangement setting 13
Bootstrap[187]: Time 100.998708 seconds, bootstrap likelihood -4710209.197344, best rearrangement setting 8
Bootstrap[188]: Time 103.842096 seconds, bootstrap likelihood -4705279.333552, best rearrangement setting 12
Bootstrap[189]: Time 105.022889 seconds, bootstrap likelihood -4705639.706784, best rearrangement setting 11
Bootstrap[190]: Time 113.532473 seconds, bootstrap likelihood -4707666.039712, best rearrangement setting 15
Bootstrap[191]: Time 51.803425 seconds, bootstrap likelihood -4697984.385127, best rearrangement setting 8
Bootstrap[192]: Time 115.402689 seconds, bootstrap likelihood -4703751.345434, best rearrangement setting 8
Bootstrap[193]: Time 109.921803 seconds, bootstrap likelihood -4700727.023978, best rearrangement setting 10
Bootstrap[194]: Time 101.978786 seconds, bootstrap likelihood -4696679.439556, best rearrangement setting 8
Bootstrap[195]: Time 103.879230 seconds, bootstrap likelihood -4698051.559736, best rearrangement setting 7
Bootstrap[196]: Time 100.812513 seconds, bootstrap likelihood -4706489.858005, best rearrangement setting 11
Bootstrap[197]: Time 96.935227 seconds, bootstrap likelihood -4706757.689445, best rearrangement setting 8
Bootstrap[198]: Time 104.691516 seconds, bootstrap likelihood -4702036.251707, best rearrangement setting 15
Bootstrap[199]: Time 104.052433 seconds, bootstrap likelihood -4709132.309709, best rearrangement setting 8
Overall Time for 200 Rapid Bootstraps 20186.478796 seconds
Average Time per Rapid Bootstrap 100.932394 seconds
Starting ML Search ...
Fast ML optimization finished
Fast ML search Time: 13759.676070 seconds
Slow ML Search 0 Likelihood: -4703230.957881
Slow ML Search 1 Likelihood: -4703230.958396
Slow ML Search 2 Likelihood: -4703230.957615
Slow ML Search 3 Likelihood: -4703230.957480
Slow ML Search 4 Likelihood: -4703230.958481
Slow ML Search 5 Likelihood: -4703230.958100
Slow ML Search 6 Likelihood: -4703230.962183
Slow ML Search 7 Likelihood: -4703230.957971
Slow ML Search 8 Likelihood: -4703230.958006
Slow ML Search 9 Likelihood: -4703230.957977
Slow ML optimization finished
Slow ML search Time: 3003.417507 seconds
Thorough ML search Time: 763.925577 seconds
Final ML Optimization Likelihood: -4703230.957302
Model Information:
Model Parameters of Partition 0, Name: No Name Provided, Type of Data: DNA
alpha: 0.020000
Tree-Length: 0.101872
rate A <-> C: 1.011070
rate A <-> G: 2.959101
rate A <-> T: 0.878319
rate C <-> G: 1.095024
rate C <-> T: 2.951143
rate G <-> T: 1.000000
freq pi(A): 0.310608
freq pi(C): 0.189898
freq pi(G): 0.189176
freq pi(T): 0.310318
ML search took 17527.024016 secs or 4.868618 hours
Combined Bootstrap and ML search took 37713.502855 secs or 10.475973 hours
Drawing Bootstrap Support Values on best-scoring ML tree ...
Found 1 tree in File /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.virentes_m20p5
Found 1 tree in File /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.virentes_m20p5
Program execution info written to /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_info.virentes_m20p5
All 200 bootstrapped trees written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bootstrap.virentes_m20p5
Best-scoring ML tree written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bestTree.virentes_m20p5
Best-scoring ML tree with support values written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bipartitions.virentes_m20p5
Best-scoring ML tree with support values as branch labels written to: /home/deren/Documents/Oaks/Virentes/analysis_raxml/RAxML_bipartitionsBranchLabels.virentes_m20p5
Overall execution time for full ML analysis: 37713.509830 secs or 10.475975 hours or 0.436499 days