Merge unrelated histories from InferenceDiagnostics and MCMCChains

.github/workflows/CI.yml

@@ -0,0 +1,61 @@
+name: CI
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+
+jobs:
+  test:
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+          - '1.0'
+          - '1'
+          - 'nightly'
+        os:
+          - ubuntu-latest
+          - macOS-latest
+          - windows-latest
+        arch:
+          - x64
+        include:
+          - version: '1'
+            os: ubuntu-latest
+            arch: x64
+            coverage: true
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: actions/cache@v1
+        env:
+          cache-name: cache-artifacts
+        with:
+          path: ~/.julia/artifacts
+          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
+          restore-keys: |
+            ${{ runner.os }}-test-${{ env.cache-name }}-
+            ${{ runner.os }}-test-
+            ${{ runner.os }}-
+      - uses: julia-actions/julia-buildpkg@v1
+      - uses: julia-actions/julia-runtest@v1
+        with:
+          coverage: ${{ matrix.coverage || false }}
+      - uses: julia-actions/julia-processcoverage@v1
+        if: matrix.coverage
+      - uses: codecov/codecov-action@v1
+        if: matrix.coverage
+        with:
+          file: lcov.info
+      - uses: coverallsapp/github-action@master
+        if: matrix.coverage
+        with:
+            github-token: ${{ secrets.GITHUB_TOKEN }}
+            path-to-lcov: ./lcov.info

.github/workflows/CompatHelper.yml

@@ -0,0 +1,16 @@
+name: CompatHelper
+on:
+  schedule:
+    - cron: 0 0 * * *
+  workflow_dispatch:
+jobs:
+  CompatHelper:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Pkg.add("CompatHelper")
+        run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
+      - name: CompatHelper.main()
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}
+        run: julia -e 'using CompatHelper; CompatHelper.main(; subdirs=["", "test"])'

.github/workflows/TagBot.yml

@@ -0,0 +1,15 @@
+name: TagBot
+on:
+  issue_comment:
+    types:
+      - created
+  workflow_dispatch:
+jobs:
+  TagBot:
+    if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
+    runs-on: ubuntu-latest
+    steps:
+      - uses: JuliaRegistries/TagBot@v1
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          ssh: ${{ secrets.DOCUMENTER_KEY }}

.gitignore

@@ -0,0 +1,4 @@
+*.jl.*.cov
+*.jl.cov
+*.jl.mem
+/Manifest.toml

LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2021 David Widmann
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

Project.toml

@@ -0,0 +1,13 @@
+name = "InferenceDiagnostics"
+uuid = "be115224-59cd-429b-ad48-344e309966f0"
+authors = ["David Widmann"]
+version = "0.1.0"
+
+[compat]
+julia = "1"
+
+[extras]
+Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
+
+[targets]
+test = ["Pkg"]

README.md

@@ -0,0 +1,7 @@
+# InferenceDiagnostics.jl
+
+[![Build Status](https://github.com/devmotion/InferenceDiagnostics.jl/workflows/CI/badge.svg?branch=main)](https://github.com/devmotion/InferenceDiagnostics.jl/actions?query=workflow%3ACI+branch%3Amain)
+[![Coverage](https://codecov.io/gh/devmotion/InferenceDiagnostics.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/devmotion/InferenceDiagnostics.jl)
+[![Coverage](https://coveralls.io/repos/github/devmotion/InferenceDiagnostics.jl/badge.svg?branch=main)](https://coveralls.io/github/devmotion/InferenceDiagnostics.jl?branch=main)
+[![Code Style: Blue](https://img.shields.io/badge/code%20style-blue-4495d1.svg)](https://github.com/invenia/BlueStyle)
+[![ColPrac: Contributor's Guide on Collaborative Practices for Community Packages](https://img.shields.io/badge/ColPrac-Contributor's%20Guide-blueviolet)](https://github.com/SciML/ColPrac)

src/InferenceDiagnostics.jl

@@ -0,0 +1,5 @@
+module InferenceDiagnostics
+
+# Write your package code here.
+
+end

test/Manifest.toml

@@ -0,0 +1,26 @@
+# This file is machine-generated - editing it directly is not advised
+
+[[Base64]]
+uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
+
+[[InteractiveUtils]]
+deps = ["Markdown"]
+uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
+
+[[Logging]]
+uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
+
+[[Markdown]]
+deps = ["Base64"]
+uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
+
+[[Random]]
+deps = ["Serialization"]
+uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+
+[[Serialization]]
+uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
+
+[[Test]]
+deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
+uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

test/Project.toml

@@ -0,0 +1,6 @@
+[deps]
+Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[compat]
+julia = "1"

test/runtests.jl

@@ -0,0 +1,15 @@
+using Pkg
+
+# Activate test environment on older Julia versions
+@static if VERSION < v"1.2"
+    Pkg.activate(@__DIR__)
+    Pkg.develop(PackageSpec(; path=dirname(@__DIR__)))
+    Pkg.instantiate()
+end
+
+using InferenceDiagnostics
+using Test
+
+@testset "InferenceDiagnostics.jl" begin
+    # Write your tests here.
+end