EEfinder

EEfinder is a tool/python package that automatizes several tasks related to identification of Endogenous Elements present on Eukaryotic Genomes.

Install

EEfinder was developed and tested with BLAST 2.5.0 and DIAMOND 2.0.15, they are implemented on conda environments

git clone https://github.com/WallauBioinfo/EEfinder.git
cd EEfinder
conda env create -f env.yml
conda activate EEfinder
pip install .

Check tool

eefinder --version

#eefinder, version 1.0.0

For more information, check EEfinder Wiki here