Merge 23f3c66 into e64fde8

packtivity/handlers/environment_handlers.py

@@ -1,5 +1,3 @@
 import packtivity.utils as utils
 
 handlers,environment = utils.handler_decorator()
-
-#this will in the future handle the env-building

packtivity/statecontexts/posixfs_context.py

@@ -86,7 +86,7 @@ def contextualize_value(self,value):
     def model(self, data):
         data = data.copy()
         for p, v in data.leafs():
-            p.set(data, self.contextualize_value(v))
+            data.replace(p,self.contextualize_value(v))
         return data
 
     def json(self):

packtivity/syncbackends.py

@@ -95,7 +95,6 @@ def run_packtivity(spec, parameters,state,metadata,config):
                 job = build_job(spec['process'], parameters, state, config)
                 env = build_env(spec['environment'], parameters, state, config)
                 run_in_env(env,job,state,metadata,config)
-
             pubdata = publish(spec['publisher'], parameters,state, config)
             log.info('publishing data: %s',pubdata)
             return pubdata

packtivity/typedleafs.py

@@ -57,6 +57,9 @@ def __init__(self,data, leafmodel = None, idleafs = False):
             data = data.json()
         self._jsonable = data
 
+    def __repr__(self):
+        return '<TypedLeafs: {}>'.format(self.typed())
+
     def __getitem__(self,key):
         return self.typed().__getitem__(key)
     def __iter__(self):

tests/test_statecontexts.py

@@ -1,3 +1,11 @@
+import os
+from packtivity.typedleafs import TypedLeafs
+def test_pack_call_local(tmpdir,basic_localfs_state):
 
-from packtivity.statecontexts.posixfs_context import LocalFSState
+    pars = TypedLeafs({'parcard': ['{workdir}/parcard.dat'], 'banner_file': '{workdir}/banner.txt'})
 
+    newpars = basic_localfs_state.model(pars)
+
+    assert type(pars) == TypedLeafs
+    assert newpars['banner_file'] == os.path.join(str(tmpdir), 'banner.txt')
+    assert newpars['parcard'][0] == os.path.join(str(tmpdir), 'parcard.dat')